| Definition | Dechloromonas aromatica RCB, complete genome. |
|---|---|
| Accession | NC_007298 |
| Length | 4,501,104 |
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The map label for this gene is polA [H]
Identifier: 71905805
GI number: 71905805
Start: 178647
End: 181367
Strand: Reverse
Name: polA [H]
Synonym: Daro_0163
Alternate gene names: 71905805
Gene position: 181367-178647 (Counterclockwise)
Preceding gene: 71905815
Following gene: 71905792
Centisome position: 4.03
GC content: 63.69
Gene sequence:
>2721_bases ATGCCTCTCTTGTTGTTAGTGGACGGTTCGTCCTATCTCTACCGCGCTTTCCATGCCCTGCCCGACCTGCGCAACAAGGC CGGCGAGCCGACGGGCGCCATCTACGGCGTTCTGAACATGCTACGTCGTCTCGAGAGCGACTACAAGGCAGAGTACAAGG CCGTCGTCTTCGACGCCAAGGGCAAGACTTTCCGTGACGACTGGTATCCCGAATACAAGGCGCATCGCCCGCCGATGCCC GACGACCTGGTCCAGCAGATCGAACCTCTGCATGCGGCGATCAAGGCGGCTGGGTGGCCGCTGCTGATGGTCGATGGCGT CGAAGCCGACGACGTGATCGGCACGCTGGCCACCAACGCCACTGCCGACGGGATCGAGACGCTGATATCCACCGGCGACA AGGATCTGACCCAACTGGTCAGCTCGCATGTCCGCTGGTACAACACGATGAGCAATGAACTGCTCGACGAAGCCGGCGTT GAAGCCAAGTTCGGCGTGCCGCCAGGCAAGATCGTCGATTATCTGGCGCTGGTCGGCGATACCGTCGACGGCGTACCGGG TGTCGCCAAATGCGGCCCGAAGACCGCTCTGAAATGGCTGGCGCAATATGGCTCGCTCGATGAAGTCGTCGCCCATGCCA ACGAGATCGGCGGCGTGGTCGGCCAGAACCTGCGCGATCACCTCGGTTTCCTGCCGCTCGGCAAGCGGCTGGTCACCGTG GCTTGTGACCTCAGCAACCTGCCGGCGCCGAGCACCTTGACCACCACCGCGCGAGACACGGCAACCTTGCGCGAACTCTA TACCCGCTACCAGTTCCGTACCTGGCTGGGCGAAATCGACGGGCCGGAAGCGGCGGCGGCCGTGCCGGCGCGCGAAGTAT CGGAGACACCCGCCGCAGCACCGACCGCTGCCATCGCAGTCCATTACGAAACCGTGTTGAGCTGGCCGCAATTTGATGCC TGGCTCGCGAAGATCGAAGCGGCGGAACTGACGGCGCTCGATACCGAAACGACCAGCCTCGACTCCTTCGCCGCCCGCAT CGTCGGCATCTCGCTGTCGGTCACGCCTGGCGAAGCCTGCTACATCCCGCTCGCTCACACCGCCCCCGGGGTCGCCGACC AGCTGCCACGCGAGGAAGTGCTGGCCAGACTGAAATCCTGGCTGGAGTCAGCCGCACACAAGAAGGTGCTGCAGAACGCC AAGTACGACCAGCACGTCTTCGCCAACCATGGCATCGCGCTGTCCGGCATCGCCCACGACACCATGCTGCAAAGCTACGT CATCGAGTCCGACAAGGGCCACGACCTCGGCCAGCTATGCACCCGCCACCTCGGGCTCGCCACTATCGCTTACGAAGACC TGTGCGGCAAGGGCGCCAAGCAGATCACCTTCGATCAGGTCGACATCGAACGCGCTGCCACTTACGCTGCCGAAGATTCC GACGTCACGCTGCGCGTGCACAACGTACTGCATCCGCAGTTCGCCAGCGAACCCGGGCTGTCACGCATCTACCACGAGAT CGAAATGCCGGCCCGTCAGGTCATCTGGCAGATCGAGCGCAACGGCATTCTGATCGACAGCGACGTTCTAAGCCGACAAA GTCACGAGATGGGCCAGAAGATCATGGCCCTCGAAGCGCAGGCCTACGAACTGGCCGGCCAGCCATTCAACCTCGCCTCA CCCAAGCAACTGGCCGACATCCTGTTCGAGAAGCAGGGCCTGCCGGTCAAGAAGAAAACCCCCTCCGGCGGCCCGTCGAC CGACGAGGAAGTGCTCTCCGAACTGGCCCTCGACTACCCGCTGCCCAAGCTGCTGCTCGAACACCGCAGCCTGTCCAAGC TGAAAGGGACCTACACCGACAAGCTGCCGCGCATGGTCAATCCGCAGACAGGAAGAGTGCATACTCACTTCTCCCAGGCA GCTGTTGTGACTGGCCGGCTCGCTTCCAGCGACCCCAATCTGCAGAACATCCCGGTACGCAGCGAGGAAGGCCGGAAGAT TCGTACGGCATTCATTGCCCCGGCGGGTAGCAGCATCGTCTCGGCCGACTATTCGCAGATCGAACTGCGCATCATGGCCC ATCTGTCGGGCGACGAACGCCTGCTCGACGCCTTCGCCCACGGCGAGGACGTGCACAAGGCCACAGCCGGCGAAATCTTC GGCGTCACGCCGCTTGAAGTCGGCCCCGACCAGCGCCGTGTCGCCAAGAGCATCAACTTCGGGCTGATCTACGGCATGAG CGCCTTCGGCCTGGCCCGCCAGCTCGGGCTGGAACGCAGCGCGGCGCAGACCTACATCGACCGCTACTTCGCCCGCTACC CCGGCGTGGCCCGTTACATGGAAGAAGCCCGCGAATCAGCCCGCCAGCACGGCTACGTCGAAACCGCCTTCGGCCGCCGC CTGTGGTTCCCGGATATCCGCTCGAGCAACGGCAACCGCCGCCAGGGCGCCGAGCGCGCCGCGATCAACGCGCCAATGCA GGGTACGGCCGCCGACCTGATCAAGCTGGCCATGATCGCCGTGCAAAACTGGCTGGAAAAATCAGCGCTGAAATCACGTC TCATCCTGCAGGTACACGACGAACTGCTGCTCGAAGTACCGGACGGCGAACTGATGGACGTCCGCACCCACCTGCCGCGC CTGATGGGACAAGTGGCCGAACTGAAGGTACCGCTGGTCGTCGAAGTCGGCGTCGGGCCGAACTGGGAAGCGGCGCACTA G
Upstream 100 bases:
>100_bases ATAATGCCGAAAATCCGCCACGACTCGCGGGCCGTCGTACTTTTCAGGATGGCCTCAGTCTCCACCCCTGTTACCAATTT ATCGCTTTCCGTCACTTCTC
Downstream 100 bases:
>100_bases TCGGACTAGTCGCCTTCCAGCGCCCGCACGGCGGCTTCCACCGCATCAACTGAGATATCGGCCACCGCAAAGGTCGAAGG CTGCAACAGCACATGCCGCG
Product: DNA polymerase A
Products: NA
Alternate protein names: POL I [H]
Number of amino acids: Translated: 906; Mature: 905
Protein sequence:
>906_residues MPLLLLVDGSSYLYRAFHALPDLRNKAGEPTGAIYGVLNMLRRLESDYKAEYKAVVFDAKGKTFRDDWYPEYKAHRPPMP DDLVQQIEPLHAAIKAAGWPLLMVDGVEADDVIGTLATNATADGIETLISTGDKDLTQLVSSHVRWYNTMSNELLDEAGV EAKFGVPPGKIVDYLALVGDTVDGVPGVAKCGPKTALKWLAQYGSLDEVVAHANEIGGVVGQNLRDHLGFLPLGKRLVTV ACDLSNLPAPSTLTTTARDTATLRELYTRYQFRTWLGEIDGPEAAAAVPAREVSETPAAAPTAAIAVHYETVLSWPQFDA WLAKIEAAELTALDTETTSLDSFAARIVGISLSVTPGEACYIPLAHTAPGVADQLPREEVLARLKSWLESAAHKKVLQNA KYDQHVFANHGIALSGIAHDTMLQSYVIESDKGHDLGQLCTRHLGLATIAYEDLCGKGAKQITFDQVDIERAATYAAEDS DVTLRVHNVLHPQFASEPGLSRIYHEIEMPARQVIWQIERNGILIDSDVLSRQSHEMGQKIMALEAQAYELAGQPFNLAS PKQLADILFEKQGLPVKKKTPSGGPSTDEEVLSELALDYPLPKLLLEHRSLSKLKGTYTDKLPRMVNPQTGRVHTHFSQA AVVTGRLASSDPNLQNIPVRSEEGRKIRTAFIAPAGSSIVSADYSQIELRIMAHLSGDERLLDAFAHGEDVHKATAGEIF GVTPLEVGPDQRRVAKSINFGLIYGMSAFGLARQLGLERSAAQTYIDRYFARYPGVARYMEEARESARQHGYVETAFGRR LWFPDIRSSNGNRRQGAERAAINAPMQGTAADLIKLAMIAVQNWLEKSALKSRLILQVHDELLLEVPDGELMDVRTHLPR LMGQVAELKVPLVVEVGVGPNWEAAH
Sequences:
>Translated_906_residues MPLLLLVDGSSYLYRAFHALPDLRNKAGEPTGAIYGVLNMLRRLESDYKAEYKAVVFDAKGKTFRDDWYPEYKAHRPPMP DDLVQQIEPLHAAIKAAGWPLLMVDGVEADDVIGTLATNATADGIETLISTGDKDLTQLVSSHVRWYNTMSNELLDEAGV EAKFGVPPGKIVDYLALVGDTVDGVPGVAKCGPKTALKWLAQYGSLDEVVAHANEIGGVVGQNLRDHLGFLPLGKRLVTV ACDLSNLPAPSTLTTTARDTATLRELYTRYQFRTWLGEIDGPEAAAAVPAREVSETPAAAPTAAIAVHYETVLSWPQFDA WLAKIEAAELTALDTETTSLDSFAARIVGISLSVTPGEACYIPLAHTAPGVADQLPREEVLARLKSWLESAAHKKVLQNA KYDQHVFANHGIALSGIAHDTMLQSYVIESDKGHDLGQLCTRHLGLATIAYEDLCGKGAKQITFDQVDIERAATYAAEDS DVTLRVHNVLHPQFASEPGLSRIYHEIEMPARQVIWQIERNGILIDSDVLSRQSHEMGQKIMALEAQAYELAGQPFNLAS PKQLADILFEKQGLPVKKKTPSGGPSTDEEVLSELALDYPLPKLLLEHRSLSKLKGTYTDKLPRMVNPQTGRVHTHFSQA AVVTGRLASSDPNLQNIPVRSEEGRKIRTAFIAPAGSSIVSADYSQIELRIMAHLSGDERLLDAFAHGEDVHKATAGEIF GVTPLEVGPDQRRVAKSINFGLIYGMSAFGLARQLGLERSAAQTYIDRYFARYPGVARYMEEARESARQHGYVETAFGRR LWFPDIRSSNGNRRQGAERAAINAPMQGTAADLIKLAMIAVQNWLEKSALKSRLILQVHDELLLEVPDGELMDVRTHLPR LMGQVAELKVPLVVEVGVGPNWEAAH >Mature_905_residues PLLLLVDGSSYLYRAFHALPDLRNKAGEPTGAIYGVLNMLRRLESDYKAEYKAVVFDAKGKTFRDDWYPEYKAHRPPMPD DLVQQIEPLHAAIKAAGWPLLMVDGVEADDVIGTLATNATADGIETLISTGDKDLTQLVSSHVRWYNTMSNELLDEAGVE AKFGVPPGKIVDYLALVGDTVDGVPGVAKCGPKTALKWLAQYGSLDEVVAHANEIGGVVGQNLRDHLGFLPLGKRLVTVA CDLSNLPAPSTLTTTARDTATLRELYTRYQFRTWLGEIDGPEAAAAVPAREVSETPAAAPTAAIAVHYETVLSWPQFDAW LAKIEAAELTALDTETTSLDSFAARIVGISLSVTPGEACYIPLAHTAPGVADQLPREEVLARLKSWLESAAHKKVLQNAK YDQHVFANHGIALSGIAHDTMLQSYVIESDKGHDLGQLCTRHLGLATIAYEDLCGKGAKQITFDQVDIERAATYAAEDSD VTLRVHNVLHPQFASEPGLSRIYHEIEMPARQVIWQIERNGILIDSDVLSRQSHEMGQKIMALEAQAYELAGQPFNLASP KQLADILFEKQGLPVKKKTPSGGPSTDEEVLSELALDYPLPKLLLEHRSLSKLKGTYTDKLPRMVNPQTGRVHTHFSQAA VVTGRLASSDPNLQNIPVRSEEGRKIRTAFIAPAGSSIVSADYSQIELRIMAHLSGDERLLDAFAHGEDVHKATAGEIFG VTPLEVGPDQRRVAKSINFGLIYGMSAFGLARQLGLERSAAQTYIDRYFARYPGVARYMEEARESARQHGYVETAFGRRL WFPDIRSSNGNRRQGAERAAINAPMQGTAADLIKLAMIAVQNWLEKSALKSRLILQVHDELLLEVPDGELMDVRTHLPRL MGQVAELKVPLVVEVGVGPNWEAAH
Specific function: In addition to polymerase activity, this DNA polymerase exhibits 3' to 5' and 5' to 3' exonuclease activity [H]
COG id: COG0749
COG function: function code L; DNA polymerase I - 3'-5' exonuclease and polymerase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 5'-3' exonuclease domain [H]
Homologues:
Organism=Homo sapiens, GI112420958, Length=436, Percent_Identity=32.5688073394495, Blast_Score=209, Evalue=7e-54, Organism=Homo sapiens, GI139394648, Length=269, Percent_Identity=37.546468401487, Blast_Score=184, Evalue=3e-46, Organism=Escherichia coli, GI1790294, Length=921, Percent_Identity=53.8545059717698, Blast_Score=930, Evalue=0.0, Organism=Escherichia coli, GI226510970, Length=243, Percent_Identity=30.8641975308642, Blast_Score=108, Evalue=1e-24, Organism=Caenorhabditis elegans, GI86563272, Length=406, Percent_Identity=28.5714285714286, Blast_Score=176, Evalue=5e-44, Organism=Drosophila melanogaster, GI17933644, Length=515, Percent_Identity=30.0970873786408, Blast_Score=195, Evalue=1e-49,
Paralogues:
None
Copy number: 400 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002562 - InterPro: IPR020046 - InterPro: IPR020045 - InterPro: IPR002421 - InterPro: IPR020047 - InterPro: IPR019760 - InterPro: IPR001098 - InterPro: IPR018320 - InterPro: IPR002298 - InterPro: IPR008918 - InterPro: IPR012337 [H]
Pfam domain/function: PF01612 3_5_exonuc; PF01367 5_3_exonuc; PF02739 5_3_exonuc_N; PF00476 DNA_pol_A [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 99178; Mature: 99047
Theoretical pI: Translated: 5.82; Mature: 5.82
Prosite motif: PS00447 DNA_POLYMERASE_A
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLLLLVDGSSYLYRAFHALPDLRNKAGEPTGAIYGVLNMLRRLESDYKAEYKAVVFDAK CCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECC GKTFRDDWYPEYKAHRPPMPDDLVQQIEPLHAAIKAAGWPLLMVDGVEADDVIGTLATNA CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCC TADGIETLISTGDKDLTQLVSSHVRWYNTMSNELLDEAGVEAKFGVPPGKIVDYLALVGD CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHCC TVDGVPGVAKCGPKTALKWLAQYGSLDEVVAHANEIGGVVGQNLRDHLGFLPLGKRLVTV CCCCCCCHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCEEEEE ACDLSNLPAPSTLTTTARDTATLRELYTRYQFRTWLGEIDGPEAAAAVPAREVSETPAAA EECCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHCCCCCCC PTAAIAVHYETVLSWPQFDAWLAKIEAAELTALDTETTSLDSFAARIVGISLSVTPGEAC CCHHHEEEHHHHHCCCCHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHEEEEEECCCCEE YIPLAHTAPGVADQLPREEVLARLKSWLESAAHKKVLQNAKYDQHVFANHGIALSGIAHD EEEECCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEECCHHH TMLQSYVIESDKGHDLGQLCTRHLGLATIAYEDLCGKGAKQITFDQVDIERAATYAAEDS HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCC DVTLRVHNVLHPQFASEPGLSRIYHEIEMPARQVIWQIERNGILIDSDVLSRQSHEMGQK CEEEEEECCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCEEEEHHHHHHHHHHHHHH IMALEAQAYELAGQPFNLASPKQLADILFEKQGLPVKKKTPSGGPSTDEEVLSELALDYP HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC LPKLLLEHRSLSKLKGTYTDKLPRMVNPQTGRVHTHFSQAAVVTGRLASSDPNLQNIPVR HHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCCCCCCCCC SEEGRKIRTAFIAPAGSSIVSADYSQIELRIMAHLSGDERLLDAFAHGEDVHKATAGEIF CCCCCEEEEEEECCCCCCHHHCCHHHEEEEEEEECCCCHHHHHHHHCCCHHHHHHCCCEE GVTPLEVGPDQRRVAKSINFGLIYGMSAFGLARQLGLERSAAQTYIDRYFARYPGVARYM CCCCCCCCCCHHHHHHHCCCHHEECHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHH EEARESARQHGYVETAFGRRLWFPDIRSSNGNRRQGAERAAINAPMQGTAADLIKLAMIA HHHHHHHHHCCCEEECCCCEECCCCCCCCCCCCHHCCHHHHCCCCCCCHHHHHHHHHHHH VQNWLEKSALKSRLILQVHDELLLEVPDGELMDVRTHLPRLMGQVAELKVPLVVEVGVGP HHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCC NWEAAH CCCCCC >Mature Secondary Structure PLLLLVDGSSYLYRAFHALPDLRNKAGEPTGAIYGVLNMLRRLESDYKAEYKAVVFDAK CEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECC GKTFRDDWYPEYKAHRPPMPDDLVQQIEPLHAAIKAAGWPLLMVDGVEADDVIGTLATNA CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCC TADGIETLISTGDKDLTQLVSSHVRWYNTMSNELLDEAGVEAKFGVPPGKIVDYLALVGD CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHCC TVDGVPGVAKCGPKTALKWLAQYGSLDEVVAHANEIGGVVGQNLRDHLGFLPLGKRLVTV CCCCCCCHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCEEEEE ACDLSNLPAPSTLTTTARDTATLRELYTRYQFRTWLGEIDGPEAAAAVPAREVSETPAAA EECCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHCCCCCCC PTAAIAVHYETVLSWPQFDAWLAKIEAAELTALDTETTSLDSFAARIVGISLSVTPGEAC CCHHHEEEHHHHHCCCCHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHEEEEEECCCCEE YIPLAHTAPGVADQLPREEVLARLKSWLESAAHKKVLQNAKYDQHVFANHGIALSGIAHD EEEECCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEECCHHH TMLQSYVIESDKGHDLGQLCTRHLGLATIAYEDLCGKGAKQITFDQVDIERAATYAAEDS HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCC DVTLRVHNVLHPQFASEPGLSRIYHEIEMPARQVIWQIERNGILIDSDVLSRQSHEMGQK CEEEEEECCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCEEEEHHHHHHHHHHHHHH IMALEAQAYELAGQPFNLASPKQLADILFEKQGLPVKKKTPSGGPSTDEEVLSELALDYP HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC LPKLLLEHRSLSKLKGTYTDKLPRMVNPQTGRVHTHFSQAAVVTGRLASSDPNLQNIPVR HHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCCCCCCCCC SEEGRKIRTAFIAPAGSSIVSADYSQIELRIMAHLSGDERLLDAFAHGEDVHKATAGEIF CCCCCEEEEEEECCCCCCHHHCCHHHEEEEEEEECCCCHHHHHHHHCCCHHHHHHCCCEE GVTPLEVGPDQRRVAKSINFGLIYGMSAFGLARQLGLERSAAQTYIDRYFARYPGVARYM CCCCCCCCCCHHHHHHHCCCHHEECHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHH EEARESARQHGYVETAFGRRLWFPDIRSSNGNRRQGAERAAINAPMQGTAADLIKLAMIA HHHHHHHHHCCCEEECCCCEECCCCCCCCCCCCHHCCHHHHCCCCCCCHHHHHHHHHHHH VQNWLEKSALKSRLILQVHDELLLEVPDGELMDVRTHLPRLMGQVAELKVPLVVEVGVGP HHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCC NWEAAH CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]