Click here to switch to the map view.

The map label for this gene is intD [H]

Identifier: 71906676

GI number: 71906676

Start: 1137870

End: 1138886

Strand: Reverse

Name: intD [H]

Synonym: Daro_1037

Alternate gene names: 71906676

Gene position: 1138886-1137870 (Counterclockwise)

Preceding gene: 71906677

Following gene: 71906663

Centisome position: 25.3

GC content: 56.44

Gene sequence:

>1017_bases
ATGTCACTCTTCAAACGCAAAGACTCGTCCTGCTGGTGGGTCAAAATCATCATCGACGGACGAAAGGTACAACGCAGTAC
TGGGACTGACGACAAAATCAAAGCCCAGGAATTCCACGACCGGCTAAAAGCCCAGATGTGGGAGCAGAATCGCCTCGGAG
TAAAAGCCAGGCGATCCTGGAAGGAAGCGGTAGTTCGTTGGCTGGAGGAAACTTCGGAGAAGGCCACGCACAACGAGGAC
AAGCGCAAGCTGATCTGGCTTGATACCTACCTCGGGAAACTGATGCTCGATGAGATCACCCTGGATGTGATCGACAGTGT
CAGGGCGGCCAAGCTCAAGGAAGCGGCCAAGGCAACGACGAACCGTTATTTGGCACTGATGCGCTCGATTCTCCTTCGCG
CCAGAGATGAATGGGAATGGATCGACAAGGTGCCGAAGGTAAGGCTCTTTAAAGAATCTGCAAGCCGTGAACGTTCTCTG
ACCCGAGAGCAGGCGGGCAAGCTGTTGGAGGAGTTGCCGCAACACCAGCGCGATGTGGTTCTGTTCGCCCTGGCGACCGG
CCTTCGCCAGAGCAATGTCCTCCAGCTCGAATGGTCACAGATCAACCTGGAACAACGCCATGCGTGGATTCATGCCTGGC
AGTCGAAGAACCGGCGACCCATTTCCATTCCGTTGAATGAGGCAGCGTATAGCGTCCTCATCCGGCAGAAGGGGAAACAT
GAGAGTCGAGTCTTTACGTTTCGGGGCAAGCCATTGGAGTCGGCCAATACCCGTGCCTGGCGTAAAGCCTTGCTACGGTC
GGGGATCGATAACTTCCGTTGGCATGATCTGAGGCATACCTGGGCAACGTGGCAGCGACAGGCTGGAACACCGACGCATG
AGCTACAACGCTTGGGCGGTTGGCGGACAGGGGCGATGGTGGAGCGCTATGCTCACCTGGCTCCCGATCATCTGGCGGAA
GCGGCCTCCCGGCTAAATTCGGTAATCCCTGGCTACGTTTCAGCTACGGTGACCTAG

Upstream 100 bases:

>100_bases
TCGGGAAGTGTTGGGTCTTTCTGGAAATTGACCTGGTGGACTACGTCCGGTCACAATACCGGCGGCGAGCGTTGCAGGGT
GCGCATGAAAGGAACATCAC

Downstream 100 bases:

>100_bases
AAAAGCAAAAAGCCCACTCCGAAGAATGGGCCTTTTGGCAGCATCGACGACGATGAAGAATCGTCGCCAACGCGATGTCT
GGAGCGGCAGAAGAGTCTCG

Product: Phage integrase

Products: NA

Alternate protein names: Prophage QSR' integrase [H]

Number of amino acids: Translated: 338; Mature: 337

Protein sequence:

>338_residues
MSLFKRKDSSCWWVKIIIDGRKVQRSTGTDDKIKAQEFHDRLKAQMWEQNRLGVKARRSWKEAVVRWLEETSEKATHNED
KRKLIWLDTYLGKLMLDEITLDVIDSVRAAKLKEAAKATTNRYLALMRSILLRARDEWEWIDKVPKVRLFKESASRERSL
TREQAGKLLEELPQHQRDVVLFALATGLRQSNVLQLEWSQINLEQRHAWIHAWQSKNRRPISIPLNEAAYSVLIRQKGKH
ESRVFTFRGKPLESANTRAWRKALLRSGIDNFRWHDLRHTWATWQRQAGTPTHELQRLGGWRTGAMVERYAHLAPDHLAE
AASRLNSVIPGYVSATVT

Sequences:

>Translated_338_residues
MSLFKRKDSSCWWVKIIIDGRKVQRSTGTDDKIKAQEFHDRLKAQMWEQNRLGVKARRSWKEAVVRWLEETSEKATHNED
KRKLIWLDTYLGKLMLDEITLDVIDSVRAAKLKEAAKATTNRYLALMRSILLRARDEWEWIDKVPKVRLFKESASRERSL
TREQAGKLLEELPQHQRDVVLFALATGLRQSNVLQLEWSQINLEQRHAWIHAWQSKNRRPISIPLNEAAYSVLIRQKGKH
ESRVFTFRGKPLESANTRAWRKALLRSGIDNFRWHDLRHTWATWQRQAGTPTHELQRLGGWRTGAMVERYAHLAPDHLAE
AASRLNSVIPGYVSATVT
>Mature_337_residues
SLFKRKDSSCWWVKIIIDGRKVQRSTGTDDKIKAQEFHDRLKAQMWEQNRLGVKARRSWKEAVVRWLEETSEKATHNEDK
RKLIWLDTYLGKLMLDEITLDVIDSVRAAKLKEAAKATTNRYLALMRSILLRARDEWEWIDKVPKVRLFKESASRERSLT
REQAGKLLEELPQHQRDVVLFALATGLRQSNVLQLEWSQINLEQRHAWIHAWQSKNRRPISIPLNEAAYSVLIRQKGKHE
SRVFTFRGKPLESANTRAWRKALLRSGIDNFRWHDLRHTWATWQRQAGTPTHELQRLGGWRTGAMVERYAHLAPDHLAEA
ASRLNSVIPGYVSATVT

Specific function: Integrase from the cryptic lambdoic prophage DLP12. Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=375, Percent_Identity=37.0666666666667, Blast_Score=229, Evalue=2e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 39539; Mature: 39408

Theoretical pI: Translated: 10.89; Mature: 10.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLFKRKDSSCWWVKIIIDGRKVQRSTGTDDKIKAQEFHDRLKAQMWEQNRLGVKARRSW
CCCCCCCCCCEEEEEEEEECCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
KEAVVRWLEETSEKATHNEDKRKLIWLDTYLGKLMLDEITLDVIDSVRAAKLKEAAKATT
HHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NRYLALMRSILLRARDEWEWIDKVPKVRLFKESASRERSLTREQAGKLLEELPQHQRDVV
HHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
LFALATGLRQSNVLQLEWSQINLEQRHAWIHAWQSKNRRPISIPLNEAAYSVLIRQKGKH
HHHHHHCCCCCCEEEEEHHHCCHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHCCCC
ESRVFTFRGKPLESANTRAWRKALLRSGIDNFRWHDLRHTWATWQRQAGTPTHELQRLGG
CCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCC
WRTGAMVERYAHLAPDHLAEAASRLNSVIPGYVSATVT
CCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHEEECC
>Mature Secondary Structure 
SLFKRKDSSCWWVKIIIDGRKVQRSTGTDDKIKAQEFHDRLKAQMWEQNRLGVKARRSW
CCCCCCCCCEEEEEEEEECCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
KEAVVRWLEETSEKATHNEDKRKLIWLDTYLGKLMLDEITLDVIDSVRAAKLKEAAKATT
HHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NRYLALMRSILLRARDEWEWIDKVPKVRLFKESASRERSLTREQAGKLLEELPQHQRDVV
HHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
LFALATGLRQSNVLQLEWSQINLEQRHAWIHAWQSKNRRPISIPLNEAAYSVLIRQKGKH
HHHHHHCCCCCCEEEEEHHHCCHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHCCCC
ESRVFTFRGKPLESANTRAWRKALLRSGIDNFRWHDLRHTWATWQRQAGTPTHELQRLGG
CCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCC
WRTGAMVERYAHLAPDHLAEAASRLNSVIPGYVSATVT
CCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2553674; 2183007; 9278503 [H]