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The map label for this gene is yjjV [C]

Identifier: 71907830

GI number: 71907830

Start: 2384185

End: 2384988

Strand: Reverse

Name: yjjV [C]

Synonym: Daro_2208

Alternate gene names: 71907830

Gene position: 2384988-2384185 (Counterclockwise)

Preceding gene: 71907831

Following gene: 71907829

Centisome position: 52.99

GC content: 59.2

Gene sequence:

>804_bases
ATGAGTACAAGCAACGGTCTCGTGGACTTTCATTGCCACCTTGATCTCTACCCGGATCATCAGGCTGCGGTGATGGATGC
AGAAGAAGCGGGCGTGTTCACCCTAGCGGTGACCACGACGCCGCGAGCTTGGCCGCGCAACCACGAACTGGCTCAACGCA
CCAAGCACGTTCGGGCGGCGCTTGGACTGCATCCGCAGCTAGTTGCGGAGCGGGCTTCCGAGATTGAACTGTGGGATAGG
TACCTGCCGGAGACGCGCTATGTTGGAGAGGTCGGCCTCGATGCTGGCCCGCGCTTCTATAAGTCCTTGGATCTGCAGAA
GCAGGTTTTTCAGCACGTCCTTCGGCGTTGCGCCGAAGCGGGGGACAAAGTCATCACTATTCACAGCGTTCGGGCTGTGA
ACACGGTACTTGACCATGTCGAATCGTTCTTGCCGCAATCCAGAGGTAAGGTCGTATTGCATTGGTTCACCGGCAGCAAG
GCAGAGGCGCTGCGGGCCCTCGAACTCGGGTGCTACTTCTCAATCAACGCGGCCATGCTGGGGAATGAGCGGCATGCACC
GATTGTGGCGCTTATCCCGCTCGACAGGCTGCTGACTGAAACCGACGGCCCGTTCACAAAGACGGATGAACGCCCGTCCA
GACCTGCCGATGTGAGGGATGTGGTCGAAGCGCTTGGCCGACTACATGGGATGGCGGCCTCAGCGGTTGCCGCAACGATG
CGGGTGAATCTTCGCGCTTTGCTCGAGCCGAATGGCGGGCCGAAGAACGATTCAGTGCTCCCGTCAAAGGCTGCCAATCA
ATAA

Upstream 100 bases:

>100_bases
GCCTTGCGACTCGATCAACTCGCCGCCGTTTACCAGCGTGGTCTTGCCGAAGTCGCCCAGCTGATAGAGGGCGTGGAAAC
GACGCCAGGATAGGTTACGT

Downstream 100 bases:

>100_bases
GGGAGATTATCGAAGTGCCAAAAAAATTTCATGTCGCACTGTCCTTTGCCGGCGAAGAACGTGTGTATGTCGATGCCGTA
GCCAAAGCGTTGCAGGCTGA

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MSTSNGLVDFHCHLDLYPDHQAAVMDAEEAGVFTLAVTTTPRAWPRNHELAQRTKHVRAALGLHPQLVAERASEIELWDR
YLPETRYVGEVGLDAGPRFYKSLDLQKQVFQHVLRRCAEAGDKVITIHSVRAVNTVLDHVESFLPQSRGKVVLHWFTGSK
AEALRALELGCYFSINAAMLGNERHAPIVALIPLDRLLTETDGPFTKTDERPSRPADVRDVVEALGRLHGMAASAVAATM
RVNLRALLEPNGGPKNDSVLPSKAANQ

Sequences:

>Translated_267_residues
MSTSNGLVDFHCHLDLYPDHQAAVMDAEEAGVFTLAVTTTPRAWPRNHELAQRTKHVRAALGLHPQLVAERASEIELWDR
YLPETRYVGEVGLDAGPRFYKSLDLQKQVFQHVLRRCAEAGDKVITIHSVRAVNTVLDHVESFLPQSRGKVVLHWFTGSK
AEALRALELGCYFSINAAMLGNERHAPIVALIPLDRLLTETDGPFTKTDERPSRPADVRDVVEALGRLHGMAASAVAATM
RVNLRALLEPNGGPKNDSVLPSKAANQ
>Mature_266_residues
STSNGLVDFHCHLDLYPDHQAAVMDAEEAGVFTLAVTTTPRAWPRNHELAQRTKHVRAALGLHPQLVAERASEIELWDRY
LPETRYVGEVGLDAGPRFYKSLDLQKQVFQHVLRRCAEAGDKVITIHSVRAVNTVLDHVESFLPQSRGKVVLHWFTGSKA
EALRALELGCYFSINAAMLGNERHAPIVALIPLDRLLTETDGPFTKTDERPSRPADVRDVVEALGRLHGMAASAVAATMR
VNLRALLEPNGGPKNDSVLPSKAANQ

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Escherichia coli, GI87082439, Length=261, Percent_Identity=28.3524904214559, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787342, Length=260, Percent_Identity=30.7692307692308, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI48994985, Length=247, Percent_Identity=28.7449392712551, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29447; Mature: 29316

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTSNGLVDFHCHLDLYPDHQAAVMDAEEAGVFTLAVTTTPRAWPRNHELAQRTKHVRAA
CCCCCCEEEEEEEEEECCCCCHHEEEHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHHH
LGLHPQLVAERASEIELWDRYLPETRYVGEVGLDAGPRFYKSLDLQKQVFQHVLRRCAEA
HCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
GDKVITIHSVRAVNTVLDHVESFLPQSRGKVVLHWFTGSKAEALRALELGCYFSINAAML
CCCEEEEEHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCEEEEECCEEE
GNERHAPIVALIPLDRLLTETDGPFTKTDERPSRPADVRDVVEALGRLHGMAASAVAATM
CCCCCCCEEEEECHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
RVNLRALLEPNGGPKNDSVLPSKAANQ
HHEEEEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
STSNGLVDFHCHLDLYPDHQAAVMDAEEAGVFTLAVTTTPRAWPRNHELAQRTKHVRAA
CCCCCEEEEEEEEEECCCCCHHEEEHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHHH
LGLHPQLVAERASEIELWDRYLPETRYVGEVGLDAGPRFYKSLDLQKQVFQHVLRRCAEA
HCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
GDKVITIHSVRAVNTVLDHVESFLPQSRGKVVLHWFTGSKAEALRALELGCYFSINAAML
CCCEEEEEHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCEEEEECCEEE
GNERHAPIVALIPLDRLLTETDGPFTKTDERPSRPADVRDVVEALGRLHGMAASAVAATM
CCCCCCCEEEEECHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
RVNLRALLEPNGGPKNDSVLPSKAANQ
HHEEEEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]