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The map label for this gene is ihfA

Identifier: 71908284

GI number: 71908284

Start: 2867663

End: 2867965

Strand: Reverse

Name: ihfA

Synonym: Daro_2671

Alternate gene names: 71908284

Gene position: 2867965-2867663 (Counterclockwise)

Preceding gene: 71908285

Following gene: 71908283

Centisome position: 63.72

GC content: 49.5

Gene sequence:

>303_bases
ATGACGCTAACCAAAGCTGAGCTCGCTGACCTGCTTTTCGAAAAAGTTGGCCTTAACAAGCGTGAGGCCAAAGATATGGT
CGAGGCTTTTTTCGAAGAAATACGTAATGCACTGGAAGTCGGAGATGGCGTCAAGCTGTCCGGTTTTGGTAATTTCCAGT
TGCGAGACAAACCACAGCGTCCTGGTCGCAACCCTAAAACCGGGCAGGAAATCCCAATTACGGCGCGTCGTGTTGTAACT
TTTCACGCCAGCCAAAAACTGAAGTCAGACGTCGAGCTAGCTTTTGATGGAACCGCGGCATAA

Upstream 100 bases:

>100_bases
CTTTGCAAGATTCAGAAGTTGATGCTGCAATGCAGCAACTGGTGTCCTGTTTCGAACAGGCATTCGGTGCTCAACTGCGT
GCCTGACGGAAACAATAACG

Downstream 100 bases:

>100_bases
GACTACGGGCGGGGAAGAACTACCGCCCATTCCGGCCAAGCGCTACTTCACCATTGGTGAAGTCAGTGAATTGTGCGGTG
TGAAGCCGCATGTGCTTCGT

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha 2

Number of amino acids: Translated: 100; Mature: 99

Protein sequence:

>100_residues
MTLTKAELADLLFEKVGLNKREAKDMVEAFFEEIRNALEVGDGVKLSGFGNFQLRDKPQRPGRNPKTGQEIPITARRVVT
FHASQKLKSDVELAFDGTAA

Sequences:

>Translated_100_residues
MTLTKAELADLLFEKVGLNKREAKDMVEAFFEEIRNALEVGDGVKLSGFGNFQLRDKPQRPGRNPKTGQEIPITARRVVT
FHASQKLKSDVELAFDGTAA
>Mature_99_residues
TLTKAELADLLFEKVGLNKREAKDMVEAFFEEIRNALEVGDGVKLSGFGNFQLRDKPQRPGRNPKTGQEIPITARRVVTF
HASQKLKSDVELAFDGTAA

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1788005, Length=94, Percent_Identity=73.4042553191489, Blast_Score=139, Evalue=3e-35,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=40, Blast_Score=72, Evalue=1e-14,
Organism=Escherichia coli, GI1786644, Length=89, Percent_Identity=35.9550561797753, Blast_Score=65, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFA2_DECAR (Q47CN0)

Other databases:

- EMBL:   CP000089
- RefSeq:   YP_285871.1
- HSSP:   P0A6X7
- ProteinModelPortal:   Q47CN0
- SMR:   Q47CN0
- STRING:   Q47CN0
- GeneID:   3567107
- GenomeReviews:   CP000089_GR
- KEGG:   dar:Daro_2671
- NMPDR:   fig|159087.4.peg.3447
- eggNOG:   COG0776
- HOGENOM:   HBG705085
- OMA:   VRGETVK
- ProtClustDB:   PRK00285
- BioCyc:   DARO159087:DARO_2671-MONOMER
- GO:   GO:0006350
- HAMAP:   MF_00380
- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00987

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 11105; Mature: 10974

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLTKAELADLLFEKVGLNKREAKDMVEAFFEEIRNALEVGDGVKLSGFGNFQLRDKPQR
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCC
PGRNPKTGQEIPITARRVVTFHASQKLKSDVELAFDGTAA
CCCCCCCCCCCCCCHHHHEEHHHHHHHCCCCEEECCCCCC
>Mature Secondary Structure 
TLTKAELADLLFEKVGLNKREAKDMVEAFFEEIRNALEVGDGVKLSGFGNFQLRDKPQR
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCC
PGRNPKTGQEIPITARRVVTFHASQKLKSDVELAFDGTAA
CCCCCCCCCCCCCCHHHHEEHHHHHHHCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA