Click here to switch to the map view.

The map label for this gene is yafS [H]

Identifier: 71907226

GI number: 71907226

Start: 1709549

End: 1710265

Strand: Reverse

Name: yafS [H]

Synonym: Daro_1594

Alternate gene names: 71907226

Gene position: 1710265-1709549 (Counterclockwise)

Preceding gene: 71907228

Following gene: 71907225

Centisome position: 38.0

GC content: 57.04

Gene sequence:

>717_bases
ATGTCAATTCCCGGAATGGATGCCTGGCTGGCCTCGGCCCCCGGTCGCTACGTACTGGATTGGGAGCAGCGCCAGCTTGA
TGGCATCGTCGCTGACATTTTCGGTTTCAACGCCTTGCAACTCGGCCTGCCTCAGGGCGATTTTCTGCGCGCCAATCGCA
TCCCGCTACGTCAGCAGGCCGGTGAATATGGTCAGGTTGACGTGCTATGCAACTACACCGCCCTGCCCTTTGCCTCGAAC
AGCATCGACCTCGTTGTCCTGCCGCATATTCTCGAATTCAGCGACGAACCGCACCAGATCCTGCGTGAAGTCGAGCGCAT
CCTGATCCCCGAGGGCCAGGTCATCGTCATCGGCTTCAATCCGCTATCGCTCTGGGGGCTGAAACGCAAACTGGATCGCA
ATGGCGAGTATCCCTGGAACGGGACTTACCTTTCGATCAATCGTCTGAAAGACTGGCTGAAACTGCTTGGCTTCGAAGTC
GACCGCGGTAGCCTTGGATGCTATGTCCCCCCCGTCGACCAACTGAAATGGTTGCAGAACTGGCGTTTTATCGAAAACGC
CACTAACCGCTGGTGGAATTTCTCAGGTGGCGTCTATGTGCTGCGGGCCATCAAGCGCACGCACAGCATGCGCCTGATCA
CCCCAAAATGGAAAAAACAGGCAGTACGGGCCAAGGCACTGCGCCCGATTGCTCAAAAGGAACGTCATGACCGCTGA

Upstream 100 bases:

>100_bases
AGCACGCTTGCCCCGGGTCAGCAGCCAGATGTAATTATCCTTGAACGCGGGAATGAACGAAATTTCTAACATGCCGGAAC
TATCGAGGGATGCGCCCCGG

Downstream 100 bases:

>100_bases
GGAAACTGTTGAAATATTCACCGATGGCGCCTGCAAGGGTAACCCTGGCCCCGGTGGCTGGGGGGCCATCCTGCGCCTCG
GACCACACGAGAAGGAACTG

Product: generic methyl-transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MSIPGMDAWLASAPGRYVLDWEQRQLDGIVADIFGFNALQLGLPQGDFLRANRIPLRQQAGEYGQVDVLCNYTALPFASN
SIDLVVLPHILEFSDEPHQILREVERILIPEGQVIVIGFNPLSLWGLKRKLDRNGEYPWNGTYLSINRLKDWLKLLGFEV
DRGSLGCYVPPVDQLKWLQNWRFIENATNRWWNFSGGVYVLRAIKRTHSMRLITPKWKKQAVRAKALRPIAQKERHDR

Sequences:

>Translated_238_residues
MSIPGMDAWLASAPGRYVLDWEQRQLDGIVADIFGFNALQLGLPQGDFLRANRIPLRQQAGEYGQVDVLCNYTALPFASN
SIDLVVLPHILEFSDEPHQILREVERILIPEGQVIVIGFNPLSLWGLKRKLDRNGEYPWNGTYLSINRLKDWLKLLGFEV
DRGSLGCYVPPVDQLKWLQNWRFIENATNRWWNFSGGVYVLRAIKRTHSMRLITPKWKKQAVRAKALRPIAQKERHDR
>Mature_237_residues
SIPGMDAWLASAPGRYVLDWEQRQLDGIVADIFGFNALQLGLPQGDFLRANRIPLRQQAGEYGQVDVLCNYTALPFASNS
IDLVVLPHILEFSDEPHQILREVERILIPEGQVIVIGFNPLSLWGLKRKLDRNGEYPWNGTYLSINRLKDWLKLLGFEVD
RGSLGCYVPPVDQLKWLQNWRFIENATNRWWNFSGGVYVLRAIKRTHSMRLITPKWKKQAVRAKALRPIAQKERHDR

Specific function: Unknown

COG id: COG0500

COG function: function code QR; SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081700, Length=146, Percent_Identity=32.8767123287671, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013216 [H]

Pfam domain/function: PF08241 Methyltransf_11 [H]

EC number: NA

Molecular weight: Translated: 27502; Mature: 27371

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIPGMDAWLASAPGRYVLDWEQRQLDGIVADIFGFNALQLGLPQGDFLRANRIPLRQQA
CCCCCCCHHHHCCCCCEEECHHHHHHHHHHHHHHCCCEEEECCCCCCCEECCCCCHHHHC
GEYGQVDVLCNYTALPFASNSIDLVVLPHILEFSDEPHQILREVERILIPEGQVIVIGFN
CCCCCEEEEECCEECCCCCCCEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCEEEEECC
PLSLWGLKRKLDRNGEYPWNGTYLSINRLKDWLKLLGFEVDRGSLGCYVPPVDQLKWLQN
HHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHC
WRFIENATNRWWNFSGGVYVLRAIKRTHSMRLITPKWKKQAVRAKALRPIAQKERHDR
CHHHHHCCCCCCCCCCCHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SIPGMDAWLASAPGRYVLDWEQRQLDGIVADIFGFNALQLGLPQGDFLRANRIPLRQQA
CCCCCCHHHHCCCCCEEECHHHHHHHHHHHHHHCCCEEEECCCCCCCEECCCCCHHHHC
GEYGQVDVLCNYTALPFASNSIDLVVLPHILEFSDEPHQILREVERILIPEGQVIVIGFN
CCCCCEEEEECCEECCCCCCCEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCEEEEECC
PLSLWGLKRKLDRNGEYPWNGTYLSINRLKDWLKLLGFEVDRGSLGCYVPPVDQLKWLQN
HHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHC
WRFIENATNRWWNFSGGVYVLRAIKRTHSMRLITPKWKKQAVRAKALRPIAQKERHDR
CHHHHHCCCCCCCCCCCHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]