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The map label for this gene is tapC [H]

Identifier: 71906278

GI number: 71906278

Start: 699872

End: 701098

Strand: Reverse

Name: tapC [H]

Synonym: Daro_0638

Alternate gene names: 71906278

Gene position: 701098-699872 (Counterclockwise)

Preceding gene: 71906279

Following gene: 71906277

Centisome position: 15.58

GC content: 53.55

Gene sequence:

>1227_bases
ATGGCTACCGCCGCAAGACGTAAGGCCTCGGCAGTCAAGGAAAGCACCTTCCTCTGGGAAGGCAAGAACAAGGATGGCAA
GACCGTTCGCGGGGAGATGCGCGTCGCAAGCGAGTCGGTCGTCCAAACCACCCTGCGCCGGCAAGGGATCACCAATACAA
AGGTAAAAAAAATCCGCTTCAAAAGTGGCGGGAAAATTACCGACAAAGATATCTCGCTGTTCACTCGACAATTGGCGACC
ATGATGAAATCAGGGGTGCCCTTACTGCAGTCATTCGACATCGTTGGCCGCGGGCACTCGAATCCGGCAGTCGGAAAACT
GTTACTGGACATCAAGGCCGATGTTGAGACCGGGAGTTCACTATCCCAGGCCTTCCGCAAGTACCCACTGCAGTTCGACG
CGCTCTACTGCAACCTGGTTTCCGCTGGAGAACAAGCTGGTATCCTCGATACCCTGCTCGACCGATTGGCCAGCTACAAG
GAAAAGATCCTGGCAATCAAGAGCAAGATCAAGTCAGCACTGTTTTATCCTGTCGCTATTCTCGTAGTCGCCTTCATCAT
CACCGCGGTGATCATGATCTTTGTCATTCCTGCCTTCAAGGAAGTTTTCAAGGGCTTTGGCGCTGATCTCCCGGCTCCAA
CCCTGATCGTCATTGCCATTTCAGACTTTTTTGTCGCTTATTGGTGGGCCATTTTTGGGATCATCGGCGGAGGACTCTAT
GCCTTCCTCGAGAGTTGGAAGCGATCCGAGAAAGTACAGATGGCGATGGACCGCCTTCTTCTCCGCGTCCCCGTTTTCGG
TGACATCGTGCGGAAATCAGTGATCGCCCGGTGGACCAGAACATTATCCACGATGTTTGCGGCAGGTGTCCCGCTTGTCG
AATCTCTCGAATCCGTTGGTGGGGCAGCAGGCAATCATGTCTATAAAGTTGCCACCCGGCAGATCCAGAGTGAAGTTTCT
TCCGGCACCAACCTGACCACCGCAATGCAGAATGTGAACCTTTTCCCTAACATGGTCACGCAGATGGTTGCTATTGGCGA
AGAGTCTGGTGCACTGGATTCGATGCTCTCCAAGGTAGCCGACTTTTTCGAGGCAGAAGTTGACGATGCAGTCGAAGCGA
TGTCCAGCCTGATGGAACCAATCATCATGGTCGTGCTCGGCACCTTGATCGGCGGCATGGTCGTCGCCATGTACCTGCCC
ATCTTCAAACTGGGATCGGTGGTCTGA

Upstream 100 bases:

>100_bases
GAAAAACCTCCGCGAATCCGGACTATTAAAAGTCAAACAAGGTGTGACCTCGCTTGACGAGGTGCTCAGCACCACCAACG
CTTAACGAAAAGGAACTTGT

Downstream 100 bases:

>100_bases
TGCTTCCTGAAACGCAGGGCGGCCTGGCTGCCATAGCTGGGCTACTTGGTTTGTGCGTCGGTAGTTTCCTCAACGTCGTG
ATCCACCGACTACCCAAGAT

Product: type II secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 407

Protein sequence:

>408_residues
MATAARRKASAVKESTFLWEGKNKDGKTVRGEMRVASESVVQTTLRRQGITNTKVKKIRFKSGGKITDKDISLFTRQLAT
MMKSGVPLLQSFDIVGRGHSNPAVGKLLLDIKADVETGSSLSQAFRKYPLQFDALYCNLVSAGEQAGILDTLLDRLASYK
EKILAIKSKIKSALFYPVAILVVAFIITAVIMIFVIPAFKEVFKGFGADLPAPTLIVIAISDFFVAYWWAIFGIIGGGLY
AFLESWKRSEKVQMAMDRLLLRVPVFGDIVRKSVIARWTRTLSTMFAAGVPLVESLESVGGAAGNHVYKVATRQIQSEVS
SGTNLTTAMQNVNLFPNMVTQMVAIGEESGALDSMLSKVADFFEAEVDDAVEAMSSLMEPIIMVVLGTLIGGMVVAMYLP
IFKLGSVV

Sequences:

>Translated_408_residues
MATAARRKASAVKESTFLWEGKNKDGKTVRGEMRVASESVVQTTLRRQGITNTKVKKIRFKSGGKITDKDISLFTRQLAT
MMKSGVPLLQSFDIVGRGHSNPAVGKLLLDIKADVETGSSLSQAFRKYPLQFDALYCNLVSAGEQAGILDTLLDRLASYK
EKILAIKSKIKSALFYPVAILVVAFIITAVIMIFVIPAFKEVFKGFGADLPAPTLIVIAISDFFVAYWWAIFGIIGGGLY
AFLESWKRSEKVQMAMDRLLLRVPVFGDIVRKSVIARWTRTLSTMFAAGVPLVESLESVGGAAGNHVYKVATRQIQSEVS
SGTNLTTAMQNVNLFPNMVTQMVAIGEESGALDSMLSKVADFFEAEVDDAVEAMSSLMEPIIMVVLGTLIGGMVVAMYLP
IFKLGSVV
>Mature_407_residues
ATAARRKASAVKESTFLWEGKNKDGKTVRGEMRVASESVVQTTLRRQGITNTKVKKIRFKSGGKITDKDISLFTRQLATM
MKSGVPLLQSFDIVGRGHSNPAVGKLLLDIKADVETGSSLSQAFRKYPLQFDALYCNLVSAGEQAGILDTLLDRLASYKE
KILAIKSKIKSALFYPVAILVVAFIITAVIMIFVIPAFKEVFKGFGADLPAPTLIVIAISDFFVAYWWAIFGIIGGGLYA
FLESWKRSEKVQMAMDRLLLRVPVFGDIVRKSVIARWTRTLSTMFAAGVPLVESLESVGGAAGNHVYKVATRQIQSEVSS
GTNLTTAMQNVNLFPNMVTQMVAIGEESGALDSMLSKVADFFEAEVDDAVEAMSSLMEPIIMVVLGTLIGGMVVAMYLPI
FKLGSVV

Specific function: Involved in the translocation of the type IV pilin [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=402, Percent_Identity=27.363184079602, Blast_Score=180, Evalue=2e-46,
Organism=Escherichia coli, GI1786295, Length=392, Percent_Identity=29.3367346938776, Blast_Score=173, Evalue=2e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 44407; Mature: 44276

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATAARRKASAVKESTFLWEGKNKDGKTVRGEMRVASESVVQTTLRRQGITNTKVKKIRF
CCCHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEE
KSGGKITDKDISLFTRQLATMMKSGVPLLQSFDIVGRGHSNPAVGKLLLDIKADVETGSS
CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHH
LSQAFRKYPLQFDALYCNLVSAGEQAGILDTLLDRLASYKEKILAIKSKIKSALFYPVAI
HHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVVAFIITAVIMIFVIPAFKEVFKGFGADLPAPTLIVIAISDFFVAYWWAIFGIIGGGLY
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
AFLESWKRSEKVQMAMDRLLLRVPVFGDIVRKSVIARWTRTLSTMFAAGVPLVESLESVG
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
GAAGNHVYKVATRQIQSEVSSGTNLTTAMQNVNLFPNMVTQMVAIGEESGALDSMLSKVA
CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHH
DFFEAEVDDAVEAMSSLMEPIIMVVLGTLIGGMVVAMYLPIFKLGSVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ATAARRKASAVKESTFLWEGKNKDGKTVRGEMRVASESVVQTTLRRQGITNTKVKKIRF
CCHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEE
KSGGKITDKDISLFTRQLATMMKSGVPLLQSFDIVGRGHSNPAVGKLLLDIKADVETGSS
CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHH
LSQAFRKYPLQFDALYCNLVSAGEQAGILDTLLDRLASYKEKILAIKSKIKSALFYPVAI
HHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVVAFIITAVIMIFVIPAFKEVFKGFGADLPAPTLIVIAISDFFVAYWWAIFGIIGGGLY
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
AFLESWKRSEKVQMAMDRLLLRVPVFGDIVRKSVIARWTRTLSTMFAAGVPLVESLESVG
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
GAAGNHVYKVATRQIQSEVSSGTNLTTAMQNVNLFPNMVTQMVAIGEESGALDSMLSKVA
CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHH
DFFEAEVDDAVEAMSSLMEPIIMVVLGTLIGGMVVAMYLPIFKLGSVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8820654 [H]