| Definition | Dechloromonas aromatica RCB, complete genome. |
|---|---|
| Accession | NC_007298 |
| Length | 4,501,104 |
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The map label for this gene is rne [H]
Identifier: 71907634
GI number: 71907634
Start: 2160082
End: 2162694
Strand: Reverse
Name: rne [H]
Synonym: Daro_2005
Alternate gene names: 71907634
Gene position: 2162694-2160082 (Counterclockwise)
Preceding gene: 71907638
Following gene: 71907631
Centisome position: 48.05
GC content: 59.55
Gene sequence:
>2613_bases ATGAAACGCATGCTATTCAATGCGACACAGGCGGAAGAACTCCGTGTCGCCATTGTCGATGGTCAAAAACTGATTGACCT CGACATTGAATCCGCCGCCAAGGAACAACGTAAAAGCAACATCTACAAAGGGGTCATCACCCGCATCGAACCGTCGCTCG AAGCCTGCTTCGTCGACTACGGTGCTGACCGACACGGCTTCCTTCCCTTCAAGGAAGTCTCCCGCGCCTTCTTCCAGCCA GGCACTGAAGTTGGTCGCGCCCGGATTCAGGATGCGCTGAAAGAAGGCCAGGAACTGATCATCCAGGTCGACAAGGACGA ACGTGGCAACAAGGGTGCCGCCCTAACCACCTATGTCTCGCTAGCCGGTCGCTATCTTGTTCTGATGCCGAACAACCCGC GCGGCGGTGGTGTTTCCCGCCGCGTTGACGGCGATGAGCGCGCTGAACTGCGCGACGTCATGGATCAGCTCGAAGTACCC AACGGCATGAGCCTGATCGCCCGCACCGCAGCCATTGGCCGCCAGGCCGAAGAGCTGCAGTGGGATTTGAATTACCTGCT GCAACTGTGGACCGCCATTGACGGTGCCGCCCAGCAACAGAGCGGCGCTTTCCTGATTTATCTGGAAGGCAGCCTGGTTA TCCGCGCGATTCGTGACTATTTCCAGCCCGATATCGGCGAAATTCTGATCGACACCGACGAAGTCTATGAGCAGGCTCGC GCCTTCATGGGCACGGTCATGCCGGGCAATATCAATCGCGTCAAGCGCTATCGCGATGATGTGCCACTGTTCTCGCGCTT CCAGATCGAACACCAGATCGAAACCGCCTTCGCTCGCCAGGTCAACCTGCCGTCCGGTGGCGCCATCGTTATCGATCACA CTGAAGCGCTGGTCGCCGTCGACGTCAACTCCGGTCGCGCCACCAAAGGTTCCGATATCGAAGAAACCGCATTCAAGACG AATCAGGAAGCAGCTGAAGAACTGGCCCGCCAGTTGCGTCTGCGCGACTTGGGCGGCCTGATCGTGATCGACTTCATCGA CATGGAAAACCAGAAGAACCAGCGTGAAGTCGAAAACCGCCTGCGCGATGCACTGCGTTTCGACCGTGCCCGAGTCCAAA TGGGCAAGATCAGCCGCTTCGGCCTGATGGAGCTATCCCGCCAGCGCCTGCGTCCGGCGCTTGCCGAAACCAGCTACATC CCCTGCCCGCGCTGCACCGGCACCGGCCACATCCGCTCCGCCGAATCGGCTGCCTTGCACATCCTGCGCATCCTTGAAGA AGAGGCGATGAAGGAAAATACCGGCGCCGTGCATGTCCAAGTTCCGGTTGATGTCGCCACCTTCCTGCTCAACGAAAAGC GCCCGGACATCCAGGCCATCGAGTTGCGTCATAAGGTCACCATTCTGTTGATTCCGAATGTTCATCTCGAAACGCCGGCC CACACCATTACCCGCCTGCGCCACGATGATCTGAACCAAGACGATCTTCGCGAGCCATCCTACAAGATGGTCGACATGCC GATCGAGGAAGCTATCAAGCAGGCAACCCAGGCGGAAGCCGCCAAACCTCGTCAGGAAGCTGCGATCAAGGGTATTTCCC CTGATCAGCCCGCACCGATCATGCCGGAAAAGGCCGAAGCGCCGGTTGCCGCGCCTGCTCAGCCAGAAGGCGGCTTGTTC TCGAAAATTTTCTCGTGGTTCCGCTCCTCACCCAAACCGGTTGAACCGGTCGCAGCTCCGGAGCCCGCCAAAAAGCCGCG CGAAGGTCGCGGGGATGGCCGTCGCGATGGTCGCCGCGGTGGCCGAAATGGCAATCGTCGCGACGAAGAGCGCGGCGAAC GCAAGGAACGTCCTGAGCGCAAGGAGCGCAATGCAGTCGACAAGGCTCCGCAAGACGGAACACCGGCCTCGAACGGCGAA CGCAAGGAACGCCGTCCGCGTGGTGAACGCAAGGAGCGCGGCGAACGCCAGCAGCAAGCGGAAACGGTTGAAAACAAGCT GGTTCAGCAAACAGCAGCCGCCGATGCCGCCGTTGCTCCGCTGCTGGCCAACGAAGCCCCAGACGCACAGGGCAACGAAG AGCAAGGCAATCGTCGTCGCGGTCGTCGCGGTGGCAGAGGTCGTGGCGAGCGTCGCAACGAGGCTGACTCCACTCCGGTG GCCGAGGTGCTACCAGTGATTGAGCCGGCTGTTGAGCCAATCAACCAAGAGCCGGTTGTCGTTGTAATCCCTGCGGCCGA ACCGGTTGTTGTCGCAGCCGAAGTTGTCACCCCGGTTGTTGAACCAGTGGCCTCGCCCATTGTTGAACCGGTTCAGGTTG CCGAAGTTATTGAAGCTGCCCCAGCTGCAATCATCGAAGCGCTTCCGGTCGAAATTCAGGAAAGCCCGAAAGCCGAAGCA CCTGCACCTGCTCCTGCTCCTGTCGTGGCAGAACCAGTCAATCTTGAAGCGACACTCGCTGAAAGCGGTTTGGTCATGGT TCAAACGACATCTGCTGCAGTCGCTGCTGCCCAGCCAGAACCCCCGGTCAAACTGGGTCGTCCGCGCAAGGCGAAACCGG CAAGCAAGCAGGCTGAAAGCGAATCGCTGGTCATGGTTGAAACCGCCAAATAA
Upstream 100 bases:
>100_bases CTTTGCCCACCATTTATGACGCAACCCGATAACTGAAACTGTCGCTGCCTGTAAGGGCGTTTCGTTGCAGCGTGCCGCTG TGCGCTGGAGCCCAAAAATA
Downstream 100 bases:
>100_bases CGGCTGAGTCAACCAATAAAAAGGGGCACCCTCGGGTGCCCCTTTTGTTTTCGTGGATCGATCAACTTCGCCCCAACTTT TGCTTGATCTCTTCAATCAA
Product: ribonuclease E
Products: NA
Alternate protein names: RNase E [H]
Number of amino acids: Translated: 870; Mature: 870
Protein sequence:
>870_residues MKRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKGVITRIEPSLEACFVDYGADRHGFLPFKEVSRAFFQP GTEVGRARIQDALKEGQELIIQVDKDERGNKGAALTTYVSLAGRYLVLMPNNPRGGGVSRRVDGDERAELRDVMDQLEVP NGMSLIARTAAIGRQAEELQWDLNYLLQLWTAIDGAAQQQSGAFLIYLEGSLVIRAIRDYFQPDIGEILIDTDEVYEQAR AFMGTVMPGNINRVKRYRDDVPLFSRFQIEHQIETAFARQVNLPSGGAIVIDHTEALVAVDVNSGRATKGSDIEETAFKT NQEAAEELARQLRLRDLGGLIVIDFIDMENQKNQREVENRLRDALRFDRARVQMGKISRFGLMELSRQRLRPALAETSYI PCPRCTGTGHIRSAESAALHILRILEEEAMKENTGAVHVQVPVDVATFLLNEKRPDIQAIELRHKVTILLIPNVHLETPA HTITRLRHDDLNQDDLREPSYKMVDMPIEEAIKQATQAEAAKPRQEAAIKGISPDQPAPIMPEKAEAPVAAPAQPEGGLF SKIFSWFRSSPKPVEPVAAPEPAKKPREGRGDGRRDGRRGGRNGNRRDEERGERKERPERKERNAVDKAPQDGTPASNGE RKERRPRGERKERGERQQQAETVENKLVQQTAAADAAVAPLLANEAPDAQGNEEQGNRRRGRRGGRGRGERRNEADSTPV AEVLPVIEPAVEPINQEPVVVVIPAAEPVVVAAEVVTPVVEPVASPIVEPVQVAEVIEAAPAAIIEALPVEIQESPKAEA PAPAPAPVVAEPVNLEATLAESGLVMVQTTSAAVAAAQPEPPVKLGRPRKAKPASKQAESESLVMVETAK
Sequences:
>Translated_870_residues MKRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKGVITRIEPSLEACFVDYGADRHGFLPFKEVSRAFFQP GTEVGRARIQDALKEGQELIIQVDKDERGNKGAALTTYVSLAGRYLVLMPNNPRGGGVSRRVDGDERAELRDVMDQLEVP NGMSLIARTAAIGRQAEELQWDLNYLLQLWTAIDGAAQQQSGAFLIYLEGSLVIRAIRDYFQPDIGEILIDTDEVYEQAR AFMGTVMPGNINRVKRYRDDVPLFSRFQIEHQIETAFARQVNLPSGGAIVIDHTEALVAVDVNSGRATKGSDIEETAFKT NQEAAEELARQLRLRDLGGLIVIDFIDMENQKNQREVENRLRDALRFDRARVQMGKISRFGLMELSRQRLRPALAETSYI PCPRCTGTGHIRSAESAALHILRILEEEAMKENTGAVHVQVPVDVATFLLNEKRPDIQAIELRHKVTILLIPNVHLETPA HTITRLRHDDLNQDDLREPSYKMVDMPIEEAIKQATQAEAAKPRQEAAIKGISPDQPAPIMPEKAEAPVAAPAQPEGGLF SKIFSWFRSSPKPVEPVAAPEPAKKPREGRGDGRRDGRRGGRNGNRRDEERGERKERPERKERNAVDKAPQDGTPASNGE RKERRPRGERKERGERQQQAETVENKLVQQTAAADAAVAPLLANEAPDAQGNEEQGNRRRGRRGGRGRGERRNEADSTPV AEVLPVIEPAVEPINQEPVVVVIPAAEPVVVAAEVVTPVVEPVASPIVEPVQVAEVIEAAPAAIIEALPVEIQESPKAEA PAPAPAPVVAEPVNLEATLAESGLVMVQTTSAAVAAAQPEPPVKLGRPRKAKPASKQAESESLVMVETAK >Mature_870_residues MKRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKGVITRIEPSLEACFVDYGADRHGFLPFKEVSRAFFQP GTEVGRARIQDALKEGQELIIQVDKDERGNKGAALTTYVSLAGRYLVLMPNNPRGGGVSRRVDGDERAELRDVMDQLEVP NGMSLIARTAAIGRQAEELQWDLNYLLQLWTAIDGAAQQQSGAFLIYLEGSLVIRAIRDYFQPDIGEILIDTDEVYEQAR AFMGTVMPGNINRVKRYRDDVPLFSRFQIEHQIETAFARQVNLPSGGAIVIDHTEALVAVDVNSGRATKGSDIEETAFKT NQEAAEELARQLRLRDLGGLIVIDFIDMENQKNQREVENRLRDALRFDRARVQMGKISRFGLMELSRQRLRPALAETSYI PCPRCTGTGHIRSAESAALHILRILEEEAMKENTGAVHVQVPVDVATFLLNEKRPDIQAIELRHKVTILLIPNVHLETPA HTITRLRHDDLNQDDLREPSYKMVDMPIEEAIKQATQAEAAKPRQEAAIKGISPDQPAPIMPEKAEAPVAAPAQPEGGLF SKIFSWFRSSPKPVEPVAAPEPAKKPREGRGDGRRDGRRGGRNGNRRDEERGERKERPERKERNAVDKAPQDGTPASNGE RKERRPRGERKERGERQQQAETVENKLVQQTAAADAAVAPLLANEAPDAQGNEEQGNRRRGRRGGRGRGERRNEADSTPV AEVLPVIEPAVEPINQEPVVVVIPAAEPVVVAAEVVTPVVEPVASPIVEPVQVAEVIEAAPAAIIEALPVEIQESPKAEA PAPAPAPVVAEPVNLEATLAESGLVMVQTTSAAVAAAQPEPPVKLGRPRKAKPASKQAESESLVMVETAK
Specific function: Matures 5S rRNA from its precursors from all the rRNA genes. Major endoribonuclease participating in mRNA turnover. It initiates the decay of RNAs by cutting them internally near their 5'-end. It is able to remove poly(A) tails by an endonucleolytic proce
COG id: COG1530
COG function: function code J; Ribonucleases G and E
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S1 motif domain [H]
Homologues:
Organism=Escherichia coli, GI87082235, Length=430, Percent_Identity=36.046511627907, Blast_Score=240, Evalue=3e-64,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR021968 - InterPro: IPR003029 - InterPro: IPR019307 - InterPro: IPR022967 - InterPro: IPR004659 [H]
Pfam domain/function: PF12111 PNPase_C; PF10150 RNase_E_G; PF00575 S1 [H]
EC number: =3.1.26.12 [H]
Molecular weight: Translated: 95775; Mature: 95775
Theoretical pI: Translated: 5.33; Mature: 5.33
Prosite motif: PS50126 S1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKGVITRIEPSLEACFVDY CCCCCCCCCCCCCEEEEEECCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCC GADRHGFLPFKEVSRAFFQPGTEVGRARIQDALKEGQELIIQVDKDERGNKGAALTTYVS CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHH LAGRYLVLMPNNPRGGGVSRRVDGDERAELRDVMDQLEVPNGMSLIARTAAIGRQAEELQ HHCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHH WDLNYLLQLWTAIDGAAQQQSGAFLIYLEGSLVIRAIRDYFQPDIGEILIDTDEVYEQAR HHHHHHHHHHHHHCCHHHHCCCEEEEEECCHHHHHHHHHHHCCCCHHEEECCHHHHHHHH AFMGTVMPGNINRVKRYRDDVPLFSRFQIEHQIETAFARQVNLPSGGAIVIDHTEALVAV HHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEE DVNSGRATKGSDIEETAFKTNQEAAEELARQLRLRDLGGLIVIDFIDMENQKNQREVENR ECCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHH LRDALRFDRARVQMGKISRFGLMELSRQRLRPALAETSYIPCPRCTGTGHIRSAESAALH HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH ILRILEEEAMKENTGAVHVQVPVDVATFLLNEKRPDIQAIELRHKVTILLIPNVHLETPA HHHHHHHHHHHCCCCEEEEEECHHHHHHHHCCCCCCHHHEEEEEEEEEEEECCCCCCCCH HTITRLRHDDLNQDDLREPSYKMVDMPIEEAIKQATQAEAAKPRQEAAIKGISPDQPAPI HHHHHHHHCCCCHHHCCCCCCEEECCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCC MPEKAEAPVAAPAQPEGGLFSKIFSWFRSSPKPVEPVAAPEPAKKPREGRGDGRRDGRRG CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GRNGNRRDEERGERKERPERKERNAVDKAPQDGTPASNGERKERRPRGERKERGERQQQA CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHH ETVENKLVQQTAAADAAVAPLLANEAPDAQGNEEQGNRRRGRRGGRGRGERRNEADSTPV HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCH AEVLPVIEPAVEPINQEPVVVVIPAAEPVVVAAEVVTPVVEPVASPIVEPVQVAEVIEAA HHHHHHHHHHHCCCCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PAAIIEALPVEIQESPKAEAPAPAPAPVVAEPVNLEATLAESGLVMVQTTSAAVAAAQPE HHHHHHHCCCHHCCCCCCCCCCCCCCCCEECCCCCEEEECCCCEEEEEECCHHEEECCCC PPVKLGRPRKAKPASKQAESESLVMVETAK CCCCCCCCCCCCCCCCCCCCCCEEEEEECC >Mature Secondary Structure MKRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKGVITRIEPSLEACFVDY CCCCCCCCCCCCCEEEEEECCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCC GADRHGFLPFKEVSRAFFQPGTEVGRARIQDALKEGQELIIQVDKDERGNKGAALTTYVS CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHH LAGRYLVLMPNNPRGGGVSRRVDGDERAELRDVMDQLEVPNGMSLIARTAAIGRQAEELQ HHCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHH WDLNYLLQLWTAIDGAAQQQSGAFLIYLEGSLVIRAIRDYFQPDIGEILIDTDEVYEQAR HHHHHHHHHHHHHCCHHHHCCCEEEEEECCHHHHHHHHHHHCCCCHHEEECCHHHHHHHH AFMGTVMPGNINRVKRYRDDVPLFSRFQIEHQIETAFARQVNLPSGGAIVIDHTEALVAV HHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEE DVNSGRATKGSDIEETAFKTNQEAAEELARQLRLRDLGGLIVIDFIDMENQKNQREVENR ECCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHH LRDALRFDRARVQMGKISRFGLMELSRQRLRPALAETSYIPCPRCTGTGHIRSAESAALH HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH ILRILEEEAMKENTGAVHVQVPVDVATFLLNEKRPDIQAIELRHKVTILLIPNVHLETPA HHHHHHHHHHHCCCCEEEEEECHHHHHHHHCCCCCCHHHEEEEEEEEEEEECCCCCCCCH HTITRLRHDDLNQDDLREPSYKMVDMPIEEAIKQATQAEAAKPRQEAAIKGISPDQPAPI HHHHHHHHCCCCHHHCCCCCCEEECCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCC MPEKAEAPVAAPAQPEGGLFSKIFSWFRSSPKPVEPVAAPEPAKKPREGRGDGRRDGRRG CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GRNGNRRDEERGERKERPERKERNAVDKAPQDGTPASNGERKERRPRGERKERGERQQQA CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHH ETVENKLVQQTAAADAAVAPLLANEAPDAQGNEEQGNRRRGRRGGRGRGERRNEADSTPV HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCH AEVLPVIEPAVEPINQEPVVVVIPAAEPVVVAAEVVTPVVEPVASPIVEPVQVAEVIEAA HHHHHHHHHHHCCCCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PAAIIEALPVEIQESPKAEAPAPAPAPVVAEPVNLEATLAESGLVMVQTTSAAVAAAQPE HHHHHHHCCCHHCCCCCCCCCCCCCCCCEECCCCCEEEECCCCEEEEEECCHHEEECCCC PPVKLGRPRKAKPASKQAESESLVMVETAK CCCCCCCCCCCCCCCCCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]