| Definition | Dechloromonas aromatica RCB, complete genome. |
|---|---|
| Accession | NC_007298 |
| Length | 4,501,104 |
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The map label for this gene is ycbL [C]
Identifier: 71905725
GI number: 71905725
Start: 100399
End: 101313
Strand: Reverse
Name: ycbL [C]
Synonym: Daro_0083
Alternate gene names: 71905725
Gene position: 101313-100399 (Counterclockwise)
Preceding gene: 71905726
Following gene: 71905724
Centisome position: 2.25
GC content: 60.77
Gene sequence:
>915_bases ATGACCGTCAAGCTCCCTGGCAGCATGCAGGTTCTCGAACGTGGCTGGCTGTCGGCCAACAACATCCTGTTTTTCGATGG CGAGAAGGCGACGCTGGTCGACAGCGGCTATGTCACCCATGCCGGGCAAACCGTCGAGCTGGTCCGCCACTCGCTGGCCG GCCGGCAACTCAGCCGGTTGATCAACACCCATTCCCATTCCGACCACATTGGCGGCAATGCGGCCCTGAAGGCCGCCTTC GACTGCGAGATCATCGTTCCAGCCGGGCTGCACGCGGCGATTGCCGACTGGGATGAAGATGCCCTGCTTCTCTCACCGCT CGGCCAGCAGAATGCGCGCTTCCAGCACGACAGCCTGATCGGCCCCGACAACGAGATCGAGATGGGCGGCCTCAACTGGC AGGCCCTGGCTGTTCCCGGCCACGACATGGAAGCGTTGGCCTACTACAACCCGGAGCAGCGCATCCTGATCTCCGGCGAC GCGCTGTGGGAAAACGGCTTCGGCGTCATTTTCCCGGAACTGCTCGGTGAAGCAGATGGCCTGGCTAGCACCCAGGCGAC CCTGGAAATGCTTTCCCATCTGGCCATCGACACAGTCATCCCCGGTCACGGCCGACCGTTCTCCACCGTTGATGCTGCAT TCGAGCGCGCTTTCCGGCGCCTCAACCAGTTCCAGAACAATATCGAACAGCTGGCCTGGCACGCCATCAAGGTCATCGTC GCCTTTGCCATGATGGAAAAACGGCGGATCGTGAAAAACGACTTTCCGGCCTTTGTCCTCGCCCTGCCCTTCGCCGTTGA CGTCAATACCCGTTTTCTCAGCATGGCAGATGACGCCCTGGTCGCCAAGATCGAACGCGAATTGCTACTGGTTAACGCCC TTAGGCTTGAAGACGGCATGATCCTCGCCGGTTAA
Upstream 100 bases:
>100_bases GCTGCGGCCGCCCGCCGCTCGGCGAACCCGGCATCGTGGCCGAATTGACCCAAGCCACAACGGCAGTGCCCAGCACGCAT GGTGACCCGGACACACCTGA
Downstream 100 bases:
>100_bases ATCGGCTGGCTTGCCAAGAACCGACCAGCACAATCAAGCCCTTAATTAAACCAGGGGTTTTCCATCAGTTTCCGTCACCG CTTGTTGCTGGGGACCGCCC
Product: Beta-lactamase-like
Products: NA
Alternate protein names: Beta-Lactamase Domain-Containing Protein; Beta-Lactamase-Like; Beta-Lactamase-Like Protein; Metallo-Beta-Lactamase Superfamily Protein; Hydroxyacylglutathione Hydrolase; Beta Lactamase; Beta Lactamase Protein; Beta-Lactamase
Number of amino acids: Translated: 304; Mature: 303
Protein sequence:
>304_residues MTVKLPGSMQVLERGWLSANNILFFDGEKATLVDSGYVTHAGQTVELVRHSLAGRQLSRLINTHSHSDHIGGNAALKAAF DCEIIVPAGLHAAIADWDEDALLLSPLGQQNARFQHDSLIGPDNEIEMGGLNWQALAVPGHDMEALAYYNPEQRILISGD ALWENGFGVIFPELLGEADGLASTQATLEMLSHLAIDTVIPGHGRPFSTVDAAFERAFRRLNQFQNNIEQLAWHAIKVIV AFAMMEKRRIVKNDFPAFVLALPFAVDVNTRFLSMADDALVAKIERELLLVNALRLEDGMILAG
Sequences:
>Translated_304_residues MTVKLPGSMQVLERGWLSANNILFFDGEKATLVDSGYVTHAGQTVELVRHSLAGRQLSRLINTHSHSDHIGGNAALKAAF DCEIIVPAGLHAAIADWDEDALLLSPLGQQNARFQHDSLIGPDNEIEMGGLNWQALAVPGHDMEALAYYNPEQRILISGD ALWENGFGVIFPELLGEADGLASTQATLEMLSHLAIDTVIPGHGRPFSTVDAAFERAFRRLNQFQNNIEQLAWHAIKVIV AFAMMEKRRIVKNDFPAFVLALPFAVDVNTRFLSMADDALVAKIERELLLVNALRLEDGMILAG >Mature_303_residues TVKLPGSMQVLERGWLSANNILFFDGEKATLVDSGYVTHAGQTVELVRHSLAGRQLSRLINTHSHSDHIGGNAALKAAFD CEIIVPAGLHAAIADWDEDALLLSPLGQQNARFQHDSLIGPDNEIEMGGLNWQALAVPGHDMEALAYYNPEQRILISGDA LWENGFGVIFPELLGEADGLASTQATLEMLSHLAIDTVIPGHGRPFSTVDAAFERAFRRLNQFQNNIEQLAWHAIKVIVA FAMMEKRRIVKNDFPAFVLALPFAVDVNTRFLSMADDALVAKIERELLLVNALRLEDGMILAG
Specific function: Unknown
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33327; Mature: 33195
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVKLPGSMQVLERGWLSANNILFFDGEKATLVDSGYVTHAGQTVELVRHSLAGRQLSRL CEEECCCCHHHHHHCCCCCCCEEEECCCCEEEEECCCEECCCCHHHHHHHHHHHHHHHHH INTHSHSDHIGGNAALKAAFDCEIIVPAGLHAAIADWDEDALLLSPLGQQNARFQHDSLI HHCCCCCCCCCCCCEEEEEECEEEEECCCCCHHHCCCCCCEEEECCCCCCCCCCCCCCCC GPDNEIEMGGLNWQALAVPGHDMEALAYYNPEQRILISGDALWENGFGVIFPELLGEADG CCCCCEEECCCCEEEEEECCCCCCEEEEECCCCEEEEECCEEEECCCCEECHHHCCCCCC LASTQATLEMLSHLAIDTVIPGHGRPFSTVDAAFERAFRRLNQFQNNIEQLAWHAIKVIV CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AFAMMEKRRIVKNDFPAFVLALPFAVDVNTRFLSMADDALVAKIERELLLVNALRLEDGM HHHHHHHHHHHHCCCCEEEEEECEEEECCCCEEHHHHHHHHHHHHHHHHHHHHEEECCCE ILAG EECC >Mature Secondary Structure TVKLPGSMQVLERGWLSANNILFFDGEKATLVDSGYVTHAGQTVELVRHSLAGRQLSRL EEECCCCHHHHHHCCCCCCCEEEECCCCEEEEECCCEECCCCHHHHHHHHHHHHHHHHH INTHSHSDHIGGNAALKAAFDCEIIVPAGLHAAIADWDEDALLLSPLGQQNARFQHDSLI HHCCCCCCCCCCCCEEEEEECEEEEECCCCCHHHCCCCCCEEEECCCCCCCCCCCCCCCC GPDNEIEMGGLNWQALAVPGHDMEALAYYNPEQRILISGDALWENGFGVIFPELLGEADG CCCCCEEECCCCEEEEEECCCCCCEEEEECCCCEEEEECCEEEECCCCEECHHHCCCCCC LASTQATLEMLSHLAIDTVIPGHGRPFSTVDAAFERAFRRLNQFQNNIEQLAWHAIKVIV CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AFAMMEKRRIVKNDFPAFVLALPFAVDVNTRFLSMADDALVAKIERELLLVNALRLEDGM HHHHHHHHHHHHCCCCEEEEEECEEEECCCCEEHHHHHHHHHHHHHHHHHHHHEEECCCE ILAG EECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA