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The map label for this gene is ypjD [H]

Identifier: 71906281

GI number: 71906281

Start: 704191

End: 705030

Strand: Reverse

Name: ypjD [H]

Synonym: Daro_0641

Alternate gene names: 71906281

Gene position: 705030-704191 (Counterclockwise)

Preceding gene: 71906283

Following gene: 71906280

Centisome position: 15.66

GC content: 58.69

Gene sequence:

>840_bases
ATGGTCGATATTGTAATTCAGCTTCTGCCGCACATTCTCGCTGCCCTGATTTACGGAGCCCTCGGCTTCCACTTCTGGAA
CACCCGCTGGCGTGAAAGCGAAAATCAGTGCGTTGCCTGCCCAATGCAAACCTGGGAGCGTCTACTTATTGCCGGCGCTC
TCACCATCCACGCCGCCGGGCTCTACGATGCGCTGTTCGCCGAAGCCGGCATGCGCTTCTCGTTCAGCTTTGCGTTATCG
CTGATGATGTGGCTGGCCGTACTAATCTACTGGCTGGAAAGTTTCATGGCACGCATGGAGGGCATGCAACCCATGGTTCT
CCCCTTGGCGGCTGGCTGCACCGTGCTGCCGGTGATCTTTCCGAACGTTCATCTGGTTGCGCATGCCAGTGCCATCGGGT
TCAAGCTGCACTTTCTTGCCGCCATGCTGGCCTACAGCCTGCTCACCCTGTCGGCCCTACACGCCATTTTCATGGGGTTC
ACCGAACGCTCGCTGCACAACCGCTCCCTGAAACGCAGCCTGGCCAGCCTGCCACCACTACTGATCATGGAATCACTGCT
CTTCAAGATGCTGCTGGTCGGTTTTGTCCTGCTTACCTTGACGGTTGGCAGCGGCGTCTTTTTCTCTGAGGCGCTGTTCG
GCAAGCCTCTGACCGTCGACCACAAAACACTGTTTGCCTTCGCCTCGTGGGGCATCTTTGCAACACTGCTGATTGGCCGC
CACGCCTGGGGCTGGCGCGGCAAGCGCGCGCTGCGCTGGACCCTTGCCGGTTTTGCTTTGCTGATCCTGGCCTATGTCGG
CAGCCGCTTCGTCGCCGAAGTCATTCTCGGTCGAGTATAA

Upstream 100 bases:

>100_bases
TCAGTCAGGCGTGCTTCGCCCTTCAGCGTCTTCATGACGCGGGCAAGGCGGTTGGTCAGGTTATCGAGCATGTCGTTTGG
GCTTCTAGTAGAATTCGAGA

Downstream 100 bases:

>100_bases
ACAAGACCAATGACCGATTTGCCGCTATCTGTACTACTGGGAGCGCTTTTTGTCCTCCTGATTCTTTCCGGCATATTTTC
GGGCTCCGAAACCGCGATGA

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MVDIVIQLLPHILAALIYGALGFHFWNTRWRESENQCVACPMQTWERLLIAGALTIHAAGLYDALFAEAGMRFSFSFALS
LMMWLAVLIYWLESFMARMEGMQPMVLPLAAGCTVLPVIFPNVHLVAHASAIGFKLHFLAAMLAYSLLTLSALHAIFMGF
TERSLHNRSLKRSLASLPPLLIMESLLFKMLLVGFVLLTLTVGSGVFFSEALFGKPLTVDHKTLFAFASWGIFATLLIGR
HAWGWRGKRALRWTLAGFALLILAYVGSRFVAEVILGRV

Sequences:

>Translated_279_residues
MVDIVIQLLPHILAALIYGALGFHFWNTRWRESENQCVACPMQTWERLLIAGALTIHAAGLYDALFAEAGMRFSFSFALS
LMMWLAVLIYWLESFMARMEGMQPMVLPLAAGCTVLPVIFPNVHLVAHASAIGFKLHFLAAMLAYSLLTLSALHAIFMGF
TERSLHNRSLKRSLASLPPLLIMESLLFKMLLVGFVLLTLTVGSGVFFSEALFGKPLTVDHKTLFAFASWGIFATLLIGR
HAWGWRGKRALRWTLAGFALLILAYVGSRFVAEVILGRV
>Mature_279_residues
MVDIVIQLLPHILAALIYGALGFHFWNTRWRESENQCVACPMQTWERLLIAGALTIHAAGLYDALFAEAGMRFSFSFALS
LMMWLAVLIYWLESFMARMEGMQPMVLPLAAGCTVLPVIFPNVHLVAHASAIGFKLHFLAAMLAYSLLTLSALHAIFMGF
TERSLHNRSLKRSLASLPPLLIMESLLFKMLLVGFVLLTLTVGSGVFFSEALFGKPLTVDHKTLFAFASWGIFATLLIGR
HAWGWRGKRALRWTLAGFALLILAYVGSRFVAEVILGRV

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693174, Length=172, Percent_Identity=31.3953488372093, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 31032; Mature: 31032

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDIVIQLLPHILAALIYGALGFHFWNTRWRESENQCVACPMQTWERLLIAGALTIHAAG
CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHH
LYDALFAEAGMRFSFSFALSLMMWLAVLIYWLESFMARMEGMQPMVLPLAAGCTVLPVIF
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHC
PNVHLVAHASAIGFKLHFLAAMLAYSLLTLSALHAIFMGFTERSLHNRSLKRSLASLPPL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
LIMESLLFKMLLVGFVLLTLTVGSGVFFSEALFGKPLTVDHKTLFAFASWGIFATLLIGR
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC
HAWGWRGKRALRWTLAGFALLILAYVGSRFVAEVILGRV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVDIVIQLLPHILAALIYGALGFHFWNTRWRESENQCVACPMQTWERLLIAGALTIHAAG
CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHH
LYDALFAEAGMRFSFSFALSLMMWLAVLIYWLESFMARMEGMQPMVLPLAAGCTVLPVIF
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHC
PNVHLVAHASAIGFKLHFLAAMLAYSLLTLSALHAIFMGFTERSLHNRSLKRSLASLPPL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
LIMESLLFKMLLVGFVLLTLTVGSGVFFSEALFGKPLTVDHKTLFAFASWGIFATLLIGR
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC
HAWGWRGKRALRWTLAGFALLILAYVGSRFVAEVILGRV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]