| Definition | Dechloromonas aromatica RCB, complete genome. |
|---|---|
| Accession | NC_007298 |
| Length | 4,501,104 |
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The map label for this gene is serB [H]
Identifier: 71907591
GI number: 71907591
Start: 2109117
End: 2109956
Strand: Reverse
Name: serB [H]
Synonym: Daro_1962
Alternate gene names: 71907591
Gene position: 2109956-2109117 (Counterclockwise)
Preceding gene: 71907592
Following gene: 71907575
Centisome position: 46.88
GC content: 61.43
Gene sequence:
>840_bases ATGAACCTGATCATCCAGGGCGGCGCCCTACCCACCTTTTTGCTCGAACGTATCGTCGCGGCGACCGGCGCCATAGCCGT CGAACCCCGACCACCGCAGGTTGTCCGGCTGAAAGGTGCAACTCGCACCCCGGATTTCGATGCCCTGATTCCGCTGATCG AAGCCGAGAAGCTCGACTGGGCGTTCGCCGAAGCCGACAAGAAGCTGTCCGACTTCGGCCTGATCTGCTTCGACATGGAT TCGACGCTGATCACCATTGAATGCATCGACGAACTGGCTGATTTCGCCGGCAAAAAGGACGAAGTGTCGGCCGTCACCGA AGCGGCCATGCGCGGCGAAATCGATTACCGCGAAAGCCTGCGCCGCCGCCTGTCGCTGCTGGCCGGCCTGGATGCCCGCG TCCTGGCCAGGGTTTTCGGCGAACGCCTGCTGCTCTCACCCGGTGCCCGCGAACTCCTCGAAGCCTGCCAGAACGCTGGC CTGCGCACCGCAATCCTGTCTGGGGGATTTACCTATTTCACCGAGCGTCTGCGTATCGAACTGGGTTTCGACTTTGCTAC GTCAAACGAACTGGAAATTTCCGGCGGCAAGCTGACCGGACGCGTCGTCGGCGATATTGTCGATGCCACCGCCAAGGCCC ATCACCTCGCTCGCCTGACCGATGAACTGGGCCTGAAGAAGGAACAGGTCATCGCCTGTGGCGACGGTGCCAATGACTTG ATGATGATGGCCCAAGCCGGCCTGTCGGTCGCTTTCCGTGCCAAGCCGGCCACCCGTGCCAAGGCCGACGTGGCCATCAA TTTCGGTGGGCTGGATTCGCTGCTCAATCTGTTCGACTGA
Upstream 100 bases:
>100_bases TCGGTGGCATACTGGGTGCCCTCGCCATCGGCATATTCCTTCGTTTCAAGCGTGGCCGCGTCGCGAACTGACGATGGCCG GATTTGCCTAGACTGACACC
Downstream 100 bases:
>100_bases GCAGCGGGCAGTCAGGTCTTCCTGACCAGCTGCTTGGCAAACGCGGCGTCGTTCTTGGTGACGCGAGGTACAACTTGCGG CCCGGTGGCATTGACCAGAC
Product: phosphoserine phosphatase
Products: NA
Alternate protein names: PSP; PSPase; O-phosphoserine phosphohydrolase [H]
Number of amino acids: Translated: 279; Mature: 279
Protein sequence:
>279_residues MNLIIQGGALPTFLLERIVAATGAIAVEPRPPQVVRLKGATRTPDFDALIPLIEAEKLDWAFAEADKKLSDFGLICFDMD STLITIECIDELADFAGKKDEVSAVTEAAMRGEIDYRESLRRRLSLLAGLDARVLARVFGERLLLSPGARELLEACQNAG LRTAILSGGFTYFTERLRIELGFDFATSNELEISGGKLTGRVVGDIVDATAKAHHLARLTDELGLKKEQVIACGDGANDL MMMAQAGLSVAFRAKPATRAKADVAINFGGLDSLLNLFD
Sequences:
>Translated_279_residues MNLIIQGGALPTFLLERIVAATGAIAVEPRPPQVVRLKGATRTPDFDALIPLIEAEKLDWAFAEADKKLSDFGLICFDMD STLITIECIDELADFAGKKDEVSAVTEAAMRGEIDYRESLRRRLSLLAGLDARVLARVFGERLLLSPGARELLEACQNAG LRTAILSGGFTYFTERLRIELGFDFATSNELEISGGKLTGRVVGDIVDATAKAHHLARLTDELGLKKEQVIACGDGANDL MMMAQAGLSVAFRAKPATRAKADVAINFGGLDSLLNLFD >Mature_279_residues MNLIIQGGALPTFLLERIVAATGAIAVEPRPPQVVRLKGATRTPDFDALIPLIEAEKLDWAFAEADKKLSDFGLICFDMD STLITIECIDELADFAGKKDEVSAVTEAAMRGEIDYRESLRRRLSLLAGLDARVLARVFGERLLLSPGARELLEACQNAG LRTAILSGGFTYFTERLRIELGFDFATSNELEISGGKLTGRVVGDIVDATAKAHHLARLTDELGLKKEQVIACGDGANDL MMMAQAGLSVAFRAKPATRAKADVAINFGGLDSLLNLFD
Specific function: Unknown
COG id: COG0560
COG function: function code E; Phosphoserine phosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the serB family [H]
Homologues:
Organism=Homo sapiens, GI46249388, Length=182, Percent_Identity=29.6703296703297, Blast_Score=76, Evalue=3e-14, Organism=Escherichia coli, GI1790849, Length=244, Percent_Identity=46.3114754098361, Blast_Score=183, Evalue=1e-47, Organism=Saccharomyces cerevisiae, GI6321647, Length=206, Percent_Identity=38.3495145631068, Blast_Score=145, Evalue=8e-36, Organism=Drosophila melanogaster, GI24661601, Length=197, Percent_Identity=27.9187817258883, Blast_Score=68, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006383 - InterPro: IPR023190 - InterPro: IPR004469 [H]
Pfam domain/function: PF00702 Hydrolase [H]
EC number: =3.1.3.3 [H]
Molecular weight: Translated: 30098; Mature: 30098
Theoretical pI: Translated: 4.69; Mature: 4.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLIIQGGALPTFLLERIVAATGAIAVEPRPPQVVRLKGATRTPDFDALIPLIEAEKLDW CCEEEECCCCHHHHHHHHHHHCCCEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCH AFAEADKKLSDFGLICFDMDSTLITIECIDELADFAGKKDEVSAVTEAAMRGEIDYRESL HHHHHHCCHHHCCEEEEECCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHH RRRLSLLAGLDARVLARVFGERLLLSPGARELLEACQNAGLRTAILSGGFTYFTERLRIE HHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEHHCCCHHHHHEEEEEE LGFDFATSNELEISGGKLTGRVVGDIVDATAKAHHLARLTDELGLKKEQVIACGDGANDL EECCEECCCEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEECCCCHHH MMMAQAGLSVAFRAKPATRAKADVAINFGGLDSLLNLFD HHHHHCCCEEEEECCCCCCCCCEEEEEECCHHHHHHHCC >Mature Secondary Structure MNLIIQGGALPTFLLERIVAATGAIAVEPRPPQVVRLKGATRTPDFDALIPLIEAEKLDW CCEEEECCCCHHHHHHHHHHHCCCEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCH AFAEADKKLSDFGLICFDMDSTLITIECIDELADFAGKKDEVSAVTEAAMRGEIDYRESL HHHHHHCCHHHCCEEEEECCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHH RRRLSLLAGLDARVLARVFGERLLLSPGARELLEACQNAGLRTAILSGGFTYFTERLRIE HHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEHHCCCHHHHHEEEEEE LGFDFATSNELEISGGKLTGRVVGDIVDATAKAHHLARLTDELGLKKEQVIACGDGANDL EECCEECCCEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEECCCCHHH MMMAQAGLSVAFRAKPATRAKADVAINFGGLDSLLNLFD HHHHHCCCEEEEECCCCCCCCCEEEEEECCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]