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The map label for this gene is clpV1 [H]

Identifier: 71907793

GI number: 71907793

Start: 2343212

End: 2345911

Strand: Reverse

Name: clpV1 [H]

Synonym: Daro_2171

Alternate gene names: 71907793

Gene position: 2345911-2343212 (Counterclockwise)

Preceding gene: 71907794

Following gene: 71907792

Centisome position: 52.12

GC content: 61.59

Gene sequence:

>2700_bases
ATGAGCACCTCCCTGAAAACCCTGATCAGCAAACTGAATAGCACCTGCCGCCAGGCAGCCGAACGCGCCGCCAGTCTGTG
CATGTCGCGCGGCAATTACGAGGTTGATCTTGAGCACCTGTTGATCGCGATTCTCGAAAATCCCGGGGCAGACCTGCTGG
TCATCGGCAAGCGTTGCGGTATCAGCCCGACCGGCCTGGAGCGCGAACTGAACCAGGAAATCGACCGCTTCAAGACCGGC
AATACCCGGACGCCGGTTTTCTCGACGCACATTCTCAAGCTCTTCGAACAAGCCTGGCTGATCGCCTCGCTCGATGCCCG
CCTGCCGCGCATTCGTTCCGGCCACCTGTTGCTGGCGCTGCTGACCGAGCCGGAGCTGTCGCAACTGGCTTTCCGTGGTT
CCAAACTGCTGGGCAAGGTTCGTTTGGACGAACTGAAGCACAACTTCGACCAGATGACCGAAGGCTCGGCCGAAGCGGCC
GAAGTAGCCGGCCTGGCAGCGTCGGCTGAGGGCGGAGATGAATCCGACCCCTTGCTCGCCGGTAGCCCGCAAGGTGGCAA
GACACCGGCGCTTGACCAATTCACCACCAACCTGACGCAACGGGCTCGCGATGGCAAGGTTGATCCGGTGATCGGCCGTG
ACAGCGAAATTCGTCAGGTGATCGACATCCTGATGCGGCGCCGCCAGAACAATCCGATCCTGACCGGTGAGGCCGGTGTC
GGCAAGACCGCCGTTGTCGAAGGGTTGGCCTTGCGCATCGCCCAGGACGATGTGCCGCCACCGCTGCTCGGAGTCGAACT
GCACACGCTGGACATGGGGCTGCTGCAGGCCGGCGCCAGCGTCAAGGGCGAGTTCGAGAACCGCCTGAAAAACGTCATCG
ATGAGGTCAAGAAGAGCGTCAAGCCGATCATCCTGTTCATCGACGAAGCCCACACCATGATCGGGGCAGGGGGGCAGTCC
GGCCAGAACGACGCGGCCAACCTGCTCAAGCCGGCGCTGGCACGCGGCGAGTTGCGCACCGTGGCGGCAACGACCTGGGC
CGAGTACAAGAAATACTTCGAGAAGGATGCCGCGCTGGCTCGCCGCTTCCAGGGCGTCAAAGTCGAGGAGCCAACCGAGA
TACTGGCCTCTGCCATGTTGCGCGGCATGGTGCCGTTGATGGAAAAGCATTTCGGTATTCGCGTTCTCGACGAAGCCGTG
ACCGAAGCGGTTCGCCTGTCGCACCGCTACATCAGCGGCCGCCAACTGCCGGACAAGGCAATCAGCGTGCTCGACACGGC
TTGTGCCAAGGTGGCGCTTGGCCAGAGTGCCACGCCAGCCTTGATAGACGAAGCTGACAAGCGGCTGCTGCGCGAGCGGG
CCGAACTGGCCGCCCTTGAACGCGAAGCCGCCAGCGGCGCCTGGCACGATACGCGGATCAAGGAACTCAAGGCGCAGATT
TCCGCCATCGAATCTGATCTCAGCATCTTCAAGACGCGTTTTGAAGAAGAAAAAACCTTGGTCAATCGCGTTCTCGAACT
GCGTGGACAGCTCGAAAATGGCGAGGTGGCCGTCGACGCCGCACCAAAACCCAAAGCCAGGGCGCGCAAGAAAGGCGAGG
GCGAAGCGGTCGGTGATAGCGAACTCGACAAGGCCCTGGCGCGTCTGCGCGAGTTGCAGGGCGAGTCGCCGATGGTTCCG
CTGCAGGTCGATGGTCACGTCGTCGCCGAGATCATTGCCGCCTGGACCGGTATTCCGCTCGGCAAAATGGTCAAGAACGA
GATCAACACTGTCCTCAACCTGAAGCCGCTCCTAAAGGAACGGGTCATCGGCCAGGATCATGCGCTGGAGGCTGTGGCCC
AGCGCGTTCGCACCGCCCGCGCCTACCTCGAAGACCCGAACAAGCCGAAAGGCGTCTTCATGTTTGTCGGCCCCTCCGGT
GTCGGCAAGACCGAAACCGCCCTGGCGCTGGCCGATATCCTCTACGGCGGCGAACGCAAGCTGGTTACCATCAATATGAG
CGAATACCAGGAAGCTCACTCGGTGTCCGGTCTCAAGGGCTCGCCACCGGGCTACGTTGGCTACGGCGAAGGCGGGGTGC
TGACCGAAGCCGTGCGGCGCAATCCCTATAGCGTTGTCCTGCTCGATGAAGTGGAGAAGGCTCACCCGGACGTGCTGGAA
CTCTTCTTCCAGGTCTTCGACAAGGGCGTCCTCGACGATGCCGAAGGCCGTGAAATCGATTTCCGCAACACCCTGATCAT
CCTGACCAGCAATGTCGGTTCGACGCAGATCATGCAGTCCTGTCTGAACAAGCCGGCCGAAGAACTGCCGGAAGCCGATG
CGCTGGCCGATGCCCTGCGCCCGATCCTGTTCAAGTCCTTCAAGCCGGCCTTCCTTGGCCGTATGAAGGTGGTTCCTTAC
TACCCGATCTCCGACGACGTGCTGGTCAGCATCATCGAACTCAAGCTCGGCCGCATCCGTGACCGGATTGCCGCCAACCA
CAAGGCTGAGTTCATCTGGGACGACAAGCTGGTCGAAGCCGTGCTGGCTCGCTGCACAGAGGTCGATTCCGGGGCGCGCA
ACGTCGATCACATCCTCAACGGCACCCTGTTGCCCGAGATCGCCGAGGTGGTATTGGCCCGCATGGCTGAAGGCGCTGCG
GTCGAGCGCATCAAGGTAGGGGCCGGCAAGAGCGGTGAATTCAAATACGCCATCAAGTAA

Upstream 100 bases:

>100_bases
TGGGTTACGACAGCTTCATGCTGACTAGTCCGGAAACAAACGACCGCAGCGATACCCGCTATCTCACCAATTTCATTCAC
TAAGACAACGAACGACCGCG

Downstream 100 bases:

>100_bases
GCGGCGCATTCCATCGGTCAAGGAACTGGAGAGCTATGCATGTTTAACCTGAACTACGCCAACTTTGCCAATGCCTACCG
GCGTTATACCGCGCTGGACA

Product: AAA ATPase, central region:Clp, N terminal

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 899; Mature: 898

Protein sequence:

>899_residues
MSTSLKTLISKLNSTCRQAAERAASLCMSRGNYEVDLEHLLIAILENPGADLLVIGKRCGISPTGLERELNQEIDRFKTG
NTRTPVFSTHILKLFEQAWLIASLDARLPRIRSGHLLLALLTEPELSQLAFRGSKLLGKVRLDELKHNFDQMTEGSAEAA
EVAGLAASAEGGDESDPLLAGSPQGGKTPALDQFTTNLTQRARDGKVDPVIGRDSEIRQVIDILMRRRQNNPILTGEAGV
GKTAVVEGLALRIAQDDVPPPLLGVELHTLDMGLLQAGASVKGEFENRLKNVIDEVKKSVKPIILFIDEAHTMIGAGGQS
GQNDAANLLKPALARGELRTVAATTWAEYKKYFEKDAALARRFQGVKVEEPTEILASAMLRGMVPLMEKHFGIRVLDEAV
TEAVRLSHRYISGRQLPDKAISVLDTACAKVALGQSATPALIDEADKRLLRERAELAALEREAASGAWHDTRIKELKAQI
SAIESDLSIFKTRFEEEKTLVNRVLELRGQLENGEVAVDAAPKPKARARKKGEGEAVGDSELDKALARLRELQGESPMVP
LQVDGHVVAEIIAAWTGIPLGKMVKNEINTVLNLKPLLKERVIGQDHALEAVAQRVRTARAYLEDPNKPKGVFMFVGPSG
VGKTETALALADILYGGERKLVTINMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLE
LFFQVFDKGVLDDAEGREIDFRNTLIILTSNVGSTQIMQSCLNKPAEELPEADALADALRPILFKSFKPAFLGRMKVVPY
YPISDDVLVSIIELKLGRIRDRIAANHKAEFIWDDKLVEAVLARCTEVDSGARNVDHILNGTLLPEIAEVVLARMAEGAA
VERIKVGAGKSGEFKYAIK

Sequences:

>Translated_899_residues
MSTSLKTLISKLNSTCRQAAERAASLCMSRGNYEVDLEHLLIAILENPGADLLVIGKRCGISPTGLERELNQEIDRFKTG
NTRTPVFSTHILKLFEQAWLIASLDARLPRIRSGHLLLALLTEPELSQLAFRGSKLLGKVRLDELKHNFDQMTEGSAEAA
EVAGLAASAEGGDESDPLLAGSPQGGKTPALDQFTTNLTQRARDGKVDPVIGRDSEIRQVIDILMRRRQNNPILTGEAGV
GKTAVVEGLALRIAQDDVPPPLLGVELHTLDMGLLQAGASVKGEFENRLKNVIDEVKKSVKPIILFIDEAHTMIGAGGQS
GQNDAANLLKPALARGELRTVAATTWAEYKKYFEKDAALARRFQGVKVEEPTEILASAMLRGMVPLMEKHFGIRVLDEAV
TEAVRLSHRYISGRQLPDKAISVLDTACAKVALGQSATPALIDEADKRLLRERAELAALEREAASGAWHDTRIKELKAQI
SAIESDLSIFKTRFEEEKTLVNRVLELRGQLENGEVAVDAAPKPKARARKKGEGEAVGDSELDKALARLRELQGESPMVP
LQVDGHVVAEIIAAWTGIPLGKMVKNEINTVLNLKPLLKERVIGQDHALEAVAQRVRTARAYLEDPNKPKGVFMFVGPSG
VGKTETALALADILYGGERKLVTINMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLE
LFFQVFDKGVLDDAEGREIDFRNTLIILTSNVGSTQIMQSCLNKPAEELPEADALADALRPILFKSFKPAFLGRMKVVPY
YPISDDVLVSIIELKLGRIRDRIAANHKAEFIWDDKLVEAVLARCTEVDSGARNVDHILNGTLLPEIAEVVLARMAEGAA
VERIKVGAGKSGEFKYAIK
>Mature_898_residues
STSLKTLISKLNSTCRQAAERAASLCMSRGNYEVDLEHLLIAILENPGADLLVIGKRCGISPTGLERELNQEIDRFKTGN
TRTPVFSTHILKLFEQAWLIASLDARLPRIRSGHLLLALLTEPELSQLAFRGSKLLGKVRLDELKHNFDQMTEGSAEAAE
VAGLAASAEGGDESDPLLAGSPQGGKTPALDQFTTNLTQRARDGKVDPVIGRDSEIRQVIDILMRRRQNNPILTGEAGVG
KTAVVEGLALRIAQDDVPPPLLGVELHTLDMGLLQAGASVKGEFENRLKNVIDEVKKSVKPIILFIDEAHTMIGAGGQSG
QNDAANLLKPALARGELRTVAATTWAEYKKYFEKDAALARRFQGVKVEEPTEILASAMLRGMVPLMEKHFGIRVLDEAVT
EAVRLSHRYISGRQLPDKAISVLDTACAKVALGQSATPALIDEADKRLLRERAELAALEREAASGAWHDTRIKELKAQIS
AIESDLSIFKTRFEEEKTLVNRVLELRGQLENGEVAVDAAPKPKARARKKGEGEAVGDSELDKALARLRELQGESPMVPL
QVDGHVVAEIIAAWTGIPLGKMVKNEINTVLNLKPLLKERVIGQDHALEAVAQRVRTARAYLEDPNKPKGVFMFVGPSGV
GKTETALALADILYGGERKLVTINMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEL
FFQVFDKGVLDDAEGREIDFRNTLIILTSNVGSTQIMQSCLNKPAEELPEADALADALRPILFKSFKPAFLGRMKVVPYY
PISDDVLVSIIELKLGRIRDRIAANHKAEFIWDDKLVEAVLARCTEVDSGARNVDHILNGTLLPEIAEVVLARMAEGAAV
ERIKVGAGKSGEFKYAIK

Specific function: Required for secretion of hcp1 probably by providing the energy source for its translocation [H]

COG id: COG0542

COG function: function code O; ATPases with chaperone activity, ATP-binding subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the clpA/clpB family [H]

Homologues:

Organism=Homo sapiens, GI13540606, Length=317, Percent_Identity=35.0157728706625, Blast_Score=180, Evalue=5e-45,
Organism=Escherichia coli, GI1788943, Length=839, Percent_Identity=38.7365911799762, Blast_Score=534, Evalue=1e-153,
Organism=Escherichia coli, GI1787109, Length=416, Percent_Identity=38.4615384615385, Blast_Score=244, Evalue=2e-65,
Organism=Saccharomyces cerevisiae, GI6320464, Length=702, Percent_Identity=38.4615384615385, Blast_Score=462, Evalue=1e-130,
Organism=Saccharomyces cerevisiae, GI6323002, Length=790, Percent_Identity=34.4303797468354, Blast_Score=441, Evalue=1e-124,

Paralogues:

None

Copy number: 560 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR003959
- InterPro:   IPR017729
- InterPro:   IPR018368
- InterPro:   IPR001270
- InterPro:   IPR019489
- InterPro:   IPR023150 [H]

Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF10431 ClpB_D2-small [H]

EC number: NA

Molecular weight: Translated: 97964; Mature: 97833

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: PS00039 DEAD_ATP_HELICASE ; PS00870 CLPAB_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTSLKTLISKLNSTCRQAAERAASLCMSRGNYEVDLEHLLIAILENPGADLLVIGKRCG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCEEEECCCCC
ISPTGLERELNQEIDRFKTGNTRTPVFSTHILKLFEQAWLIASLDARLPRIRSGHLLLAL
CCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
LTEPELSQLAFRGSKLLGKVRLDELKHNFDQMTEGSAEAAEVAGLAASAEGGDESDPLLA
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCEEE
GSPQGGKTPALDQFTTNLTQRARDGKVDPVIGRDSEIRQVIDILMRRRQNNPILTGEAGV
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCC
GKTAVVEGLALRIAQDDVPPPLLGVELHTLDMGLLQAGASVKGEFENRLKNVIDEVKKSV
CHHHHHHHHHHHEECCCCCCCEECCEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
KPIILFIDEAHTMIGAGGQSGQNDAANLLKPALARGELRTVAATTWAEYKKYFEKDAALA
CEEEEEEECHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
RRFQGVKVEEPTEILASAMLRGMVPLMEKHFGIRVLDEAVTEAVRLSHRYISGRQLPDKA
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH
ISVLDTACAKVALGQSATPALIDEADKRLLRERAELAALEREAASGAWHDTRIKELKAQI
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
SAIESDLSIFKTRFEEEKTLVNRVLELRGQLENGEVAVDAAPKPKARARKKGEGEAVGDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHCCCCCCCCCHH
ELDKALARLRELQGESPMVPLQVDGHVVAEIIAAWTGIPLGKMVKNEINTVLNLKPLLKE
HHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
RVIGQDHALEAVAQRVRTARAYLEDPNKPKGVFMFVGPSGVGKTETALALADILYGGERK
HHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCE
LVTINMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLE
EEEEEHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHCCCCEEEEECCHHHCCHHHHH
LFFQVFDKGVLDDAEGREIDFRNTLIILTSNVGSTQIMQSCLNKPAEELPEADALADALR
HHHHHHCCCCCCCCCCCEEECCCEEEEEECCCCHHHHHHHHHCCCHHHCCCHHHHHHHHH
PILFKSFKPAFLGRMKVVPYYPISDDVLVSIIELKLGRIRDRIAANHKAEFIWDDKLVEA
HHHHHCCCHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHH
VLARCTEVDSGARNVDHILNGTLLPEIAEVVLARMAEGAAVERIKVGAGKSGEFKYAIK
HHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHEEEECCCCCCCEEEEEC
>Mature Secondary Structure 
STSLKTLISKLNSTCRQAAERAASLCMSRGNYEVDLEHLLIAILENPGADLLVIGKRCG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCEEEECCCCC
ISPTGLERELNQEIDRFKTGNTRTPVFSTHILKLFEQAWLIASLDARLPRIRSGHLLLAL
CCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
LTEPELSQLAFRGSKLLGKVRLDELKHNFDQMTEGSAEAAEVAGLAASAEGGDESDPLLA
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCEEE
GSPQGGKTPALDQFTTNLTQRARDGKVDPVIGRDSEIRQVIDILMRRRQNNPILTGEAGV
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCC
GKTAVVEGLALRIAQDDVPPPLLGVELHTLDMGLLQAGASVKGEFENRLKNVIDEVKKSV
CHHHHHHHHHHHEECCCCCCCEECCEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
KPIILFIDEAHTMIGAGGQSGQNDAANLLKPALARGELRTVAATTWAEYKKYFEKDAALA
CEEEEEEECHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
RRFQGVKVEEPTEILASAMLRGMVPLMEKHFGIRVLDEAVTEAVRLSHRYISGRQLPDKA
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH
ISVLDTACAKVALGQSATPALIDEADKRLLRERAELAALEREAASGAWHDTRIKELKAQI
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
SAIESDLSIFKTRFEEEKTLVNRVLELRGQLENGEVAVDAAPKPKARARKKGEGEAVGDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHCCCCCCCCCHH
ELDKALARLRELQGESPMVPLQVDGHVVAEIIAAWTGIPLGKMVKNEINTVLNLKPLLKE
HHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
RVIGQDHALEAVAQRVRTARAYLEDPNKPKGVFMFVGPSGVGKTETALALADILYGGERK
HHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCE
LVTINMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLE
EEEEEHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHCCCCEEEEECCHHHCCHHHHH
LFFQVFDKGVLDDAEGREIDFRNTLIILTSNVGSTQIMQSCLNKPAEELPEADALADALR
HHHHHHCCCCCCCCCCCEEECCCEEEEEECCCCHHHHHHHHHCCCHHHCCCHHHHHHHHH
PILFKSFKPAFLGRMKVVPYYPISDDVLVSIIELKLGRIRDRIAANHKAEFIWDDKLVEA
HHHHHCCCHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHH
VLARCTEVDSGARNVDHILNGTLLPEIAEVVLARMAEGAAVERIKVGAGKSGEFKYAIK
HHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHEEEECCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]