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The map label for this gene is comF [H]

Identifier: 71906257

GI number: 71906257

Start: 683786

End: 684529

Strand: Reverse

Name: comF [H]

Synonym: Daro_0617

Alternate gene names: 71906257

Gene position: 684529-683786 (Counterclockwise)

Preceding gene: 71906260

Following gene: 71906256

Centisome position: 15.21

GC content: 60.89

Gene sequence:

>744_bases
ATGAATTATCACGGACGCTCCGGCTCAATGTCAATTTTACCCCACCCCGGCGGACTCAAGGGCCTCGCCAGAAAACTCGG
CAATGCACTATTACCCGGCAGTTGCCTGCTTTGTGGCGCGAACAGCCGGGACGAATTGCTCTGCCCGGAATGCAACGCGG
ACCTGCCCGGCCTCCCGCCCCAGCTTTGTCCGCTTTGTGCCGACCAGACCACGCACGGCGAACGCTGCGGCGCCTGCCTG
AAAGATGCCCCCTGTTTCGACCGCACCATCGCTCTTTTTCACTATGATTTCCCACTCGACCGGATCATTCACGCGCTGAA
ATACGGTCACCAACTGGCTGTGGCTCCCTGGTGCAGCCGACGCCTGGGCAGGCGGATAGCGGCAAATGAACTCGACTTGA
TCATTCCCCTCCCTCTGCATCCGCAACGCCTGATTGAGCGCGGTTTCAACCAGTCGGCTGAAATTGCACGAACGCTGGGC
AACGATCTGAACATTCCGGTCGACCACACCAACGTGTTGCGCACGCGCCCTACAGCACCCCAGGCTGATCTCCCGCACAA
GGAACGCAAGAAGAACGTGCGTGGCGCCTTCGAATGTCGCACCGATCTCAGCGGCCGGCGCCTGTTGCTGATCGACGATG
TCATGACGACCGGCGCCACCGTCAATGAATGCGCCCGCGTCCTGAAATTGCATGGCGCGGCATCGGTCACGGTCGCCGTG
ATTGCCCGTGCGCTCAGGCACTGA

Upstream 100 bases:

>100_bases
GACGGGGAAGCAGAGGAAACGGCGGCGAGGGAGCTAGCTTGCATGAGAGGCCTTGCGTAAGAAATACTATAAAAATCAGA
TGCGAAGCGCATCGGTAATT

Downstream 100 bases:

>100_bases
TTCCGTGTTTTAATCCGCCCCCTTTGATCGTTGGAAGCCAGTCGCGTGTTTGCCGTCGTTCTCTACCGCCCGGAAATTCC
GCCCAACACGGGCAACATCA

Product: phosphoribosyltransferase

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MNYHGRSGSMSILPHPGGLKGLARKLGNALLPGSCLLCGANSRDELLCPECNADLPGLPPQLCPLCADQTTHGERCGACL
KDAPCFDRTIALFHYDFPLDRIIHALKYGHQLAVAPWCSRRLGRRIAANELDLIIPLPLHPQRLIERGFNQSAEIARTLG
NDLNIPVDHTNVLRTRPTAPQADLPHKERKKNVRGAFECRTDLSGRRLLLIDDVMTTGATVNECARVLKLHGAASVTVAV
IARALRH

Sequences:

>Translated_247_residues
MNYHGRSGSMSILPHPGGLKGLARKLGNALLPGSCLLCGANSRDELLCPECNADLPGLPPQLCPLCADQTTHGERCGACL
KDAPCFDRTIALFHYDFPLDRIIHALKYGHQLAVAPWCSRRLGRRIAANELDLIIPLPLHPQRLIERGFNQSAEIARTLG
NDLNIPVDHTNVLRTRPTAPQADLPHKERKKNVRGAFECRTDLSGRRLLLIDDVMTTGATVNECARVLKLHGAASVTVAV
IARALRH
>Mature_247_residues
MNYHGRSGSMSILPHPGGLKGLARKLGNALLPGSCLLCGANSRDELLCPECNADLPGLPPQLCPLCADQTTHGERCGACL
KDAPCFDRTIALFHYDFPLDRIIHALKYGHQLAVAPWCSRRLGRRIAANELDLIIPLPLHPQRLIERGFNQSAEIARTLG
NDLNIPVDHTNVLRTRPTAPQADLPHKERKKNVRGAFECRTDLSGRRLLLIDDVMTTGATVNECARVLKLHGAASVTVAV
IARALRH

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=222, Percent_Identity=36.4864864864865, Blast_Score=109, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 27014; Mature: 27014

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS00103 PUR_PYR_PR_TRANSFER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
4.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYHGRSGSMSILPHPGGLKGLARKLGNALLPGSCLLCGANSRDELLCPECNADLPGLPP
CCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCEEEECCCCCCCEECCCCCCCCCCCCH
QLCPLCADQTTHGERCGACLKDAPCFDRTIALFHYDFPLDRIIHALKYGHQLAVAPWCSR
HHHHHHCCCCCCHHHHHHHHHCCCCCHHEEEEEEECCCHHHHHHHHHHCCEEEECHHHHH
RLGRRIAANELDLIIPLPLHPQRLIERGFNQSAEIARTLGNDLNIPVDHTNVLRTRPTAP
HHHHHHCCCCCCEEEECCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHEECCCCCC
QADLPHKERKKNVRGAFECRTDLSGRRLLLIDDVMTTGATVNECARVLKLHGAASVTVAV
CCCCCHHHHHHCCCCHHHCCCCCCCCEEEEEECHHHCCCCHHHHHHHHHHCCCHHHHHHH
IARALRH
HHHHHCC
>Mature Secondary Structure
MNYHGRSGSMSILPHPGGLKGLARKLGNALLPGSCLLCGANSRDELLCPECNADLPGLPP
CCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCEEEECCCCCCCEECCCCCCCCCCCCH
QLCPLCADQTTHGERCGACLKDAPCFDRTIALFHYDFPLDRIIHALKYGHQLAVAPWCSR
HHHHHHCCCCCCHHHHHHHHHCCCCCHHEEEEEEECCCHHHHHHHHHHCCEEEECHHHHH
RLGRRIAANELDLIIPLPLHPQRLIERGFNQSAEIARTLGNDLNIPVDHTNVLRTRPTAP
HHHHHHCCCCCCEEEECCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHEECCCCCC
QADLPHKERKKNVRGAFECRTDLSGRRLLLIDDVMTTGATVNECARVLKLHGAASVTVAV
CCCCCHHHHHHCCCCHHHCCCCCCCCEEEEEECHHHCCCCHHHHHHHHHHCCCHHHHHHH
IARALRH
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]