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The map label for this gene is scaR [H]

Identifier: 71910180

GI number: 71910180

Start: 371286

End: 371933

Strand: Reverse

Name: scaR [H]

Synonym: M5005_Spy_0367

Alternate gene names: 71910180

Gene position: 371933-371286 (Counterclockwise)

Preceding gene: 71910184

Following gene: 71910170

Centisome position: 20.23

GC content: 40.28

Gene sequence:

>648_bases
ATGACGCCTAATAAAGAAGATTACTTGAAATGTATTTATGAAATTGGAGAACAAGAACCCAAGATTACAAATAAAATGGT
TGCAGAAAAGATGCACGTTTCGGCACCTGCCGTTTCAGAGATGATTAAAAAAATGATTTCACAAGGCTGGATTGTCAAAG
ATAAAGCAAAAGGCTATTTGCTAAAAGACAAAGGCTATGCTCTTGTTGCTAACCTCTACCGCAAACACCGCTTGATTGAG
GTATTTTTGATTCATCAGCTGGGCTATAATACCCAAGAAGTGCACCAAGAAGCTGAAGTCTTAGAGCACACTGTCTCAGA
CTCCTTTATCGACCGTTTAGACAAGATCCTTGATTTTCCAGATTTCTGCCCACACGGAGGGACTATTCCTCGCTATGGTC
AGCCTCTTGTCGAAATGAACACTACAACTCTCAACACCATCACGGAGTTGGGACGGTTTCGTCTAAGCAGAATCCACGAC
CACTTTGATTTAATCCAGTATCTAGAAGCACATCACCTCAATATCAATACCGAGCTAACCTTAACTCAAATTGATACCTT
TGCAAAAACCTATACGATTTGTTATGGCGACAAGGAACTTGTCATCCCTGAAAATATTGCTAAGCAACTTTATGTCACAG
CCCTTTAA

Upstream 100 bases:

>100_bases
AATTATGCTATAAGGATATCCTCTTTTAGGCTTTTTGTCAAGCTTTTTCCTAAAAATTCTGATATAATAATCATTATAAA
TAAGAGAAAGGCCAAACGAT

Downstream 100 bases:

>100_bases
CCCCTTGCGTCTCCTCAAAAAAAGAGGCCACACTCATTTAAATTTAAATGAGTGTGGCCTCTTTTTTTGAGGGGCTAGTC
GCCATTTTTAAGCCTTTGAC

Product: iron-dependent repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 214

Protein sequence:

>215_residues
MTPNKEDYLKCIYEIGEQEPKITNKMVAEKMHVSAPAVSEMIKKMISQGWIVKDKAKGYLLKDKGYALVANLYRKHRLIE
VFLIHQLGYNTQEVHQEAEVLEHTVSDSFIDRLDKILDFPDFCPHGGTIPRYGQPLVEMNTTTLNTITELGRFRLSRIHD
HFDLIQYLEAHHLNINTELTLTQIDTFAKTYTICYGDKELVIPENIAKQLYVTAL

Sequences:

>Translated_215_residues
MTPNKEDYLKCIYEIGEQEPKITNKMVAEKMHVSAPAVSEMIKKMISQGWIVKDKAKGYLLKDKGYALVANLYRKHRLIE
VFLIHQLGYNTQEVHQEAEVLEHTVSDSFIDRLDKILDFPDFCPHGGTIPRYGQPLVEMNTTTLNTITELGRFRLSRIHD
HFDLIQYLEAHHLNINTELTLTQIDTFAKTYTICYGDKELVIPENIAKQLYVTAL
>Mature_214_residues
TPNKEDYLKCIYEIGEQEPKITNKMVAEKMHVSAPAVSEMIKKMISQGWIVKDKAKGYLLKDKGYALVANLYRKHRLIEV
FLIHQLGYNTQEVHQEAEVLEHTVSDSFIDRLDKILDFPDFCPHGGTIPRYGQPLVEMNTTTLNTITELGRFRLSRIHDH
FDLIQYLEAHHLNINTELTLTQIDTFAKTYTICYGDKELVIPENIAKQLYVTAL

Specific function: Metal-dependent DNA-binding protein that controls transcription of many genes involved in iron metabolism [H]

COG id: COG1321

COG function: function code K; Mn-dependent transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH dtxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007167
- InterPro:   IPR001367
- InterPro:   IPR022689
- InterPro:   IPR022687
- InterPro:   IPR008988
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02742 Fe_dep_repr_C; PF01325 Fe_dep_repress; PF04023 FeoA [H]

EC number: NA

Molecular weight: Translated: 24839; Mature: 24708

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50944 HTH_DTXR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPNKEDYLKCIYEIGEQEPKITNKMVAEKMHVSAPAVSEMIKKMISQGWIVKDKAKGYL
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEECCCCEE
LKDKGYALVANLYRKHRLIEVFLIHQLGYNTQEVHQEAEVLEHTVSDSFIDRLDKILDFP
ECCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DFCPHGGTIPRYGQPLVEMNTTTLNTITELGRFRLSRIHDHFDLIQYLEAHHLNINTELT
CCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
LTQIDTFAKTYTICYGDKELVIPENIAKQLYVTAL
HHHHHHHHHHEEEEECCCEEECCHHHHHHHHHHCC
>Mature Secondary Structure 
TPNKEDYLKCIYEIGEQEPKITNKMVAEKMHVSAPAVSEMIKKMISQGWIVKDKAKGYL
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEECCCCEE
LKDKGYALVANLYRKHRLIEVFLIHQLGYNTQEVHQEAEVLEHTVSDSFIDRLDKILDFP
ECCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DFCPHGGTIPRYGQPLVEMNTTTLNTITELGRFRLSRIHDHFDLIQYLEAHHLNINTELT
CCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
LTQIDTFAKTYTICYGDKELVIPENIAKQLYVTAL
HHHHHHHHHHEEEEECCCEEECCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]