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The map label for this gene is yciR [C]

Identifier: 71907913

GI number: 71907913

Start: 2476388

End: 2477197

Strand: Reverse

Name: yciR [C]

Synonym: Daro_2293

Alternate gene names: 71907913

Gene position: 2477197-2476388 (Counterclockwise)

Preceding gene: 71907915

Following gene: 71907906

Centisome position: 55.04

GC content: 56.42

Gene sequence:

>810_bases
ATGCGGGCTATGTTGCTCGCCGGCATATTATTGCTCGCGATTGCCACGCTCGATGTGCTTACGCGAGTTCAATTGCGCAT
CCCCCAGTTCTACCTCATCCCCGTCGTATTGATTGCCTGGCGCGTCGGGCTTCGCGCAAGCATCGCAACTGCCATCCTCG
CCGCCATAATCGTTTTTTTCAGCAGTATCCAGGCCGGAAACCACAACGCCCGCGCCTTTTTGTTTTATGCCGAACAACTC
GCGACACTCACGTTTTTTATCGCCGCCGGCGTGCTCGCGGCGCGCTTGCGAGAAATCCAAGACCAGACGGCCGAGTTCGT
TCGACGCGATCAACTGACCGGAATCGCCAATCGGATGGCGCTCATGGAGCGGCTAAAACTCGAACTCGCCCGGCACCGGC
GCACCTCACAATCTTTTGCCCTTGTGTTCATCGATTGCGACAACTTCAAAGAGATCAACGATAGGCGCGGTCATCTGGAG
GGCGATCATTTCCTGCAAATTGTCGCCGCTACGCTTCAGGGGGCAATGCGAATGACTGATTTGGTGTCCCGCCTCTCCGG
CGACGAATTCATCGTCTTGTTGCCGGACACTGACCCCTGCGGGGCACAATGCGTCGCCGACACGCTGGAGGTGCGTTTGC
GGGAAGAGACTATCCGGACAGGGTGGAGCATGACTTTCAGTATCGGTGTTGCCGTGTTTCCCACTCCACCGGCAAACCCG
GATATTGCGATCCAACACGCCGACAATCTCATGTATATGGCAAAACAAGCCGGCAAGGGACGGTCGATCCTTGAAGTGTT
CGAAGTATGA

Upstream 100 bases:

>100_bases
GGGTATTGGATGATGTCGATGGAATGGTAATGCCCTGCTTATGACAAAACGGCCCAAAGAGACCCGTAGAAAAGATGGTT
CATTAAAGCAGGGAGAACAC

Downstream 100 bases:

>100_bases
CGATAGGTTGAGAGCGCCGAAAAGGTGGTGGTAAGCATCATCCATTCCTGGCATGGGGCTGCGCGTCCCCGGGAATGTCC
ACGCCGCCGTCGGTATCACG

Product: GGDEF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MRAMLLAGILLLAIATLDVLTRVQLRIPQFYLIPVVLIAWRVGLRASIATAILAAIIVFFSSIQAGNHNARAFLFYAEQL
ATLTFFIAAGVLAARLREIQDQTAEFVRRDQLTGIANRMALMERLKLELARHRRTSQSFALVFIDCDNFKEINDRRGHLE
GDHFLQIVAATLQGAMRMTDLVSRLSGDEFIVLLPDTDPCGAQCVADTLEVRLREETIRTGWSMTFSIGVAVFPTPPANP
DIAIQHADNLMYMAKQAGKGRSILEVFEV

Sequences:

>Translated_269_residues
MRAMLLAGILLLAIATLDVLTRVQLRIPQFYLIPVVLIAWRVGLRASIATAILAAIIVFFSSIQAGNHNARAFLFYAEQL
ATLTFFIAAGVLAARLREIQDQTAEFVRRDQLTGIANRMALMERLKLELARHRRTSQSFALVFIDCDNFKEINDRRGHLE
GDHFLQIVAATLQGAMRMTDLVSRLSGDEFIVLLPDTDPCGAQCVADTLEVRLREETIRTGWSMTFSIGVAVFPTPPANP
DIAIQHADNLMYMAKQAGKGRSILEVFEV
>Mature_269_residues
MRAMLLAGILLLAIATLDVLTRVQLRIPQFYLIPVVLIAWRVGLRASIATAILAAIIVFFSSIQAGNHNARAFLFYAEQL
ATLTFFIAAGVLAARLREIQDQTAEFVRRDQLTGIANRMALMERLKLELARHRRTSQSFALVFIDCDNFKEINDRRGHLE
GDHFLQIVAATLQGAMRMTDLVSRLSGDEFIVLLPDTDPCGAQCVADTLEVRLREETIRTGWSMTFSIGVAVFPTPPANP
DIAIQHADNLMYMAKQAGKGRSILEVFEV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=180, Percent_Identity=30.5555555555556, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787262, Length=171, Percent_Identity=32.7485380116959, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI87081881, Length=165, Percent_Identity=33.3333333333333, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI145693134, Length=171, Percent_Identity=33.3333333333333, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87082007, Length=158, Percent_Identity=34.1772151898734, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87081977, Length=226, Percent_Identity=27.8761061946903, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1788381, Length=172, Percent_Identity=31.3953488372093, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI87081974, Length=220, Percent_Identity=29.0909090909091, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1786584, Length=179, Percent_Identity=31.2849162011173, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787802, Length=178, Percent_Identity=29.2134831460674, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787816, Length=165, Percent_Identity=32.7272727272727, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788085, Length=189, Percent_Identity=25.9259259259259, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788956, Length=170, Percent_Identity=34.1176470588235, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 29944; Mature: 29944

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAMLLAGILLLAIATLDVLTRVQLRIPQFYLIPVVLIAWRVGLRASIATAILAAIIVFF
CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SSIQAGNHNARAFLFYAEQLATLTFFIAAGVLAARLREIQDQTAEFVRRDQLTGIANRMA
HHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMERLKLELARHRRTSQSFALVFIDCDNFKEINDRRGHLEGDHFLQIVAATLQGAMRMTD
HHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
LVSRLSGDEFIVLLPDTDPCGAQCVADTLEVRLREETIRTGWSMTFSIGVAVFPTPPANP
HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCC
DIAIQHADNLMYMAKQAGKGRSILEVFEV
CEEEEECCHHHHHHHHCCCCCHHHHHHCC
>Mature Secondary Structure
MRAMLLAGILLLAIATLDVLTRVQLRIPQFYLIPVVLIAWRVGLRASIATAILAAIIVFF
CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SSIQAGNHNARAFLFYAEQLATLTFFIAAGVLAARLREIQDQTAEFVRRDQLTGIANRMA
HHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMERLKLELARHRRTSQSFALVFIDCDNFKEINDRRGHLEGDHFLQIVAATLQGAMRMTD
HHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
LVSRLSGDEFIVLLPDTDPCGAQCVADTLEVRLREETIRTGWSMTFSIGVAVFPTPPANP
HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCC
DIAIQHADNLMYMAKQAGKGRSILEVFEV
CEEEEECCHHHHHHHHCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]