BacMap

Definition	Dechloromonas aromatica RCB, complete genome.
Accession	NC_007298
Length	4,501,104

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The map label for this gene is livF [H]

Identifier: 71907975

GI number: 71907975

Start: 2540868

End: 2541677

Strand: Reverse

Name: livF [H]

Synonym: Daro_2356

Alternate gene names: 71907975

Gene position: 2541677-2540868 (Counterclockwise)

Preceding gene: 71907976

Following gene: 71907974

Centisome position: 56.47

GC content: 61.23

Gene sequence:

>810_bases
ATGAGCAAGCCCCTGGTTCTCGACCTCAACAACATTGAGGTCATCTACAACAACGCAGTCCAGGTGCTGCGCGGTCTCTC
CCTGCAAGTGCCGCGGGGAGAGATTGTCGCGCTGCTCGGCTCCAATGGGGCCGGCAAGAGCACCACGCTGAAGGCCATCT
CGAAGCTGCTTTCTCTGGAAAATGGCGAGTTGACCGGGGGCACCATTCGTTTCAATGACCGCGACACGGCCGGTCTGGCA
CCGCACGAACTGGTTCGTGCCGGCCTCTTCCACGTCATGGAAGGCCGGCGGGTATTCGAGGATCTGACGGTCGAGGAAAA
TCTGGTCGCCGCCACCTATGCGCTGAACGGGCGGGGTGGTGCGAAGCCGGATTTCGACCTGGTCTATGAATACTTCCCAC
GCCTGTTCGAACGGCGGCGCGGCCTGGCCGGCTACCTTTCCGGCGGTGAGCAGCAGATGCTGGCCATCGGCCGGGCGCTG
ATTGCCCGGCCGACCCTGATCCTGCTTGACGAACCGTCGCTCGGCCTGGCGCCGCTGCTGGTCGAGAACATCTTCTCGAT
CATCGCCCGCATCAATGCCGAGCAAGGCGTCTCGATGCTGCTGGTCGAACAGAACGCTTCAGTGGCGCTGGCGGTGGCCC
ATACCGGTTACATCATGGAAACCGGCAAAGTGGTCATCGATGGTCCGGCCGAGAAGCTGGCTGCCGATCAGGATGTCCGC
GAGTTCTACCTCGGCATGGGCCATGGCGGCGAAATGAAGAGTTTTCGCGATATCAAGCATTACAAACGGCGTAAACGGTG
GCTGTCATGA

Upstream 100 bases:

>100_bases
CGCGGCAATTCCATCCCGGTTGGCCGTATCTACCGCTTCGATGCCAAGCAACAGAAGATGCTGCCGGCCTCGGACTGGAT
CCACCTGGACTGATACCGGC

Downstream 100 bases:

>100_bases
GCATGGAACTGGAAAACCTGACCCTGCCGCAGATGCTGCGTCAGCGCGCCCAGCAGCAGCCGAACCGGGTTGCCATCCGG
CAAAAGGATTTCGGTATCTG

Product: ABC transporter related

Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]

Alternate protein names: LIV-I protein F [H]

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MSKPLVLDLNNIEVIYNNAVQVLRGLSLQVPRGEIVALLGSNGAGKSTTLKAISKLLSLENGELTGGTIRFNDRDTAGLA
PHELVRAGLFHVMEGRRVFEDLTVEENLVAATYALNGRGGAKPDFDLVYEYFPRLFERRRGLAGYLSGGEQQMLAIGRAL
IARPTLILLDEPSLGLAPLLVENIFSIIARINAEQGVSMLLVEQNASVALAVAHTGYIMETGKVVIDGPAEKLAADQDVR
EFYLGMGHGGEMKSFRDIKHYKRRKRWLS

Sequences:

>Translated_269_residues
MSKPLVLDLNNIEVIYNNAVQVLRGLSLQVPRGEIVALLGSNGAGKSTTLKAISKLLSLENGELTGGTIRFNDRDTAGLA
PHELVRAGLFHVMEGRRVFEDLTVEENLVAATYALNGRGGAKPDFDLVYEYFPRLFERRRGLAGYLSGGEQQMLAIGRAL
IARPTLILLDEPSLGLAPLLVENIFSIIARINAEQGVSMLLVEQNASVALAVAHTGYIMETGKVVIDGPAEKLAADQDVR
EFYLGMGHGGEMKSFRDIKHYKRRKRWLS
>Mature_268_residues
SKPLVLDLNNIEVIYNNAVQVLRGLSLQVPRGEIVALLGSNGAGKSTTLKAISKLLSLENGELTGGTIRFNDRDTAGLAP
HELVRAGLFHVMEGRRVFEDLTVEENLVAATYALNGRGGAKPDFDLVYEYFPRLFERRRGLAGYLSGGEQQMLAIGRALI
ARPTLILLDEPSLGLAPLLVENIFSIIARINAEQGVSMLLVEQNASVALAVAHTGYIMETGKVVIDGPAEKLAADQDVRE
FYLGMGHGGEMKSFRDIKHYKRRKRWLS

Specific function: Component of the leucine-specific transport system [H]

COG id: COG0410

COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI9961252, Length=186, Percent_Identity=32.258064516129, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI4505771, Length=187, Percent_Identity=32.0855614973262, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI9961250, Length=184, Percent_Identity=31.5217391304348, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI255708477, Length=233, Percent_Identity=29.1845493562232, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI42741659, Length=180, Percent_Identity=30.5555555555556, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI87082268, Length=243, Percent_Identity=44.0329218106996, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1789864, Length=260, Percent_Identity=28.0769230769231, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787029, Length=228, Percent_Identity=31.5789473684211, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1788225, Length=236, Percent_Identity=34.3220338983051, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789593, Length=229, Percent_Identity=31.0043668122271, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1789672, Length=234, Percent_Identity=30.3418803418803, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1787089, Length=240, Percent_Identity=31.6666666666667, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1786872, Length=238, Percent_Identity=31.9327731092437, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1788450, Length=253, Percent_Identity=30.8300395256917, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789586, Length=254, Percent_Identity=27.9527559055118, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786319, Length=252, Percent_Identity=29.3650793650794, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790467, Length=224, Percent_Identity=29.0178571428571, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1786253, Length=248, Percent_Identity=27.8225806451613, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1790544, Length=235, Percent_Identity=27.6595744680851, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788761, Length=243, Percent_Identity=28.3950617283951, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787792, Length=223, Percent_Identity=26.0089686098655, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1786398, Length=242, Percent_Identity=24.7933884297521, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788644, Length=223, Percent_Identity=30.9417040358744, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787105, Length=234, Percent_Identity=31.1965811965812, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87082267, Length=221, Percent_Identity=26.6968325791855, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788506, Length=226, Percent_Identity=26.9911504424779, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790190, Length=223, Percent_Identity=25.1121076233184, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI48994943, Length=216, Percent_Identity=27.7777777777778, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787758, Length=220, Percent_Identity=25.4545454545455, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87081834, Length=220, Percent_Identity=30, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790162, Length=235, Percent_Identity=27.2340425531915, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787712, Length=228, Percent_Identity=25.4385964912281, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081709, Length=238, Percent_Identity=25.2100840336134, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081791, Length=235, Percent_Identity=27.2340425531915, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787112, Length=239, Percent_Identity=30.1255230125523, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787370, Length=218, Percent_Identity=27.5229357798165, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081782, Length=218, Percent_Identity=28.8990825688073, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI48994997, Length=247, Percent_Identity=27.1255060728745, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790525, Length=195, Percent_Identity=27.6923076923077, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788897, Length=236, Percent_Identity=27.1186440677966, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786698, Length=203, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1789873, Length=207, Percent_Identity=27.0531400966184, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786703, Length=195, Percent_Identity=28.7179487179487, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788472, Length=224, Percent_Identity=24.1071428571429, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788210, Length=215, Percent_Identity=27.906976744186, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1787972, Length=165, Percent_Identity=32.7272727272727, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17510237, Length=254, Percent_Identity=28.740157480315, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI115533608, Length=207, Percent_Identity=30.4347826086957, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71983523, Length=235, Percent_Identity=28.0851063829787, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71983510, Length=235, Percent_Identity=28.0851063829787, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71983516, Length=235, Percent_Identity=28.0851063829787, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71984940, Length=240, Percent_Identity=29.5833333333333, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI25146777, Length=182, Percent_Identity=27.4725274725275, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71992285, Length=185, Percent_Identity=29.1891891891892, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17558664, Length=165, Percent_Identity=29.6969696969697, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17541710, Length=215, Percent_Identity=27.4418604651163, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24650853, Length=219, Percent_Identity=29.2237442922374, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24650855, Length=219, Percent_Identity=29.2237442922374, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI281362751, Length=222, Percent_Identity=28.8288288288288, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI19920532, Length=261, Percent_Identity=24.904214559387, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24580930, Length=261, Percent_Identity=24.904214559387, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI85816269, Length=224, Percent_Identity=25.4464285714286, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24580553, Length=224, Percent_Identity=25.4464285714286, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI85724864, Length=224, Percent_Identity=25.4464285714286, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24580555, Length=224, Percent_Identity=25.4464285714286, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI85726357, Length=173, Percent_Identity=31.2138728323699, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28574533, Length=225, Percent_Identity=25.3333333333333, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 29459; Mature: 29327

Theoretical pI: Translated: 7.86; Mature: 7.86

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKPLVLDLNNIEVIYNNAVQVLRGLSLQVPRGEIVALLGSNGAGKSTTLKAISKLLSLE
CCCCEEEECCCEEEEEHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCC
NGELTGGTIRFNDRDTAGLAPHELVRAGLFHVMEGRRVFEDLTVEENLVAATYALNGRGG
CCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCC
AKPDFDLVYEYFPRLFERRRGLAGYLSGGEQQMLAIGRALIARPTLILLDEPSLGLAPLL
CCCCHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHCCEEEEECCCCCCHHHHH
VENIFSIIARINAEQGVSMLLVEQNASVALAVAHTGYIMETGKVVIDGPAEKLAADQDVR
HHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCEEEECCEEEEECCHHHHHCHHHHH
EFYLGMGHGGEMKSFRDIKHYKRRKRWLS
HHHHCCCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKPLVLDLNNIEVIYNNAVQVLRGLSLQVPRGEIVALLGSNGAGKSTTLKAISKLLSLE
CCCEEEECCCEEEEEHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCC
NGELTGGTIRFNDRDTAGLAPHELVRAGLFHVMEGRRVFEDLTVEENLVAATYALNGRGG
CCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCC
AKPDFDLVYEYFPRLFERRRGLAGYLSGGEQQMLAIGRALIARPTLILLDEPSLGLAPLL
CCCCHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHCCEEEEECCCCCCHHHHH
VENIFSIIARINAEQGVSMLLVEQNASVALAVAHTGYIMETGKVVIDGPAEKLAADQDVR
HHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCEEEECCEEEEECCHHHHHCHHHHH
EFYLGMGHGGEMKSFRDIKHYKRRKRWLS
HHHHCCCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]

Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2195019; 8041620; 9278503 [H]