Click here to switch to the map view.

The map label for this gene is ydhO [H]

Identifier: 71906840

GI number: 71906840

Start: 1305148

End: 1305657

Strand: Reverse

Name: ydhO [H]

Synonym: Daro_1201

Alternate gene names: 71906840

Gene position: 1305657-1305148 (Counterclockwise)

Preceding gene: 71906849

Following gene: 71906839

Centisome position: 29.01

GC content: 57.45

Gene sequence:

>510_bases
ATGCAAAAAGTAACGGCCTCCCTTCTGCTTGCCTTCTCGCTGCTCGTCGGCGGGATCAGCGCGTCCTCCGCGGCTGAACT
GGCACGCAAACCGGAAGAGCAGCAGTCGTTTCTGGAACGTTACACCAACGTCGCTCAGGATGTAATCCTGCAAGGTCTGA
AGCTGGTCGGCGTCCGCTACCGATTTGGTGGCAACGACGAAAGCAGCGGTCTTGACTGCAGTGGTTTTGTTCGTCTGGTC
TTCAAGGACAGCATCGGCGCCTCCTTGCCGCGTACCGCTCGCGAAATGAGTGAAGTTGGCCAGCAGATCGACTCCAGCCA
ACTCAAACCGGGCGATCTGGTCTTCTTTAATACGATGCGCCGCACCTTCTCGCACGTCGGCATTTATCTCGGCGACAACC
ACTTCCTGCACGCGCCACGCACTGGCGCTGAAGTTCGCGTCGAGAACATGGAAAGCAGTTACTGGATGCAGCGCTACAAC
GGCGCGCGACGAATTCTCGAAGTCAACTGA

Upstream 100 bases:

>100_bases
GAGAAATTGTATTCATAATTACGAATGATGAACATAGTTGCAGTACCCGAATTTTTCAGCTTCTTTACAGTCAGCGGTTT
TTCAAATACATTTCGCGGCT

Downstream 100 bases:

>100_bases
ACCAAGCGGCTAAACAGCCGCTTTTTTTACGTCCAATCAAGGCAATCACTCTCGTCCACAACAGCCGTGTCAGCAAGTAA
ACTGGGGCGATTCTCAAAGA

Product: NLP/P60

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MQKVTASLLLAFSLLVGGISASSAAELARKPEEQQSFLERYTNVAQDVILQGLKLVGVRYRFGGNDESSGLDCSGFVRLV
FKDSIGASLPRTAREMSEVGQQIDSSQLKPGDLVFFNTMRRTFSHVGIYLGDNHFLHAPRTGAEVRVENMESSYWMQRYN
GARRILEVN

Sequences:

>Translated_169_residues
MQKVTASLLLAFSLLVGGISASSAAELARKPEEQQSFLERYTNVAQDVILQGLKLVGVRYRFGGNDESSGLDCSGFVRLV
FKDSIGASLPRTAREMSEVGQQIDSSQLKPGDLVFFNTMRRTFSHVGIYLGDNHFLHAPRTGAEVRVENMESSYWMQRYN
GARRILEVN
>Mature_169_residues
MQKVTASLLLAFSLLVGGISASSAAELARKPEEQQSFLERYTNVAQDVILQGLKLVGVRYRFGGNDESSGLDCSGFVRLV
FKDSIGASLPRTAREMSEVGQQIDSSQLKPGDLVFFNTMRRTFSHVGIYLGDNHFLHAPRTGAEVRVENMESSYWMQRYN
GARRILEVN

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=138, Percent_Identity=39.1304347826087, Blast_Score=115, Evalue=1e-27,
Organism=Escherichia coli, GI1788501, Length=129, Percent_Identity=43.4108527131783, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1786421, Length=139, Percent_Identity=35.2517985611511, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1788001, Length=110, Percent_Identity=40.9090909090909, Blast_Score=86, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 18809; Mature: 18809

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKVTASLLLAFSLLVGGISASSAAELARKPEEQQSFLERYTNVAQDVILQGLKLVGVRY
CCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
RFGGNDESSGLDCSGFVRLVFKDSIGASLPRTAREMSEVGQQIDSSQLKPGDLVFFNTMR
EECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEHHHHHH
RTFSHVGIYLGDNHFLHAPRTGAEVRVENMESSYWMQRYNGARRILEVN
HHHHHCCEEECCCEEEECCCCCCEEEEECCHHHHHHHHHCCCCEEEECC
>Mature Secondary Structure
MQKVTASLLLAFSLLVGGISASSAAELARKPEEQQSFLERYTNVAQDVILQGLKLVGVRY
CCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
RFGGNDESSGLDCSGFVRLVFKDSIGASLPRTAREMSEVGQQIDSSQLKPGDLVFFNTMR
EECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEHHHHHH
RTFSHVGIYLGDNHFLHAPRTGAEVRVENMESSYWMQRYNGARRILEVN
HHHHHCCEEECCCEEEECCCCCCEEEEECCHHHHHHHHHCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]