| Definition | Dechloromonas aromatica RCB, complete genome. |
|---|---|
| Accession | NC_007298 |
| Length | 4,501,104 |
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The map label for this gene is menB [H]
Identifier: 71907247
GI number: 71907247
Start: 1734524
End: 1735348
Strand: Reverse
Name: menB [H]
Synonym: Daro_1616
Alternate gene names: 71907247
Gene position: 1735348-1734524 (Counterclockwise)
Preceding gene: 71907248
Following gene: 71907246
Centisome position: 38.55
GC content: 61.58
Gene sequence:
>825_bases ATGACCAACAGCATCCGCTGGCATAGCGCCCATATCTATTCCGACATCCTCTACGAAACCAGCGAGGGGATTGCCAAGAT CACCATCAACCGGCCGGAACGGCGCAATGCCTTCCGCCCGGAGACCGTCAGTGAATTGATCGATGCCTTTCACCGTGCCC ATCACGACAACGCTATTGGCGCCATCATCCTGACCGGTGCCGGCAACGAAGCCTTCTGCTCTGGTGGTGATCAAAAGGTG CGCGGCGAAGAAGGCTATATTGACGAAGGTGGCACGCCGCACCTGAACGTCCTCGATCTGCAAATGCAGATTCGCCGCCT GCCCAAGCCTGTCGTCGCCATGGTCGCCGGCTACGCGATCGGTGGCGGCCATGTGCTGCACCTTGTTTGCGACCTTTCTA TCGCTGCCGACAACGCCCGCTTCGGCCAGACCGGACCGCGCGTCGGCAGTTTCGATGCCGGCCTTGGCGCGGGGCTGATG GCACGCACCATTGGACTGAAACGAGCCAAAGAGGTCTGGCTGCTCTGCCGCCAGTACGATGCCACCACTGCACTCGACTG GGGCTTGGTCAATGCCGTCGTTCCCGTCGAAAAGCTGGAAGCCGAAACCGTGGCCTGGTGCCGCGATATGCTGCAACTGT CGCCGATGGCACTGCGCATGATCAAGGCCGGCTTCAACGCCGATACCGACGGCCTGGCTGGCATCCAAGAACTTGCCGGC AACGCCACCGGCCTCTTCTACATGAGCGAGGAAGGGCAGGAAGGCCGCAATGCCTGGCTCGAACGCCGGCCACCCGATTT TGGCAAGTACCGCAAGCGGCCGTGA
Upstream 100 bases:
>100_bases GCAAACTGGAAGCGCCGGCCATCCAGTCACGGCAAGGCAGATCAATTCCGTCAAGCCCGGCTGACGATATACTTCGGCCA TTGCAATCCAATGCCGAATC
Downstream 100 bases:
>100_bases ACATCGCTGCAGCCGACTGGCAGCCCTACCAGCTCCCGTTAAATCGGCCTTGGCAAACCAGCCGGGGAACATTATTCGAG CGTTGCGGCCGCCTGCTTCG
Product: naphthoate synthase
Products: NA
Alternate protein names: DHNA-CoA synthase [H]
Number of amino acids: Translated: 274; Mature: 273
Protein sequence:
>274_residues MTNSIRWHSAHIYSDILYETSEGIAKITINRPERRNAFRPETVSELIDAFHRAHHDNAIGAIILTGAGNEAFCSGGDQKV RGEEGYIDEGGTPHLNVLDLQMQIRRLPKPVVAMVAGYAIGGGHVLHLVCDLSIAADNARFGQTGPRVGSFDAGLGAGLM ARTIGLKRAKEVWLLCRQYDATTALDWGLVNAVVPVEKLEAETVAWCRDMLQLSPMALRMIKAGFNADTDGLAGIQELAG NATGLFYMSEEGQEGRNAWLERRPPDFGKYRKRP
Sequences:
>Translated_274_residues MTNSIRWHSAHIYSDILYETSEGIAKITINRPERRNAFRPETVSELIDAFHRAHHDNAIGAIILTGAGNEAFCSGGDQKV RGEEGYIDEGGTPHLNVLDLQMQIRRLPKPVVAMVAGYAIGGGHVLHLVCDLSIAADNARFGQTGPRVGSFDAGLGAGLM ARTIGLKRAKEVWLLCRQYDATTALDWGLVNAVVPVEKLEAETVAWCRDMLQLSPMALRMIKAGFNADTDGLAGIQELAG NATGLFYMSEEGQEGRNAWLERRPPDFGKYRKRP >Mature_273_residues TNSIRWHSAHIYSDILYETSEGIAKITINRPERRNAFRPETVSELIDAFHRAHHDNAIGAIILTGAGNEAFCSGGDQKVR GEEGYIDEGGTPHLNVLDLQMQIRRLPKPVVAMVAGYAIGGGHVLHLVCDLSIAADNARFGQTGPRVGSFDAGLGAGLMA RTIGLKRAKEVWLLCRQYDATTALDWGLVNAVVPVEKLEAETVAWCRDMLQLSPMALRMIKAGFNADTDGLAGIQELAGN ATGLFYMSEEGQEGRNAWLERRPPDFGKYRKRP
Specific function: Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA) [H]
COG id: COG0447
COG function: function code H; Dihydroxynaphthoic acid synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the enoyl-CoA hydratase/isomerase family [H]
Homologues:
Organism=Homo sapiens, GI194097323, Length=244, Percent_Identity=31.5573770491803, Blast_Score=107, Evalue=9e-24, Organism=Homo sapiens, GI31542718, Length=246, Percent_Identity=32.1138211382114, Blast_Score=95, Evalue=6e-20, Organism=Homo sapiens, GI45643119, Length=213, Percent_Identity=26.7605633802817, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI260275230, Length=213, Percent_Identity=26.7605633802817, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI260274832, Length=213, Percent_Identity=26.7605633802817, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI4757966, Length=226, Percent_Identity=25.6637168141593, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI51538581, Length=226, Percent_Identity=25.6637168141593, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI25453481, Length=226, Percent_Identity=25.6637168141593, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI51538573, Length=226, Percent_Identity=25.6637168141593, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI4502327, Length=263, Percent_Identity=28.5171102661597, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI213417737, Length=210, Percent_Identity=25.7142857142857, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI157694516, Length=210, Percent_Identity=25.7142857142857, Blast_Score=68, Evalue=9e-12, Organism=Escherichia coli, GI1788597, Length=273, Percent_Identity=67.7655677655678, Blast_Score=380, Evalue=1e-107, Organism=Escherichia coli, GI1787659, Length=259, Percent_Identity=28.1853281853282, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1787660, Length=259, Percent_Identity=32.046332046332, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI87082183, Length=256, Percent_Identity=28.515625, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI221142681, Length=214, Percent_Identity=30.8411214953271, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1788682, Length=177, Percent_Identity=27.683615819209, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17554946, Length=249, Percent_Identity=29.718875502008, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI25145438, Length=246, Percent_Identity=30.0813008130081, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17540714, Length=220, Percent_Identity=27.2727272727273, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17560910, Length=169, Percent_Identity=33.1360946745562, Blast_Score=87, Evalue=8e-18, Organism=Caenorhabditis elegans, GI17535521, Length=215, Percent_Identity=28.8372093023256, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17549921, Length=207, Percent_Identity=24.6376811594203, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI20129971, Length=260, Percent_Identity=29.6153846153846, Blast_Score=103, Evalue=2e-22, Organism=Drosophila melanogaster, GI24653477, Length=260, Percent_Identity=29.6153846153846, Blast_Score=103, Evalue=2e-22, Organism=Drosophila melanogaster, GI24653139, Length=283, Percent_Identity=27.9151943462898, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI21357171, Length=186, Percent_Identity=36.0215053763441, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI19922422, Length=267, Percent_Identity=24.3445692883895, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI24650670, Length=184, Percent_Identity=29.8913043478261, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014748 - InterPro: IPR001753 - InterPro: IPR018376 - InterPro: IPR010198 [H]
Pfam domain/function: PF00378 ECH [H]
EC number: =4.1.3.36 [H]
Molecular weight: Translated: 30001; Mature: 29869
Theoretical pI: Translated: 6.72; Mature: 6.72
Prosite motif: PS00166 ENOYL_COA_HYDRATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNSIRWHSAHIYSDILYETSEGIAKITINRPERRNAFRPETVSELIDAFHRAHHDNAIG CCCCCEEHHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCCHHHHHHHHHHHHHCCCCCEE AIILTGAGNEAFCSGGDQKVRGEEGYIDEGGTPHLNVLDLQMQIRRLPKPVVAMVAGYAI EEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCHHHHHHHHHHCC GGGHVLHLVCDLSIAADNARFGQTGPRVGSFDAGLGAGLMARTIGLKRAKEVWLLCRQYD CCCCEEEEEEHHHEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC ATTALDWGLVNAVVPVEKLEAETVAWCRDMLQLSPMALRMIKAGFNADTDGLAGIQELAG CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHCC NATGLFYMSEEGQEGRNAWLERRPPDFGKYRKRP CCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure TNSIRWHSAHIYSDILYETSEGIAKITINRPERRNAFRPETVSELIDAFHRAHHDNAIG CCCCEEHHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCCHHHHHHHHHHHHHCCCCCEE AIILTGAGNEAFCSGGDQKVRGEEGYIDEGGTPHLNVLDLQMQIRRLPKPVVAMVAGYAI EEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCHHHHHHHHHHCC GGGHVLHLVCDLSIAADNARFGQTGPRVGSFDAGLGAGLMARTIGLKRAKEVWLLCRQYD CCCCEEEEEEHHHEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC ATTALDWGLVNAVVPVEKLEAETVAWCRDMLQLSPMALRMIKAGFNADTDGLAGIQELAG CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHCC NATGLFYMSEEGQEGRNAWLERRPPDFGKYRKRP CCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]