| Definition | Dechloromonas aromatica RCB, complete genome. |
|---|---|
| Accession | NC_007298 |
| Length | 4,501,104 |
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The map label for this gene is dac [H]
Identifier: 71906063
GI number: 71906063
Start: 464432
End: 465871
Strand: Reverse
Name: dac [H]
Synonym: Daro_0423
Alternate gene names: 71906063
Gene position: 465871-464432 (Counterclockwise)
Preceding gene: 71906075
Following gene: 71906062
Centisome position: 10.35
GC content: 63.26
Gene sequence:
>1440_bases ATGTTCATCAAGAGACTCGCCCCCCTGATCCTGGCCGGGATTTCCCTGGCTGCGCTGGCCGACGGCCTGCCCCCCAGCGT ACTTGGCGCGCTGAAGGCGGCGCAAATTCCCGCAAAAAATGTCGCAGTCGTCATCCAGGCGGTCGATAGCGGATCGCCAC TGGTCGCCCACAACGCAAGCCAGGCGATGAACCCGGCGTCGGTGATGAAACTGGTCACCACCTATGCCGCCCTTGATCTG CTTGGCCCGGCCTACACCTGGAAAACCACGGTGTGGACTGAAAGCGCGCCGGTTGATGGCATTTTGAGCGGCAATCTGTA TATCAAGGGCAGCGGTGACCCGCGCTTCGCCATCGAACACCTGTGGTCCCTACTCCGCCAGTTGCAGGTCCGTGGCATCC GGCAGATTGCCGGCGATGTCGTGCTGGACCGCACGGCCTTCAACGTACCGAGCATCGACCCCGGCGCCTTCGATGACAAG CCAATGCGCCCTTACAACGTCGGCCCGGATGGTCTGCTGCTCAATTTCCGATCCCTGCGCTTCACGCTAGTGCCGGACAA CGGGAAGCCGCGCGTGCTGATGGAAACGCCGAGTGAAGGCCTGCGCGTCGACAACCAGTTACGCGCCGGCAACGGCGACT GCGGCAGCAACTGGAAGGACTTGATCAATGTTCGCCTGATTCCGGAAAACAGCGGCAACCGGCTGGAATTCACCGGCACT TATTCGGCACTATGCGGCGAGAAACCCCTGAACCTGTCGCCGCTGCCGGCTGACGCCCAGGCCGACGGATTGATCCGCGC CCTGTGGAAGGAACTCGGCGGCAACCTGAATGGCCAGGTTCGCGGCGGCACCGTACCGATAGGCGCCAAGCTGCTGGCTC AGCACGAGTCGGCCCCGTTGGCCGACGCGGTGCGCGACATCAACAAGTTCAGCAACAACGTGATGGCGAGGCAGGTTTTC CTCACTTTAGGCAATGATTCAGCACCAGCCACGGCCGAACGCTCGAAGCAACGAATCAGCGACTGGCTGGCCGCCCGCAA CCTGCGTTTCGGCGAACTGGTGCTCGACAACGGTTCCGGCCTGTCACGCGTCGAACGGATCAGTGCCGACAGCCTGAACC GCCTGTTGCTCGACGCCTGGAAGAATCCGGTGATGCCGGAGTTCGTGTCCAGCATGCCCATCGTCGGCATCGACGGCACG ATGAAGAAGCGCCTGAATAGCTCCGAGGCGACCGGCCGCGCCCATATCAAGACCGGCACGCTGGATGGCGTCAAGGCGGC ATCGGGCTACGCGCTGGATGCGCTGGGGCGCCGCTACGCCTTCACCTTCCTGATCAACCACCCGAAGGCCCAGGCTGGCA GCGCGGCCATCGACGCCCTGCTCGTCTGGGTGGCCCAGCGCCGGGTTGGCGAGAAAACACCGGTGCTGGAAAATGAGTGA
Upstream 100 bases:
>100_bases ACTCGGACAGCACGCCGGGTTTTATCAAGATAAGGCCCACCCTCGGAATTACCCCAGTGAGTGGTAGGCTAACACCTTCG AATTCCCCACCCTAATCCGG
Downstream 100 bases:
>100_bases GCGCTCGCCCTTTGTCGCCGATTTCCTGAACGAAAGCGGCCTGAACCGCCAGTTCGTCTTCGACCTGAGCGCTCTACCCG CTGACATCGCCGACAAGTTG
Product: D-alanyl-D-alanine carboxypeptidase PBP3
Products: NA
Alternate protein names: DD-carboxypeptidase; DD-peptidase; Penicillin-binding protein; PBP [H]
Number of amino acids: Translated: 479; Mature: 479
Protein sequence:
>479_residues MFIKRLAPLILAGISLAALADGLPPSVLGALKAAQIPAKNVAVVIQAVDSGSPLVAHNASQAMNPASVMKLVTTYAALDL LGPAYTWKTTVWTESAPVDGILSGNLYIKGSGDPRFAIEHLWSLLRQLQVRGIRQIAGDVVLDRTAFNVPSIDPGAFDDK PMRPYNVGPDGLLLNFRSLRFTLVPDNGKPRVLMETPSEGLRVDNQLRAGNGDCGSNWKDLINVRLIPENSGNRLEFTGT YSALCGEKPLNLSPLPADAQADGLIRALWKELGGNLNGQVRGGTVPIGAKLLAQHESAPLADAVRDINKFSNNVMARQVF LTLGNDSAPATAERSKQRISDWLAARNLRFGELVLDNGSGLSRVERISADSLNRLLLDAWKNPVMPEFVSSMPIVGIDGT MKKRLNSSEATGRAHIKTGTLDGVKAASGYALDALGRRYAFTFLINHPKAQAGSAAIDALLVWVAQRRVGEKTPVLENE
Sequences:
>Translated_479_residues MFIKRLAPLILAGISLAALADGLPPSVLGALKAAQIPAKNVAVVIQAVDSGSPLVAHNASQAMNPASVMKLVTTYAALDL LGPAYTWKTTVWTESAPVDGILSGNLYIKGSGDPRFAIEHLWSLLRQLQVRGIRQIAGDVVLDRTAFNVPSIDPGAFDDK PMRPYNVGPDGLLLNFRSLRFTLVPDNGKPRVLMETPSEGLRVDNQLRAGNGDCGSNWKDLINVRLIPENSGNRLEFTGT YSALCGEKPLNLSPLPADAQADGLIRALWKELGGNLNGQVRGGTVPIGAKLLAQHESAPLADAVRDINKFSNNVMARQVF LTLGNDSAPATAERSKQRISDWLAARNLRFGELVLDNGSGLSRVERISADSLNRLLLDAWKNPVMPEFVSSMPIVGIDGT MKKRLNSSEATGRAHIKTGTLDGVKAASGYALDALGRRYAFTFLINHPKAQAGSAAIDALLVWVAQRRVGEKTPVLENE >Mature_479_residues MFIKRLAPLILAGISLAALADGLPPSVLGALKAAQIPAKNVAVVIQAVDSGSPLVAHNASQAMNPASVMKLVTTYAALDL LGPAYTWKTTVWTESAPVDGILSGNLYIKGSGDPRFAIEHLWSLLRQLQVRGIRQIAGDVVLDRTAFNVPSIDPGAFDDK PMRPYNVGPDGLLLNFRSLRFTLVPDNGKPRVLMETPSEGLRVDNQLRAGNGDCGSNWKDLINVRLIPENSGNRLEFTGT YSALCGEKPLNLSPLPADAQADGLIRALWKELGGNLNGQVRGGTVPIGAKLLAQHESAPLADAVRDINKFSNNVMARQVF LTLGNDSAPATAERSKQRISDWLAARNLRFGELVLDNGSGLSRVERISADSLNRLLLDAWKNPVMPEFVSSMPIVGIDGT MKKRLNSSEATGRAHIKTGTLDGVKAASGYALDALGRRYAFTFLINHPKAQAGSAAIDALLVWVAQRRVGEKTPVLENE
Specific function: Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors [H]
COG id: COG2027
COG function: function code M; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S13 family [H]
Homologues:
Organism=Escherichia coli, GI1789573, Length=416, Percent_Identity=25.7211538461538, Blast_Score=123, Evalue=3e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR000667 [H]
Pfam domain/function: PF02113 Peptidase_S13 [H]
EC number: =3.4.16.4 [H]
Molecular weight: Translated: 51383; Mature: 51383
Theoretical pI: Translated: 9.78; Mature: 9.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFIKRLAPLILAGISLAALADGLPPSVLGALKAAQIPAKNVAVVIQAVDSGSPLVAHNAS CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEECHH QAMNPASVMKLVTTYAALDLLGPAYTWKTTVWTESAPVDGILSGNLYIKGSGDPRFAIEH HHCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCEEEECCEEEECCCCCHHHHHH LWSLLRQLQVRGIRQIAGDVVLDRTAFNVPSIDPGAFDDKPMRPYNVGPDGLLLNFRSLR HHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE FTLVPDNGKPRVLMETPSEGLRVDNQLRAGNGDCGSNWKDLINVRLIPENSGNRLEFTGT EEEECCCCCCEEEEECCCCCCCCCCEECCCCCCCCCCHHHEEEEEEEECCCCCEEEEEEC YSALCGEKPLNLSPLPADAQADGLIRALWKELGGNLNGQVRGGTVPIGAKLLAQHESAPL HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHCCCCCH ADAVRDINKFSNNVMARQVFLTLGNDSAPATAERSKQRISDWLAARNLRFGELVLDNGSG HHHHHHHHHHHHHHEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCC LSRVERISADSLNRLLLDAWKNPVMPEFVSSMPIVGIDGTMKKRLNSSEATGRAHIKTGT HHHHHHHCHHHHHHHHHHHHCCCCCHHHHHCCCEEECCHHHHHHCCCCCCCCEEEEEECC LDGVKAASGYALDALGRRYAFTFLINHPKAQAGSAAIDALLVWVAQRRVGEKTPVLENE CCCCCCCCCCCHHHHCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MFIKRLAPLILAGISLAALADGLPPSVLGALKAAQIPAKNVAVVIQAVDSGSPLVAHNAS CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEECHH QAMNPASVMKLVTTYAALDLLGPAYTWKTTVWTESAPVDGILSGNLYIKGSGDPRFAIEH HHCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCEEEECCEEEECCCCCHHHHHH LWSLLRQLQVRGIRQIAGDVVLDRTAFNVPSIDPGAFDDKPMRPYNVGPDGLLLNFRSLR HHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE FTLVPDNGKPRVLMETPSEGLRVDNQLRAGNGDCGSNWKDLINVRLIPENSGNRLEFTGT EEEECCCCCCEEEEECCCCCCCCCCEECCCCCCCCCCHHHEEEEEEEECCCCCEEEEEEC YSALCGEKPLNLSPLPADAQADGLIRALWKELGGNLNGQVRGGTVPIGAKLLAQHESAPL HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHCCCCCH ADAVRDINKFSNNVMARQVFLTLGNDSAPATAERSKQRISDWLAARNLRFGELVLDNGSG HHHHHHHHHHHHHHEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCC LSRVERISADSLNRLLLDAWKNPVMPEFVSSMPIVGIDGTMKKRLNSSEATGRAHIKTGT HHHHHHHCHHHHHHHHHHHHCCCCCHHHHHCCCEEECCHHHHHHCCCCCCCCEEEEEECC LDGVKAASGYALDALGRRYAFTFLINHPKAQAGSAAIDALLVWVAQRRVGEKTPVLENE CCCCCCCCCCCHHHHCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1554361; 7305936 [H]