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The map label for this gene is yhdW [H]

Identifier: 71910460

GI number: 71910460

Start: 652373

End: 654106

Strand: Direct

Name: yhdW [H]

Synonym: M5005_Spy_0647

Alternate gene names: 71910460

Gene position: 652373-654106 (Clockwise)

Preceding gene: 71910459

Following gene: 71910461

Centisome position: 35.48

GC content: 31.49

Gene sequence:

>1734_bases
ATGACATTTTTATCTGATTTGATATCATTAATGACAAAAATCAGATTATCTTGGGTAATAAAGGCGGGTATTTTTCAATT
ATTATTTGTAACGATTGCTAATATTGTCTTATCAGAATTTTTCTATTTTATATTAGACGTTACTGGTCAATATCATTTAG
ATAAAGACAATGTTGTGACTTTTTTAAAAAATCCTATAGCACTTGCTTTATTAGGTGCCTATTTATTTTTATTAGCTGCT
TTTATTCACCTTGAGTTTTTTGCTCTATATCGAATTATTGCGGATCAAGAAATTAGTTTCTATCTTTTTAGAAAACAGTT
TTCTTATTACCTAAGGGGGCTTTGGAAAACATTTTCTGGTTACCAATTATTACTTTTTTTGCTTTATATCCTATTGACTA
TTCCAGTCTTACATATTGGTTTATCTTCTGTGATTACTCAAAAGCTTTATCTTCCAGAATTTATTGTTGGGGAATTATCA
AAGATAACTAGCACAAAGTACTTGCTTTATGGCAGTCTTATTCTTGTGTTTTACCTTAACCTAAGATTAGTATATTTTTT
ACCATTGATAGCAATCAACCATCGTACGGTTGCTCAAGCATGGAGAGAGAGTTGGCAAAAGACTAAAAAGAAACATGTAT
TGTTATGGATGAAACTTTTTGCAATCAATGGTCTTACGATTGTAGTCTTATCGCTAGCTATTTCCATGATTCTTATTTTT
GTTGATATGTTTAATCCTAAGGGGAATAATATTATTGTTCAGCTGGGAGCTTTGACCTTTACATGGGAACTCATTTTTTT
TACTACTATTTTTTTTAAACTCTGTTCAGCAATGATTTTAAAAGAGGCAATTGAACCACAAAAGCAATATGATGAGCCAA
GAAGAAGTAATAAGGCATATGTTGTAATCTTTATCGTGGTTACAGTAGGTTTTGCTTATCAATCTCTTGAACGTTTAACT
TTTTTTGACACATCTCACTCTAAGACAGTTATCGCGCATAGAGGACTTGTATCAGCAGGTGTAGAAAATTCTTTGGAAGC
CCTTGAAGGTGCTAAGAAAGCAGGAAGTGATTATGTAGAACTGGATCTAATCTTGACTAAGGATAATCACTTTGTGGTGT
CTCATGATAATCGATTGAAGCGTTTAGCTGGAGTAAATAAGACGATTCGCAACTTAACCTTAAAAGAAGTTGAACATCTA
ACGAGTCATCAAGGACATTTTTCAGGGCGTTTTGTTTCTTTTGACACCTTTTATCAAAAGGCTAAGAAGTTGAATATGCC
ATTACTTATTGAACTCAAGCCAATTGGTACAGAACCTGGAAATTATGTCGATTTGTTTTTAGAAACTTATCATCGACTTG
GTATAAGCAAAGATAATAAAGTCATGTCTTTAGATTTAGAAGTAATAGAAGCTATCAAGAAAAAAAATCCATCAATTACG
ACTGGTTATATCATACCAATTCAATTTGGATTTTTTGGAGATGAATTTGTTGATTTCTATGTCATTGAAGACTTTTCTTA
TCGGTCTTATTTGTCGTCCCAAGCTTTTTGGAATAATAAAGAAATTTACGTTTGGACTATTAATGATCCCAAGCGCATAG
AGCATTATCTCCTAAAGCCTATTCAGGGAATTATTACAGACCAACCAGCTTTAACTAATCAATTGATTAAAGACTTAAAA
CAAGATAATTCTTATTTTAGTCGATTAGTCAGAATTATTAGTAGTCTTTATTAA

Upstream 100 bases:

>100_bases
GATAGCGTATAAGTGATACATCTCTTATTTCTAGCTGAACTTCGGTTCGGCTAGGAAGTTGTCAGGCAATGAGTTGTTTA
AAATAAAGGAGATTAGTTCA

Downstream 100 bases:

>100_bases
AGGTTTAAGGAAAGTGTCAAGAAAAAAACTTGACACTTTCTTTAAACTGAGTTATACTGTTTAACATAGGAATTTAGCGT
AGCTGTATTTCTTATACATT

Product: glycerophosphoryl diester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 577; Mature: 576

Protein sequence:

>577_residues
MTFLSDLISLMTKIRLSWVIKAGIFQLLFVTIANIVLSEFFYFILDVTGQYHLDKDNVVTFLKNPIALALLGAYLFLLAA
FIHLEFFALYRIIADQEISFYLFRKQFSYYLRGLWKTFSGYQLLLFLLYILLTIPVLHIGLSSVITQKLYLPEFIVGELS
KITSTKYLLYGSLILVFYLNLRLVYFLPLIAINHRTVAQAWRESWQKTKKKHVLLWMKLFAINGLTIVVLSLAISMILIF
VDMFNPKGNNIIVQLGALTFTWELIFFTTIFFKLCSAMILKEAIEPQKQYDEPRRSNKAYVVIFIVVTVGFAYQSLERLT
FFDTSHSKTVIAHRGLVSAGVENSLEALEGAKKAGSDYVELDLILTKDNHFVVSHDNRLKRLAGVNKTIRNLTLKEVEHL
TSHQGHFSGRFVSFDTFYQKAKKLNMPLLIELKPIGTEPGNYVDLFLETYHRLGISKDNKVMSLDLEVIEAIKKKNPSIT
TGYIIPIQFGFFGDEFVDFYVIEDFSYRSYLSSQAFWNNKEIYVWTINDPKRIEHYLLKPIQGIITDQPALTNQLIKDLK
QDNSYFSRLVRIISSLY

Sequences:

>Translated_577_residues
MTFLSDLISLMTKIRLSWVIKAGIFQLLFVTIANIVLSEFFYFILDVTGQYHLDKDNVVTFLKNPIALALLGAYLFLLAA
FIHLEFFALYRIIADQEISFYLFRKQFSYYLRGLWKTFSGYQLLLFLLYILLTIPVLHIGLSSVITQKLYLPEFIVGELS
KITSTKYLLYGSLILVFYLNLRLVYFLPLIAINHRTVAQAWRESWQKTKKKHVLLWMKLFAINGLTIVVLSLAISMILIF
VDMFNPKGNNIIVQLGALTFTWELIFFTTIFFKLCSAMILKEAIEPQKQYDEPRRSNKAYVVIFIVVTVGFAYQSLERLT
FFDTSHSKTVIAHRGLVSAGVENSLEALEGAKKAGSDYVELDLILTKDNHFVVSHDNRLKRLAGVNKTIRNLTLKEVEHL
TSHQGHFSGRFVSFDTFYQKAKKLNMPLLIELKPIGTEPGNYVDLFLETYHRLGISKDNKVMSLDLEVIEAIKKKNPSIT
TGYIIPIQFGFFGDEFVDFYVIEDFSYRSYLSSQAFWNNKEIYVWTINDPKRIEHYLLKPIQGIITDQPALTNQLIKDLK
QDNSYFSRLVRIISSLY
>Mature_576_residues
TFLSDLISLMTKIRLSWVIKAGIFQLLFVTIANIVLSEFFYFILDVTGQYHLDKDNVVTFLKNPIALALLGAYLFLLAAF
IHLEFFALYRIIADQEISFYLFRKQFSYYLRGLWKTFSGYQLLLFLLYILLTIPVLHIGLSSVITQKLYLPEFIVGELSK
ITSTKYLLYGSLILVFYLNLRLVYFLPLIAINHRTVAQAWRESWQKTKKKHVLLWMKLFAINGLTIVVLSLAISMILIFV
DMFNPKGNNIIVQLGALTFTWELIFFTTIFFKLCSAMILKEAIEPQKQYDEPRRSNKAYVVIFIVVTVGFAYQSLERLTF
FDTSHSKTVIAHRGLVSAGVENSLEALEGAKKAGSDYVELDLILTKDNHFVVSHDNRLKRLAGVNKTIRNLTLKEVEHLT
SHQGHFSGRFVSFDTFYQKAKKLNMPLLIELKPIGTEPGNYVDLFLETYHRLGISKDNKVMSLDLEVIEAIKKKNPSITT
GYIIPIQFGFFGDEFVDFYVIEDFSYRSYLSSQAFWNNKEIYVWTINDPKRIEHYLLKPIQGIITDQPALTNQLIKDLKQ
DNSYFSRLVRIISSLY

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG4781

COG function: function code C; Membrane domain of membrane-anchored glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 66748; Mature: 66617

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TFLSDLISLMTKIRLSWVIKAGIFQLLFVTIANIVLSEFFYFILDVTGQYHLDKDNVVT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHH
FLKNPIALALLGAYLFLLAAFIHLEFFALYRIIADQEISFYLFRKQFSYYLRGLWKTFSG
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCH
YQLLLFLLYILLTIPVLHIGLSSVITQKLYLPEFIVGELSKITSTKYLLYGSLILVFYLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRLVYFLPLIAINHRTVAQAWRESWQKTKKKHVLLWMKLFAINGLTIVVLSLAISMILIF
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
VDMFNPKGNNIIVQLGALTFTWELIFFTTIFFKLCSAMILKEAIEPQKQYDEPRRSNKAY
HHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHCCCCE
VVIFIVVTVGFAYQSLERLTFFDTSHSKTVIAHRGLVSAGVENSLEALEGAKKAGSDYVE
EEEEHHHHHHHHHHHHHHHEEEECCCCCEEEEECCHHHHCHHHHHHHHHHHHHCCCCEEE
LDLILTKDNHFVVSHDNRLKRLAGVNKTIRNLTLKEVEHLTSHQGHFSGRFVSFDTFYQK
EEEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHH
AKKLNMPLLIELKPIGTEPGNYVDLFLETYHRLGISKDNKVMSLDLEVIEAIKKKNPSIT
HHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHCCCCCEE
TGYIIPIQFGFFGDEFVDFYVIEDFSYRSYLSSQAFWNNKEIYVWTINDPKRIEHYLLKP
EEEEEEEEECCCCCCCEEEEEEECCCHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHH
IQGIITDQPALTNQLIKDLKQDNSYFSRLVRIISSLY
HHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]