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The map label for this gene is yfdE [H]

Identifier: 71905899

GI number: 71905899

Start: 299646

End: 300824

Strand: Reverse

Name: yfdE [H]

Synonym: Daro_0257

Alternate gene names: 71905899

Gene position: 300824-299646 (Counterclockwise)

Preceding gene: 71905901

Following gene: 71905890

Centisome position: 6.68

GC content: 62.85

Gene sequence:

>1179_bases
ATGCAAAACGCCCCAGAAACGAAAGCACGTGGCCCATTGGCCGGTATCAAGGTCATCGAATTCGCCGGTATCGGCCCCGG
GCCTTTCTGCGGCATGCTGCTCGCCGACATGGGCGCCGAAGTCACCTTGCTCGAACGAGCCGGTGGCACCTTTGCCTCGC
AACTGTTTGGCGGTGGGCGCAAGGCCGTGGCCAATCGCGGCAAAAAATCGCTGTGCATCGACCTCAAGCACCCGGAAGCC
AAAAACCTGGTTTTCAAGCTGATTGCCGAGGCCGATGTGCTGATCGAGGGGTTCCGGCCCGGTGTCATGGAACGCCTTGG
CTATGGCCCTAAGGTTTGTCTGAGCCTCAATCCGCGGCTGATCTATGGCCGCATGACCGGCTGGGGCCAAACCGGCCCGC
TGGCTCCGCGTGCCGGTCACGATGCCAACTACGCCGCGATTGCCGGCGTGCTCGATACCGGCCGCCGCCATGGCGGCGCC
CCCTGGGCCCCACCCACCCTGGTCGGCGACATGGGCGGTGGCGGCCTGATGCTCGCCTGGGGCATCGCCTGCGCGCTGCT
TGAGGCTCAACGCAGCGGCAAAGGCCAGGTCATCGATGCTGCGATGTGCGAAGGCGCTGCCGTTCTCGCCCACGGACTGT
TCAATCTCGAAGCGCTGGGCGAATGGGAAGGCCACTGCGCCATCGATTCGAGCGCGCCCTTCTACGACGTCTATGAATGC
GCCGATGGCCTGTGGATCAGCGTTTGCCCACTTGAACCCCAGTTTTACGCGACCTTTGTCGAGCGCCTCGGACTGAGCGG
TGATCCCGACTTTACTGGCCAGCAATATGACAAGACACGCTGGCCACTCATGCAGCAGCGGCTGGTCGAAATTTTCAAAC
GGGAACCACGCAAGCACTGGGAAGCGCTGTTCGATGACACGGACGATTGCGTGTGGCCGGTGCTGAGCATGAAGGAAGCC
CCGGCTCACCCGCACAATCTGGACAGAGAGGCTTTTGTCGACGTCGCGGGGGTCAGGCAACCCGCCCCGGCCCCTCGCCT
TTCGCGCACACCGGGAGCAATTCAGGCCCCGCCGCCGCTATTGGGGGAACATAGCCGTGAAGTTTTGACTTCGTTAGGGC
TGTCCGACGTCGAAGTCGAACAGCTGGCGGCCAATGGCGTGGTCAGCGAGAAACGATAA

Upstream 100 bases:

>100_bases
TCTGGGCTTTTCCTGGAGACACCTGAGACTGGATAATAAGGGACATCCACTGGACTTAGCCGCCAACCGGCATCAACCCA
AACTCTCCTCCGGAAAATCA

Downstream 100 bases:

>100_bases
ACTCGAGTGCGAACAGGCTCACTGCTCGCAAACCCCGAGCAGATCGGCCTCCAGTTCGATTTCCATACCTTTTTCCAGCT
TCCGGTCGAGGAACATGCCG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MQNAPETKARGPLAGIKVIEFAGIGPGPFCGMLLADMGAEVTLLERAGGTFASQLFGGGRKAVANRGKKSLCIDLKHPEA
KNLVFKLIAEADVLIEGFRPGVMERLGYGPKVCLSLNPRLIYGRMTGWGQTGPLAPRAGHDANYAAIAGVLDTGRRHGGA
PWAPPTLVGDMGGGGLMLAWGIACALLEAQRSGKGQVIDAAMCEGAAVLAHGLFNLEALGEWEGHCAIDSSAPFYDVYEC
ADGLWISVCPLEPQFYATFVERLGLSGDPDFTGQQYDKTRWPLMQQRLVEIFKREPRKHWEALFDDTDDCVWPVLSMKEA
PAHPHNLDREAFVDVAGVRQPAPAPRLSRTPGAIQAPPPLLGEHSREVLTSLGLSDVEVEQLAANGVVSEKR

Sequences:

>Translated_392_residues
MQNAPETKARGPLAGIKVIEFAGIGPGPFCGMLLADMGAEVTLLERAGGTFASQLFGGGRKAVANRGKKSLCIDLKHPEA
KNLVFKLIAEADVLIEGFRPGVMERLGYGPKVCLSLNPRLIYGRMTGWGQTGPLAPRAGHDANYAAIAGVLDTGRRHGGA
PWAPPTLVGDMGGGGLMLAWGIACALLEAQRSGKGQVIDAAMCEGAAVLAHGLFNLEALGEWEGHCAIDSSAPFYDVYEC
ADGLWISVCPLEPQFYATFVERLGLSGDPDFTGQQYDKTRWPLMQQRLVEIFKREPRKHWEALFDDTDDCVWPVLSMKEA
PAHPHNLDREAFVDVAGVRQPAPAPRLSRTPGAIQAPPPLLGEHSREVLTSLGLSDVEVEQLAANGVVSEKR
>Mature_392_residues
MQNAPETKARGPLAGIKVIEFAGIGPGPFCGMLLADMGAEVTLLERAGGTFASQLFGGGRKAVANRGKKSLCIDLKHPEA
KNLVFKLIAEADVLIEGFRPGVMERLGYGPKVCLSLNPRLIYGRMTGWGQTGPLAPRAGHDANYAAIAGVLDTGRRHGGA
PWAPPTLVGDMGGGGLMLAWGIACALLEAQRSGKGQVIDAAMCEGAAVLAHGLFNLEALGEWEGHCAIDSSAPFYDVYEC
ADGLWISVCPLEPQFYATFVERLGLSGDPDFTGQQYDKTRWPLMQQRLVEIFKREPRKHWEALFDDTDDCVWPVLSMKEA
PAHPHNLDREAFVDVAGVRQPAPAPRLSRTPGAIQAPPPLLGEHSREVLTSLGLSDVEVEQLAANGVVSEKR

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=389, Percent_Identity=41.3881748071979, Blast_Score=301, Evalue=9e-82,
Organism=Homo sapiens, GI266456254, Length=389, Percent_Identity=41.3881748071979, Blast_Score=300, Evalue=1e-81,
Organism=Homo sapiens, GI266458393, Length=255, Percent_Identity=46.2745098039216, Blast_Score=225, Evalue=5e-59,
Organism=Homo sapiens, GI266458397, Length=252, Percent_Identity=46.031746031746, Blast_Score=223, Evalue=3e-58,
Organism=Homo sapiens, GI300863128, Length=403, Percent_Identity=30.0248138957816, Blast_Score=156, Evalue=3e-38,
Organism=Homo sapiens, GI300863124, Length=429, Percent_Identity=28.6713286713287, Blast_Score=149, Evalue=4e-36,
Organism=Homo sapiens, GI42822893, Length=137, Percent_Identity=45.985401459854, Blast_Score=128, Evalue=7e-30,
Organism=Homo sapiens, GI266458395, Length=137, Percent_Identity=45.985401459854, Blast_Score=128, Evalue=1e-29,
Organism=Homo sapiens, GI300863126, Length=398, Percent_Identity=27.1356783919598, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI13376042, Length=429, Percent_Identity=26.8065268065268, Blast_Score=114, Evalue=2e-25,
Organism=Escherichia coli, GI87082093, Length=359, Percent_Identity=29.5264623955432, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1788717, Length=419, Percent_Identity=27.6849642004773, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1786222, Length=398, Percent_Identity=24.1206030150754, Blast_Score=80, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI115535051, Length=346, Percent_Identity=34.971098265896, Blast_Score=201, Evalue=5e-52,
Organism=Caenorhabditis elegans, GI32564160, Length=346, Percent_Identity=32.3699421965318, Blast_Score=189, Evalue=3e-48,
Organism=Drosophila melanogaster, GI24585488, Length=382, Percent_Identity=44.2408376963351, Blast_Score=296, Evalue=2e-80,
Organism=Drosophila melanogaster, GI24648431, Length=411, Percent_Identity=29.683698296837, Blast_Score=139, Evalue=4e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42054; Mature: 42054

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNAPETKARGPLAGIKVIEFAGIGPGPFCGMLLADMGAEVTLLERAGGTFASQLFGGGR
CCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHCCCH
KAVANRGKKSLCIDLKHPEAKNLVFKLIAEADVLIEGFRPGVMERLGYGPKVCLSLNPRL
HHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEECCEE
IYGRMTGWGQTGPLAPRAGHDANYAAIAGVLDTGRRHGGAPWAPPTLVGDMGGGGLMLAW
EEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHH
GIACALLEAQRSGKGQVIDAAMCEGAAVLAHGLFNLEALGEWEGHCAIDSSAPFYDVYEC
HHHHHHHHHHHCCCCCEEEHHHHCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHH
ADGLWISVCPLEPQFYATFVERLGLSGDPDFTGQQYDKTRWPLMQQRLVEIFKREPRKHW
CCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHH
EALFDDTDDCVWPVLSMKEAPAHPHNLDREAFVDVAGVRQPAPAPRLSRTPGAIQAPPPL
HHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
LGEHSREVLTSLGLSDVEVEQLAANGVVSEKR
CCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MQNAPETKARGPLAGIKVIEFAGIGPGPFCGMLLADMGAEVTLLERAGGTFASQLFGGGR
CCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHCCCH
KAVANRGKKSLCIDLKHPEAKNLVFKLIAEADVLIEGFRPGVMERLGYGPKVCLSLNPRL
HHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEECCEE
IYGRMTGWGQTGPLAPRAGHDANYAAIAGVLDTGRRHGGAPWAPPTLVGDMGGGGLMLAW
EEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHH
GIACALLEAQRSGKGQVIDAAMCEGAAVLAHGLFNLEALGEWEGHCAIDSSAPFYDVYEC
HHHHHHHHHHHCCCCCEEEHHHHCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHH
ADGLWISVCPLEPQFYATFVERLGLSGDPDFTGQQYDKTRWPLMQQRLVEIFKREPRKHW
CCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHH
EALFDDTDDCVWPVLSMKEAPAHPHNLDREAFVDVAGVRQPAPAPRLSRTPGAIQAPPPL
HHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
LGEHSREVLTSLGLSDVEVEQLAANGVVSEKR
CCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]