| Definition | Dechloromonas aromatica RCB, complete genome. |
|---|---|
| Accession | NC_007298 |
| Length | 4,501,104 |
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The map label for this gene is 71905776
Identifier: 71905776
GI number: 71905776
Start: 149280
End: 150185
Strand: Reverse
Name: 71905776
Synonym: Daro_0134
Alternate gene names: NA
Gene position: 150185-149280 (Counterclockwise)
Preceding gene: 71905777
Following gene: 71905775
Centisome position: 3.34
GC content: 61.15
Gene sequence:
>906_bases ATGCTCAGGTTGCCCCGCTTTATCCTGATTTTACTGATTGCCCTTGCCACGCCGGCTTGGGGCGGCAGCATTGCGCTCGT TCTCAGCGAAAATGGCGGCATGTATGGCGAATTCGCCAACACCCTTGATGAGTCGCTGAGCGGTACTGCCTGGAATATTG TCTCCACCAGCGCCGGTGATTCGCCAGCAACGGCAGCCAGACCACCCGATCTGGTCGTCACGGTCGGCAGCGAAGCGCTG CGCCGGACATTGAGCCGCGGCGAGAGCACCCCGATCATCGCGACCCTGTTGCCGCGGCAGACTTACGAAAAAATCCTGAC CGAGCATCGGCGGACTTCCGGGCGCATCACCGCCATCTATCTCGACCAACCCGCCAACCGCCAGGCCGTTTTCTTGCGCC ATCTCCTGCCGGATCAGAAGCGATTCGGCATACTTTTCAGCAGTGAAACAAGAAACTCGGCCAGCCAGTACCGCCAGGCA TTCGCGTGGGCCGGCCTGGTGCTGGACAGCGAGGACAGCGATACCGAAAAGACACTCCTGCCGGCCCTGAATGCCCTGCT CACGAGAAGCGGCGCCCTGGTCGCGCTTCCCGATGCCAGCATCTACCATCGCAACAATATCAAGGCCATTCTGATCACCG CGTTCCGCCTCCAGCGACCGGTTATCGGCTACTCCACGGCCTTTGTCACGGCCGGTGCGCTGGCCGCACTGCACAGTACC CCGAGCCAGATAGCCCGCCAGACGGCGGACATGATCGTCAATAGCGGCACCAACCTGACGCCCCCGACCGGGCCGACCCA GTTTGCCATTGCCATCAATCCAAATGTTGCACAGGCACTGGGACTCAACATTCCCGATGAAGCGTCGCTACGACGCGCCA TCCTTGCTGACAGGGATGCACGATGA
Upstream 100 bases:
>100_bases GTGTCGGAAATCACGGAACAGATCAGCAATCTGATCAACAATCGTTAACCTGTGTAATACCCTCATTGCATTGGCATAGC CGCCATGCGATATTCCGCTG
Downstream 100 bases:
>100_bases ATCGTCTCACCCTCCGCCATCGCCTGCTGTTGCTAACGCTGCTCCCCAGCACGTTAATTGCCATCGCCCTGGTCACTTAT TTCACCTTCAGCGGCATCAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 301; Mature: 301
Protein sequence:
>301_residues MLRLPRFILILLIALATPAWGGSIALVLSENGGMYGEFANTLDESLSGTAWNIVSTSAGDSPATAARPPDLVVTVGSEAL RRTLSRGESTPIIATLLPRQTYEKILTEHRRTSGRITAIYLDQPANRQAVFLRHLLPDQKRFGILFSSETRNSASQYRQA FAWAGLVLDSEDSDTEKTLLPALNALLTRSGALVALPDASIYHRNNIKAILITAFRLQRPVIGYSTAFVTAGALAALHST PSQIARQTADMIVNSGTNLTPPTGPTQFAIAINPNVAQALGLNIPDEASLRRAILADRDAR
Sequences:
>Translated_301_residues MLRLPRFILILLIALATPAWGGSIALVLSENGGMYGEFANTLDESLSGTAWNIVSTSAGDSPATAARPPDLVVTVGSEAL RRTLSRGESTPIIATLLPRQTYEKILTEHRRTSGRITAIYLDQPANRQAVFLRHLLPDQKRFGILFSSETRNSASQYRQA FAWAGLVLDSEDSDTEKTLLPALNALLTRSGALVALPDASIYHRNNIKAILITAFRLQRPVIGYSTAFVTAGALAALHST PSQIARQTADMIVNSGTNLTPPTGPTQFAIAINPNVAQALGLNIPDEASLRRAILADRDAR >Mature_301_residues MLRLPRFILILLIALATPAWGGSIALVLSENGGMYGEFANTLDESLSGTAWNIVSTSAGDSPATAARPPDLVVTVGSEAL RRTLSRGESTPIIATLLPRQTYEKILTEHRRTSGRITAIYLDQPANRQAVFLRHLLPDQKRFGILFSSETRNSASQYRQA FAWAGLVLDSEDSDTEKTLLPALNALLTRSGALVALPDASIYHRNNIKAILITAFRLQRPVIGYSTAFVTAGALAALHST PSQIARQTADMIVNSGTNLTPPTGPTQFAIAINPNVAQALGLNIPDEASLRRAILADRDAR
Specific function: Unknown
COG id: COG2984
COG function: function code R; ABC-type uncharacterized transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32393; Mature: 32393
Theoretical pI: Translated: 9.95; Mature: 9.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRLPRFILILLIALATPAWGGSIALVLSENGGMYGEFANTLDESLSGTAWNIVSTSAGD CCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCC SPATAARPPDLVVTVGSEALRRTLSRGESTPIIATLLPRQTYEKILTEHRRTSGRITAIY CCCCCCCCCCEEEECCHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEE LDQPANRQAVFLRHLLPDQKRFGILFSSETRNSASQYRQAFAWAGLVLDSEDSDTEKTLL ECCCCCCHHHHHHHHCCCCHHEEEEEECCCCHHHHHHHHHHHHHCEEECCCCCCHHHHHH PALNALLTRSGALVALPDASIYHRNNIKAILITAFRLQRPVIGYSTAFVTAGALAALHST HHHHHHHHCCCCEEECCCCCEEECCCCCEEEEEEHHHHCCCCCHHHHHHHHHHHHHHHCC PSQIARQTADMIVNSGTNLTPPTGPTQFAIAINPNVAQALGLNIPDEASLRRAILADRDA HHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHCCCCCCHHHHHHHHHHCCCC R C >Mature Secondary Structure MLRLPRFILILLIALATPAWGGSIALVLSENGGMYGEFANTLDESLSGTAWNIVSTSAGD CCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCC SPATAARPPDLVVTVGSEALRRTLSRGESTPIIATLLPRQTYEKILTEHRRTSGRITAIY CCCCCCCCCCEEEECCHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEE LDQPANRQAVFLRHLLPDQKRFGILFSSETRNSASQYRQAFAWAGLVLDSEDSDTEKTLL ECCCCCCHHHHHHHHCCCCHHEEEEEECCCCHHHHHHHHHHHHHCEEECCCCCCHHHHHH PALNALLTRSGALVALPDASIYHRNNIKAILITAFRLQRPVIGYSTAFVTAGALAALHST HHHHHHHHCCCCEEECCCCCEEECCCCCEEEEEEHHHHCCCCCHHHHHHHHHHHHHHHCC PSQIARQTADMIVNSGTNLTPPTGPTQFAIAINPNVAQALGLNIPDEASLRRAILADRDA HHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHCCCCCCHHHHHHHHHHCCCC R C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA