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The map label for this gene is yiaN [C]

Identifier: 71906240

GI number: 71906240

Start: 670347

End: 671810

Strand: Reverse

Name: yiaN [C]

Synonym: Daro_0600

Alternate gene names: 71906240

Gene position: 671810-670347 (Counterclockwise)

Preceding gene: 71906241

Following gene: 71906239

Centisome position: 14.93

GC content: 62.43

Gene sequence:

>1464_bases
ATGGAATGGGTCATCGCCAATATGGCGCCGCTGATGTTTGGCGCCCTCGTGCTATTCCTGCTCTTCGGCTACCCGGTTGC
CTTCGCCCTGGCGGCCAACGGCATCGTCTTCGGCCTACTTGGCATCGAACTCGGCCTGCTCACCCCGGCGCTGTTCCAGG
CCCTGCCCGAGCGCATCTTCGGCATCATGGCCAACGACACGCTGCTCGCCATCCCCTTCTTTACCTTCATGGGGCTGATA
TTAGAGCGATCCGGCATGGCGGAAGACCTGCTCGACACCATCGGCCAATTGTTCGGCCCGATGCGTGGCGGTCTGGCCTA
CGCCGTGATCTTCGTCGGCGCCCTGCTTGCTGCGACGACCGGCGTGGTTGCCGCCTCAGTCATCTCGATGGGTCTGATTT
CGCTGCCGATCATGCTGCGCTACGGCTACGACAAGCGACTGGCATCCGGCGTCATCGCCGCTTCCGGCACGCTGGCCCAG
ATTATCCCGCCGTCACTGGTACTGATCATCATGGCCGACCAGCTCGGCCGTTCGGTCGGCGACATGTACGAAGGTGCCAT
GATCCCCGGCCTGGTGCTGACCAGCATGTACGTCGGCTACGTGGTCCTTCTCAGCATCATCAAGCCCAAGACCTGCCCGG
CCCTGCCGCTGGAAGCCCGCTCCCTGCGCGGCATCAAGCTGATGCTCCGCGTACTGACCACGCTGGTGCCGCCACTGGTC
CTGATCTTCCTGGTTCTCGGCACCATCTTCCTCGGCATTGCAACGCCGACCGAAGGCGGCGCCATGGGTGCAGCCGGCGC
GCTGATCCTGGCCCTGGCCCGCAAGCGGATTACCTTCAGCCTGCTCAAGCAGGCCATGGAAACCACCGGCAAGCTGTCGT
CCTTCGTGGTCTTCATCCTGGTCGGCTCGACGGTGTTCGGCCTGGTCTTCCGCGGCGTCAATGGCGACCTGTGGGTCGAA
CACCTGCTGCTCGGGCTGCCCGGCGGCCAGGTCGGCTTCCTGATCGTGGTCAATATCCTGGTCTTCGTGCTCGCCTTCTT
CCTCGACTTCTTCGAACTGTCCTTCATCATCGTGCCCCTGCTGGCACCGGTCGCGGACAAGCTGGGTATCGATCTGGTCT
GGTTCGGCGTACTGCTCGCGGTCAACATGCAGACCTCGTTCATGCACCCGCCGTTCGGCTTCGCTTTGTTCTACCTGCGC
TCGGTCGCCCCGAGTTCGGTCAAGACAACGGACATCTACTGGGGAGCCATCCCGTTCGTCTGCATCCAGATCATCATGGT
CGCGATCATCATCATCTTCCCGAACATCGTCAGCTACGGCGACCCGGCGGAGAAGGCCCGGATCGAGCAACAGGGCGATG
TCGACCTCAGTACGATGATGCAGGAGGGCGAAGGGGCCAAGGCGCCGACCGAAGACTCGGCGGCCGATCTGCTGAAGAAT
CTGCAAAGCAACGAAAACAAGTAA

Upstream 100 bases:

>100_bases
CCGGAATGATCGACGACCCGAACGACAAGAAAAAAGGCCCGACGGCCGAAGAAGAACTGGCCGCCGCCATCGCTGCTGCC
AAAGCCAAGGAGGCCAAATA

Downstream 100 bases:

>100_bases
CACGCCATCGACATGAAACCAATCTCAACGGGGCTTCGGCCCCGTTTTTTTTCGCCATCAATTGCGACTATGATTGCCAT
CGGCATTGCTCATTGGTACC

Product: TRAP dicarboxylate transporter, DctM subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 487; Mature: 487

Protein sequence:

>487_residues
MEWVIANMAPLMFGALVLFLLFGYPVAFALAANGIVFGLLGIELGLLTPALFQALPERIFGIMANDTLLAIPFFTFMGLI
LERSGMAEDLLDTIGQLFGPMRGGLAYAVIFVGALLAATTGVVAASVISMGLISLPIMLRYGYDKRLASGVIAASGTLAQ
IIPPSLVLIIMADQLGRSVGDMYEGAMIPGLVLTSMYVGYVVLLSIIKPKTCPALPLEARSLRGIKLMLRVLTTLVPPLV
LIFLVLGTIFLGIATPTEGGAMGAAGALILALARKRITFSLLKQAMETTGKLSSFVVFILVGSTVFGLVFRGVNGDLWVE
HLLLGLPGGQVGFLIVVNILVFVLAFFLDFFELSFIIVPLLAPVADKLGIDLVWFGVLLAVNMQTSFMHPPFGFALFYLR
SVAPSSVKTTDIYWGAIPFVCIQIIMVAIIIIFPNIVSYGDPAEKARIEQQGDVDLSTMMQEGEGAKAPTEDSAADLLKN
LQSNENK

Sequences:

>Translated_487_residues
MEWVIANMAPLMFGALVLFLLFGYPVAFALAANGIVFGLLGIELGLLTPALFQALPERIFGIMANDTLLAIPFFTFMGLI
LERSGMAEDLLDTIGQLFGPMRGGLAYAVIFVGALLAATTGVVAASVISMGLISLPIMLRYGYDKRLASGVIAASGTLAQ
IIPPSLVLIIMADQLGRSVGDMYEGAMIPGLVLTSMYVGYVVLLSIIKPKTCPALPLEARSLRGIKLMLRVLTTLVPPLV
LIFLVLGTIFLGIATPTEGGAMGAAGALILALARKRITFSLLKQAMETTGKLSSFVVFILVGSTVFGLVFRGVNGDLWVE
HLLLGLPGGQVGFLIVVNILVFVLAFFLDFFELSFIIVPLLAPVADKLGIDLVWFGVLLAVNMQTSFMHPPFGFALFYLR
SVAPSSVKTTDIYWGAIPFVCIQIIMVAIIIIFPNIVSYGDPAEKARIEQQGDVDLSTMMQEGEGAKAPTEDSAADLLKN
LQSNENK
>Mature_487_residues
MEWVIANMAPLMFGALVLFLLFGYPVAFALAANGIVFGLLGIELGLLTPALFQALPERIFGIMANDTLLAIPFFTFMGLI
LERSGMAEDLLDTIGQLFGPMRGGLAYAVIFVGALLAATTGVVAASVISMGLISLPIMLRYGYDKRLASGVIAASGTLAQ
IIPPSLVLIIMADQLGRSVGDMYEGAMIPGLVLTSMYVGYVVLLSIIKPKTCPALPLEARSLRGIKLMLRVLTTLVPPLV
LIFLVLGTIFLGIATPTEGGAMGAAGALILALARKRITFSLLKQAMETTGKLSSFVVFILVGSTVFGLVFRGVNGDLWVE
HLLLGLPGGQVGFLIVVNILVFVLAFFLDFFELSFIIVPLLAPVADKLGIDLVWFGVLLAVNMQTSFMHPPFGFALFYLR
SVAPSSVKTTDIYWGAIPFVCIQIIMVAIIIIFPNIVSYGDPAEKARIEQQGDVDLSTMMQEGEGAKAPTEDSAADLLKN
LQSNENK

Specific function: Unknown

COG id: COG4664

COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TRAP transporter large permease family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=375, Percent_Identity=26.4, Blast_Score=96, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 52059; Mature: 52059

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEWVIANMAPLMFGALVLFLLFGYPVAFALAANGIVFGLLGIELGLLTPALFQALPERIF
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIMANDTLLAIPFFTFMGLILERSGMAEDLLDTIGQLFGPMRGGLAYAVIFVGALLAATT
HHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVVAASVISMGLISLPIMLRYGYDKRLASGVIAASGTLAQIIPPSLVLIIMADQLGRSVG
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHCHHHCCCCHHHHCCHHHHHHHHHHHHHHHHH
DMYEGAMIPGLVLTSMYVGYVVLLSIIKPKTCPALPLEARSLRGIKLMLRVLTTLVPPLV
HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LIFLVLGTIFLGIATPTEGGAMGAAGALILALARKRITFSLLKQAMETTGKLSSFVVFIL
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGSTVFGLVFRGVNGDLWVEHLLLGLPGGQVGFLIVVNILVFVLAFFLDFFELSFIIVPL
HHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAPVADKLGIDLVWFGVLLAVNMQTSFMHPPFGFALFYLRSVAPSSVKTTDIYWGAIPFV
HHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEECCEEHHHHHHH
CIQIIMVAIIIIFPNIVSYGDPAEKARIEQQGDVDLSTMMQEGEGAKAPTEDSAADLLKN
HHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHH
LQSNENK
HHCCCCC
>Mature Secondary Structure
MEWVIANMAPLMFGALVLFLLFGYPVAFALAANGIVFGLLGIELGLLTPALFQALPERIF
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIMANDTLLAIPFFTFMGLILERSGMAEDLLDTIGQLFGPMRGGLAYAVIFVGALLAATT
HHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVVAASVISMGLISLPIMLRYGYDKRLASGVIAASGTLAQIIPPSLVLIIMADQLGRSVG
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHCHHHCCCCHHHHCCHHHHHHHHHHHHHHHHH
DMYEGAMIPGLVLTSMYVGYVVLLSIIKPKTCPALPLEARSLRGIKLMLRVLTTLVPPLV
HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LIFLVLGTIFLGIATPTEGGAMGAAGALILALARKRITFSLLKQAMETTGKLSSFVVFIL
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGSTVFGLVFRGVNGDLWVEHLLLGLPGGQVGFLIVVNILVFVLAFFLDFFELSFIIVPL
HHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAPVADKLGIDLVWFGVLLAVNMQTSFMHPPFGFALFYLRSVAPSSVKTTDIYWGAIPFV
HHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEECCEEHHHHHHH
CIQIIMVAIIIIFPNIVSYGDPAEKARIEQQGDVDLSTMMQEGEGAKAPTEDSAADLLKN
HHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHH
LQSNENK
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]