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The map label for this gene is 71905777

Identifier: 71905777

GI number: 71905777

Start: 150238

End: 150831

Strand: Reverse

Name: 71905777

Synonym: Daro_0135

Alternate gene names: NA

Gene position: 150831-150238 (Counterclockwise)

Preceding gene: 71905778

Following gene: 71905776

Centisome position: 3.35

GC content: 54.55

Gene sequence:

>594_bases
ATGATCCGTCTCCTCGCTTTTCTCTTCATCCTTTTAATCACCGGCCCTGCTGCCGCGCAGGCAACCCATAGTCTTGAGTT
ACTCAAGGAAGGGAGCACCGAGGGGATAAATCCACGCTACCTGCTACAGGACCCGAACGGACGTTCCGTGACCAGCGAGG
ATTTTCGCGGACGCTATCAACTGATCGCCTTCGGCTACACCTATTGCCCAGACATCTGCCCGACCACACTGGTCGAAATG
GCCGAAATCCTGAAACAGCTGGGCAAAGAGGCAAAAAACATCCAGGCCATTTTTATTTCCGTCGACCCGGAACGCGACAC
CGGCAAGATTCTCAAGACCTATACCGAGTTCTTCGACCCCCGCATTCTCGGCCTCACCGCTTCACCGGCGCTCGTCCGGC
GCACTGCCGAGAATTTCAAGGTACGCTACGCCAAAGTTCAGGAACCCGGAGCCACTTCAGACCGTTACGCCGTCGACCAT
TCTGCCGGCATGATCCTGCTTGGTCCGGATGGCAACTTCATCAAGAAGTTCGCATTTGCCATGCCTGTGTCGGAAATCAC
GGAACAGATCAGCAATCTGATCAACAATCGTTAA

Upstream 100 bases:

>100_bases
TCGAACAAGGCAAGGGTTCTGCTTGCCCCGATGCGGCAACGCTGGCCAGCAATATGGCCGCGGCTGAACAACGCCTGAAG
TCGGCCTTCGCCGGCAGCCA

Downstream 100 bases:

>100_bases
CCTGTGTAATACCCTCATTGCATTGGCATAGCCGCCATGCGATATTCCGCTGATGCTCAGGTTGCCCCGCTTTATCCTGA
TTTTACTGATTGCCCTTGCC

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MIRLLAFLFILLITGPAAAQATHSLELLKEGSTEGINPRYLLQDPNGRSVTSEDFRGRYQLIAFGYTYCPDICPTTLVEM
AEILKQLGKEAKNIQAIFISVDPERDTGKILKTYTEFFDPRILGLTASPALVRRTAENFKVRYAKVQEPGATSDRYAVDH
SAGMILLGPDGNFIKKFAFAMPVSEITEQISNLINNR

Sequences:

>Translated_197_residues
MIRLLAFLFILLITGPAAAQATHSLELLKEGSTEGINPRYLLQDPNGRSVTSEDFRGRYQLIAFGYTYCPDICPTTLVEM
AEILKQLGKEAKNIQAIFISVDPERDTGKILKTYTEFFDPRILGLTASPALVRRTAENFKVRYAKVQEPGATSDRYAVDH
SAGMILLGPDGNFIKKFAFAMPVSEITEQISNLINNR
>Mature_197_residues
MIRLLAFLFILLITGPAAAQATHSLELLKEGSTEGINPRYLLQDPNGRSVTSEDFRGRYQLIAFGYTYCPDICPTTLVEM
AEILKQLGKEAKNIQAIFISVDPERDTGKILKTYTEFFDPRILGLTASPALVRRTAENFKVRYAKVQEPGATSDRYAVDH
SAGMILLGPDGNFIKKFAFAMPVSEITEQISNLINNR

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=153, Percent_Identity=36.6013071895425, Blast_Score=114, Evalue=4e-26,
Organism=Homo sapiens, GI281182722, Length=153, Percent_Identity=36.6013071895425, Blast_Score=114, Evalue=4e-26,
Organism=Homo sapiens, GI281182716, Length=153, Percent_Identity=36.6013071895425, Blast_Score=114, Evalue=4e-26,
Organism=Homo sapiens, GI153791313, Length=153, Percent_Identity=36.6013071895425, Blast_Score=114, Evalue=4e-26,
Organism=Homo sapiens, GI4759068, Length=149, Percent_Identity=34.2281879194631, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17531419, Length=161, Percent_Identity=32.2981366459627, Blast_Score=99, Evalue=1e-21,
Organism=Saccharomyces cerevisiae, GI6319498, Length=206, Percent_Identity=31.5533980582524, Blast_Score=105, Evalue=5e-24,
Organism=Saccharomyces cerevisiae, GI6319511, Length=160, Percent_Identity=31.25, Blast_Score=91, Evalue=2e-19,
Organism=Drosophila melanogaster, GI19920710, Length=145, Percent_Identity=37.9310344827586, Blast_Score=114, Evalue=5e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 21934; Mature: 21934

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRLLAFLFILLITGPAAAQATHSLELLKEGSTEGINPRYLLQDPNGRSVTSEDFRGRYQ
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEE
LIAFGYTYCPDICPTTLVEMAEILKQLGKEAKNIQAIFISVDPERDTGKILKTYTEFFDP
EEEECCHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHCC
RILGLTASPALVRRTAENFKVRYAKVQEPGATSDRYAVDHSAGMILLGPDGNFIKKFAFA
EEEEECCCHHHHHHHHHHHEEEEEEECCCCCCCCCEEEECCCCEEEECCCCHHHHHHHHH
MPVSEITEQISNLINNR
CCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIRLLAFLFILLITGPAAAQATHSLELLKEGSTEGINPRYLLQDPNGRSVTSEDFRGRYQ
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHCCEEE
LIAFGYTYCPDICPTTLVEMAEILKQLGKEAKNIQAIFISVDPERDTGKILKTYTEFFDP
EEEECCHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHCC
RILGLTASPALVRRTAENFKVRYAKVQEPGATSDRYAVDHSAGMILLGPDGNFIKKFAFA
EEEEECCCHHHHHHHHHHHEEEEEEECCCCCCCCCEEEECCCCEEEECCCCHHHHHHHHH
MPVSEITEQISNLINNR
CCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA