| Definition | Dechloromonas aromatica RCB, complete genome. |
|---|---|
| Accession | NC_007298 |
| Length | 4,501,104 |
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The map label for this gene is uvrA [H]
Identifier: 71906113
GI number: 71906113
Start: 531202
End: 534027
Strand: Reverse
Name: uvrA [H]
Synonym: Daro_0473
Alternate gene names: 71906113
Gene position: 534027-531202 (Counterclockwise)
Preceding gene: 71906115
Following gene: 71906112
Centisome position: 11.86
GC content: 62.42
Gene sequence:
>2826_bases ATGGAAACCATCCGCATCCGCGGTGCGCGCACCCACAATTTAAAGAACATCAACCTCGACCTGCCGCGTGATCAGTTGAT CGTGATCACCGGACTATCCGGCTCCGGCAAGTCCTCCCTGGCCTTCGACACCTTGTACGCCGAGGGACAGCGCCGTTATG TCGAATCGCTGTCGGCCTATGCCCGGCAGTTCCTGCAGTTGATGGAGAAACCGGATGTCGATCTGATCGAAGGCCTGAGC CCGGCCATTTCCATCGAACAGAAGGCGACCTCGCACAACCCACGGTCGACGGTCGGCACCGTGACTGAAATTCACGACTA CCTGCGCCTGCTCTTCGCCCGCGCCGGCACGCCGTACTGCCCGGACCACAACCAGCCGCTGGAAGCGCAAACCGTGTCGC AGATGGTCGACACCGTGCTCGCCCTGCCGGCCGAAACCAAGCTGATGATCCTCGCCCCGGTCGTTGCCAACCGCAAGGGC GAACAAGTCGACCTGTTCACCGAATTGCGCGCCCAAGGCTTTGCCCGCGTCCGTGTCGATGGCACGGTCTATGAGATCGA TGCCGTACCCAAGCTGGCCAAGACCCAGAAACACACCGTCGACGTCGTCGTCGACCGCCTGAAGGTGCGTGACGACATGC GCCAGCGCCTGGCCGAATCCTTTGAAACAGCGCTGCGCCATGCCGAGGGCCGAGCCATCGCGCTGGAAATGGACAGCAAC GTCGAGCATCTTTTTTCGGCCAAGTTCGCCTGCCCGGTCTGTTCCTACGCCTTGCAGGAACTGGAACCGCGCCTGTTCTC GTTCAACAACCCGATGGGCGCCTGCCCGAAGTGCGACGGCCTGGGCGTCATCCAGTTCTTCGACCCGAAACGGGTGGTCA CCCAACCAACCGCTTCGCTGGCCGGCGGCGCGATTCGCGGCTGGGACAAGAAGAACCAGTTCTACTTCCAGATCATCGAA TCGCTGGCCGACCATTACGGTTTTTCGGTCGATACGCCATGGAACGACTTGCCGGAAAAGGTCCAGCAACTGGTCCTTTA CGGCTCAGGCAACGTGGCCATCAACTTCCGCTACCTGAACGAGAAGGGCACCCGCTTCGACCGCAGCCACAGCTTCGAAG GCATCATCCCGAACCTGGAACGGCGCTACCGCGGCAGCGAATCGAACGCCGTGCGCGAGGAGTTGGCGAAGTACGTCAGC AGTTCGGCCTGCCCGAGCTGCGCCGGCACCCGGCTGCGCATTGAGGCACGGCATGTTCGGGTCGGCGACAAGACCCTGTA TGAAATCAGCCGGATGCCGCTTGGCGAGGCGCGCAATTATTTCAACTGCCTGACGCTGACCGGCGCCAAGGCACAGGTGG CCGACAAGATCCTCAAGGAAATCACCGCCCGCCTGAGCTTCCTGATCAACGTCGGCCTCGATTACCTGTGCCTCGAGCGC TCGGCCGAAACGCTGTCCGGCGGCGAGGCGCAGCGCATCCGGCTGGCCTCGCAGATCGGCTCGGGCCTGACCGGCGTCAT GTATGTACTCGACGAACCCTCAATCGGTCTGCACCAGCGCGACAATGATCGTCTGCTCGAAACATTGAAGAACCTGCGCG ACATGGGCAACACGGTATTGGTCGTCGAGCATGACGAGGATGCCATCCGCGCCGCCGACTACGTCGTCGACATCGGCCCT GGCGCCGGGGTGCATGGCGGTTTCATCGTTGCCCAGGGGACGCCGGCCGAGGTTCAGGCCAATCCGCTATCGATGACTGG CGATTACCTGTCCGGCCGCAAATCCATTTCTGCCCCGAAAACGCGCCGGGTGCCGGATCCGAACAAGCAGCTCAAGGTCG TCGGCGCCTACGGCAACAATCTGAAGGACGTCACGCTGGAAATCCCCGGCGGCCTGCTTACCTGCATCACCGGTGTTTCC GGCTCGGGCAAATCGACGCTGATCAACGACACGCTGTACGCGGCGGCCGCCAGACACCTCTACGGCTCGACCACGGAACC CGCACCACACAAGGAAATCATCGGTCTGGAGCTGTTCGACAAGGTAATCAACGTCGACCAGGCGCCGATTGGCCGCACGC CGCGCTCCAACCCGGCGACCTACACCGGCCTGCTGACGCCGATCCGCGAGCTGTTCGCCCAGGTACCCGAATCCCGCGTC CGCGGCTACGGGCCGGGACGCTTCAGCTTCAACGTCAAGGGCGGACGCTGCGAGGCCTGCCAGGGCGACGGCATGATCAA GGTGGAGATGCACTTCCTGCCCGATATCTACGTCCCCTGCGACGTCTGCCACGGCAAGCGCTACAACCGCGAAACGCTGG AAGTCCAGTACAAGGGCAAGAACATTTACGACATTCTCGGCATGACCGTCGAGCAGGCGCGAGAGTTCTTCGACCCCGTC CCCAACATCGCGCGCAAGCTGCAAACACTGGTCGATGTCGGCCTCAGCTACATCACCCTGGGCCAGAGCGCGACCACGCT GTCCGGCGGCGAAGCCCAGCGCGTCAAGCTCGCCCTTGAACTGTCCAAGCGCGATACCGGCCGCACGCTGTATATCCTCG ACGAGCCGACCACCGGCCTGCATTTCCAGGACATCGAAATGCTGCTCAGCGTCCTGCAGCGTCTGGCCAACAACGGCAAC ACCATCGTCGTCATCGAACACAACCTCGACGTCATCAAGACCGCCGACTGGATCGTCGATCTCGGGCCGGAGGGCGGCGA TGGCGGGGGCCGCATCCTGGTCAGCGGCACGCCTGAAGAAGTGGCCAAATGCAAGGCCAGCCATACCGGGCGCTTCCTGA AACCTTTGCTTGAGAAAAAGAAATGA
Upstream 100 bases:
>100_bases ACGACGAACAAGCAATGCTGTATAAAAAAACAGCCGTCCGTGCATATCGCCGGGGTTTTGCGTATAGTTCATTCCTCTCC CCAACCGTTCCCGAGCAGCG
Downstream 100 bases:
>100_bases CTGACGCCGCCGCCTTCAAGGGCAAGAAGGGCCTGACCCGTTTATGGAATGCCCTCGGCTACTCGCGCGACGGACTGGCT GCCGCCTGGAAAAACGAAGC
Product: excinuclease ABC subunit A
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 941; Mature: 941
Protein sequence:
>941_residues METIRIRGARTHNLKNINLDLPRDQLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQLMEKPDVDLIEGLS PAISIEQKATSHNPRSTVGTVTEIHDYLRLLFARAGTPYCPDHNQPLEAQTVSQMVDTVLALPAETKLMILAPVVANRKG EQVDLFTELRAQGFARVRVDGTVYEIDAVPKLAKTQKHTVDVVVDRLKVRDDMRQRLAESFETALRHAEGRAIALEMDSN VEHLFSAKFACPVCSYALQELEPRLFSFNNPMGACPKCDGLGVIQFFDPKRVVTQPTASLAGGAIRGWDKKNQFYFQIIE SLADHYGFSVDTPWNDLPEKVQQLVLYGSGNVAINFRYLNEKGTRFDRSHSFEGIIPNLERRYRGSESNAVREELAKYVS SSACPSCAGTRLRIEARHVRVGDKTLYEISRMPLGEARNYFNCLTLTGAKAQVADKILKEITARLSFLINVGLDYLCLER SAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLLETLKNLRDMGNTVLVVEHDEDAIRAADYVVDIGP GAGVHGGFIVAQGTPAEVQANPLSMTGDYLSGRKSISAPKTRRVPDPNKQLKVVGAYGNNLKDVTLEIPGGLLTCITGVS GSGKSTLINDTLYAAAARHLYGSTTEPAPHKEIIGLELFDKVINVDQAPIGRTPRSNPATYTGLLTPIRELFAQVPESRV RGYGPGRFSFNVKGGRCEACQGDGMIKVEMHFLPDIYVPCDVCHGKRYNRETLEVQYKGKNIYDILGMTVEQAREFFDPV PNIARKLQTLVDVGLSYITLGQSATTLSGGEAQRVKLALELSKRDTGRTLYILDEPTTGLHFQDIEMLLSVLQRLANNGN TIVVIEHNLDVIKTADWIVDLGPEGGDGGGRILVSGTPEEVAKCKASHTGRFLKPLLEKKK
Sequences:
>Translated_941_residues METIRIRGARTHNLKNINLDLPRDQLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQLMEKPDVDLIEGLS PAISIEQKATSHNPRSTVGTVTEIHDYLRLLFARAGTPYCPDHNQPLEAQTVSQMVDTVLALPAETKLMILAPVVANRKG EQVDLFTELRAQGFARVRVDGTVYEIDAVPKLAKTQKHTVDVVVDRLKVRDDMRQRLAESFETALRHAEGRAIALEMDSN VEHLFSAKFACPVCSYALQELEPRLFSFNNPMGACPKCDGLGVIQFFDPKRVVTQPTASLAGGAIRGWDKKNQFYFQIIE SLADHYGFSVDTPWNDLPEKVQQLVLYGSGNVAINFRYLNEKGTRFDRSHSFEGIIPNLERRYRGSESNAVREELAKYVS SSACPSCAGTRLRIEARHVRVGDKTLYEISRMPLGEARNYFNCLTLTGAKAQVADKILKEITARLSFLINVGLDYLCLER SAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLLETLKNLRDMGNTVLVVEHDEDAIRAADYVVDIGP GAGVHGGFIVAQGTPAEVQANPLSMTGDYLSGRKSISAPKTRRVPDPNKQLKVVGAYGNNLKDVTLEIPGGLLTCITGVS GSGKSTLINDTLYAAAARHLYGSTTEPAPHKEIIGLELFDKVINVDQAPIGRTPRSNPATYTGLLTPIRELFAQVPESRV RGYGPGRFSFNVKGGRCEACQGDGMIKVEMHFLPDIYVPCDVCHGKRYNRETLEVQYKGKNIYDILGMTVEQAREFFDPV PNIARKLQTLVDVGLSYITLGQSATTLSGGEAQRVKLALELSKRDTGRTLYILDEPTTGLHFQDIEMLLSVLQRLANNGN TIVVIEHNLDVIKTADWIVDLGPEGGDGGGRILVSGTPEEVAKCKASHTGRFLKPLLEKKK >Mature_941_residues METIRIRGARTHNLKNINLDLPRDQLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQLMEKPDVDLIEGLS PAISIEQKATSHNPRSTVGTVTEIHDYLRLLFARAGTPYCPDHNQPLEAQTVSQMVDTVLALPAETKLMILAPVVANRKG EQVDLFTELRAQGFARVRVDGTVYEIDAVPKLAKTQKHTVDVVVDRLKVRDDMRQRLAESFETALRHAEGRAIALEMDSN VEHLFSAKFACPVCSYALQELEPRLFSFNNPMGACPKCDGLGVIQFFDPKRVVTQPTASLAGGAIRGWDKKNQFYFQIIE SLADHYGFSVDTPWNDLPEKVQQLVLYGSGNVAINFRYLNEKGTRFDRSHSFEGIIPNLERRYRGSESNAVREELAKYVS SSACPSCAGTRLRIEARHVRVGDKTLYEISRMPLGEARNYFNCLTLTGAKAQVADKILKEITARLSFLINVGLDYLCLER SAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLLETLKNLRDMGNTVLVVEHDEDAIRAADYVVDIGP GAGVHGGFIVAQGTPAEVQANPLSMTGDYLSGRKSISAPKTRRVPDPNKQLKVVGAYGNNLKDVTLEIPGGLLTCITGVS GSGKSTLINDTLYAAAARHLYGSTTEPAPHKEIIGLELFDKVINVDQAPIGRTPRSNPATYTGLLTPIRELFAQVPESRV RGYGPGRFSFNVKGGRCEACQGDGMIKVEMHFLPDIYVPCDVCHGKRYNRETLEVQYKGKNIYDILGMTVEQAREFFDPV PNIARKLQTLVDVGLSYITLGQSATTLSGGEAQRVKLALELSKRDTGRTLYILDEPTTGLHFQDIEMLLSVLQRLANNGN TIVVIEHNLDVIKTADWIVDLGPEGGDGGGRILVSGTPEEVAKCKASHTGRFLKPLLEKKK
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=940, Percent_Identity=71.063829787234, Blast_Score=1368, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 103646; Mature: 103646
Theoretical pI: Translated: 7.27; Mature: 7.27
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure METIRIRGARTHNLKNINLDLPRDQLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY CCEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHH ARQFLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLFARAGTPYC HHHHHHHHHCCCCHHHHCCCCCEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC PDHNQPLEAQTVSQMVDTVLALPAETKLMILAPVVANRKGEQVDLFTELRAQGFARVRVD CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEHHHCCCCCEEHHHHHHHHCCCEEEEEC GTVYEIDAVPKLAKTQKHTVDVVVDRLKVRDDMRQRLAESFETALRHAEGRAIALEMDSN CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC VEHLFSAKFACPVCSYALQELEPRLFSFNNPMGACPKCDGLGVIQFFDPKRVVTQPTASL HHHHHHHHHHHHHHHHHHHHHCCHHEECCCCCCCCCCCCCCEEEEEECCCHHHCCCCHHH AGGAIRGWDKKNQFYFQIIESLADHYGFSVDTPWNDLPEKVQQLVLYGSGNVAINFRYLN CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHEEEECCCCEEEEEEEEC EKGTRFDRSHSFEGIIPNLERRYRGSESNAVREELAKYVSSSACPSCAGTRLRIEARHVR CCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEE VGDKTLYEISRMPLGEARNYFNCLTLTGAKAQVADKILKEITARLSFLINVGLDYLCLER CCCHHHHHHHCCCCHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHEEHHC SAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLLETLKNLRDMGNTVL CHHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEE VVEHDEDAIRAADYVVDIGPGAGVHGGFIVAQGTPAEVQANPLSMTGDYLSGRKSISAPK EEECCCCHHHHEEEEEECCCCCCCCCCEEEECCCCCCEECCCCEECCHHHCCCCCCCCCC TRRVPDPNKQLKVVGAYGNNLKDVTLEIPGGLLTCITGVSGSGKSTLINDTLYAAAARHL CCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEHHCCCCCCCCCEEEHHHHHHHHHHHH YGSTTEPAPHKEIIGLELFDKVINVDQAPIGRTPRSNPATYTGLLTPIRELFAQVPESRV CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHH RGYGPGRFSFNVKGGRCEACQGDGMIKVEMHFLPDIYVPCDVCHGKRYNRETLEVQYKGK CCCCCCEEEEEECCCEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCC NIYDILGMTVEQAREFFDPVPNIARKLQTLVDVGLSYITLGQSATTLSGGEAQRVKLALE CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEEEEE LSKRDTGRTLYILDEPTTGLHFQDIEMLLSVLQRLANNGNTIVVIEHNLDVIKTADWIVD ECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECCEEEE LGPEGGDGGGRILVSGTPEEVAKCKASHTGRFLKPLLEKKK ECCCCCCCCCEEEEECCHHHHHHHHHHCCCHHHHHHHHCCC >Mature Secondary Structure METIRIRGARTHNLKNINLDLPRDQLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY CCEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHH ARQFLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLFARAGTPYC HHHHHHHHHCCCCHHHHCCCCCEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC PDHNQPLEAQTVSQMVDTVLALPAETKLMILAPVVANRKGEQVDLFTELRAQGFARVRVD CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEHHHCCCCCEEHHHHHHHHCCCEEEEEC GTVYEIDAVPKLAKTQKHTVDVVVDRLKVRDDMRQRLAESFETALRHAEGRAIALEMDSN CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC VEHLFSAKFACPVCSYALQELEPRLFSFNNPMGACPKCDGLGVIQFFDPKRVVTQPTASL HHHHHHHHHHHHHHHHHHHHHCCHHEECCCCCCCCCCCCCCEEEEEECCCHHHCCCCHHH AGGAIRGWDKKNQFYFQIIESLADHYGFSVDTPWNDLPEKVQQLVLYGSGNVAINFRYLN CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHEEEECCCCEEEEEEEEC EKGTRFDRSHSFEGIIPNLERRYRGSESNAVREELAKYVSSSACPSCAGTRLRIEARHVR CCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEE VGDKTLYEISRMPLGEARNYFNCLTLTGAKAQVADKILKEITARLSFLINVGLDYLCLER CCCHHHHHHHCCCCHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHEEHHC SAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLLETLKNLRDMGNTVL CHHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEE VVEHDEDAIRAADYVVDIGPGAGVHGGFIVAQGTPAEVQANPLSMTGDYLSGRKSISAPK EEECCCCHHHHEEEEEECCCCCCCCCCEEEECCCCCCEECCCCEECCHHHCCCCCCCCCC TRRVPDPNKQLKVVGAYGNNLKDVTLEIPGGLLTCITGVSGSGKSTLINDTLYAAAARHL CCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEHHCCCCCCCCCEEEHHHHHHHHHHHH YGSTTEPAPHKEIIGLELFDKVINVDQAPIGRTPRSNPATYTGLLTPIRELFAQVPESRV CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHH RGYGPGRFSFNVKGGRCEACQGDGMIKVEMHFLPDIYVPCDVCHGKRYNRETLEVQYKGK CCCCCCEEEEEECCCEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCC NIYDILGMTVEQAREFFDPVPNIARKLQTLVDVGLSYITLGQSATTLSGGEAQRVKLALE CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEEEEE LSKRDTGRTLYILDEPTTGLHFQDIEMLLSVLQRLANNGNTIVVIEHNLDVIKTADWIVD ECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECCEEEE LGPEGGDGGGRILVSGTPEEVAKCKASHTGRFLKPLLEKKK ECCCCCCCCCEEEEECCHHHHHHHHHHCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9197406 [H]