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The map label for this gene is rimM

Identifier: 71891961

GI number: 71891961

Start: 227396

End: 227965

Strand: Direct

Name: rimM

Synonym: BPEN_180

Alternate gene names: 71891961

Gene position: 227396-227965 (Clockwise)

Preceding gene: 71891960

Following gene: 71891962

Centisome position: 28.72

GC content: 29.47

Gene sequence:

>570_bases
GTGAAACATGATGAATATTCAATAAATAAAGAAGATGTTATGATCCCGCCCCTTCATCCCGTAGTAATAGGAAGAATAAT
AGGAGCATATGGTATATTGGGGTGGGTACGGATATTATCATTTACTGAAAAAAATGATAATATATTTTATTATAGTCCGT
ATTTTATTATCGTCCAATCTACATGGAAAGAAATTTTTTTAGATAAATGGAAACTAATTGGGAAACGTTATATTGTTAAA
ATACGAGGAGTCTCAAATAGAAATTCTGCTCAGTCATTAAGTCGTTGCAATATTATTATTGATGAAACACAATTTCCATG
TATAAACGATGATGAATATTATTGGAAAGATTTAATAGGATGTGTAGTAATCACCGTACAAGGGGTCCTTTTAGGAGATA
TTATCAGTATAATAGAAACTACAGCAAATGATGTTTTGGTAGTAAAAATGTGTCAAAATAATCTTTATAAAATCAAAAAT
TGCCTTATTCCTTTTCTTATCAAGAGAGTTATTAAAAATATCAATCTTGTCACACGTACTGTTACCGTAGATTGGGATCC
TAATTTTTAG

Upstream 100 bases:

>100_bases
GCACAGGATTAGGATTACGTGTAAATTTAGAACGTGTAAAATATTGGTTATACAAAGGAGCAAGTCCATCTGATCGTGTT
TTAAAATTAATAAAGAATTT

Downstream 100 bases:

>100_bases
TTTTTTAAAATAAAGTATAAAAAAATATGTTGTTAGGTGTGATTACTTTATTCCCAGATATGTTTCAATCTATTGTTCGT
TATGGAATAGTAGGTCGAGC

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MKHDEYSINKEDVMIPPLHPVVIGRIIGAYGILGWVRILSFTEKNDNIFYYSPYFIIVQSTWKEIFLDKWKLIGKRYIVK
IRGVSNRNSAQSLSRCNIIIDETQFPCINDDEYYWKDLIGCVVITVQGVLLGDIISIIETTANDVLVVKMCQNNLYKIKN
CLIPFLIKRVIKNINLVTRTVTVDWDPNF

Sequences:

>Translated_189_residues
MKHDEYSINKEDVMIPPLHPVVIGRIIGAYGILGWVRILSFTEKNDNIFYYSPYFIIVQSTWKEIFLDKWKLIGKRYIVK
IRGVSNRNSAQSLSRCNIIIDETQFPCINDDEYYWKDLIGCVVITVQGVLLGDIISIIETTANDVLVVKMCQNNLYKIKN
CLIPFLIKRVIKNINLVTRTVTVDWDPNF
>Mature_189_residues
MKHDEYSINKEDVMIPPLHPVVIGRIIGAYGILGWVRILSFTEKNDNIFYYSPYFIIVQSTWKEIFLDKWKLIGKRYIVK
IRGVSNRNSAQSLSRCNIIIDETQFPCINDDEYYWKDLIGCVVITVQGVLLGDIISIIETTANDVLVVKMCQNNLYKIKN
CLIPFLIKRVIKNINLVTRTVTVDWDPNF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=182, Percent_Identity=41.2087912087912, Blast_Score=179, Evalue=1e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_BLOPB (Q493M2)

Other databases:

- EMBL:   CP000016
- RefSeq:   YP_277691.1
- ProteinModelPortal:   Q493M2
- SMR:   Q493M2
- STRING:   Q493M2
- GeneID:   3562675
- GenomeReviews:   CP000016_GR
- KEGG:   bpn:BPEN_180
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   AYGIRGW
- ProtClustDB:   PRK00122
- BioCyc:   CBLO291272:BPEN_180-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 21949; Mature: 21949

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHDEYSINKEDVMIPPLHPVVIGRIIGAYGILGWVRILSFTEKNDNIFYYSPYFIIVQS
CCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEEEEEH
TWKEIFLDKWKLIGKRYIVKIRGVSNRNSAQSLSRCNIIIDETQFPCINDDEYYWKDLIG
HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHCEEEEECCCCCCCCCCHHHHHHHHH
CVVITVQGVLLGDIISIIETTANDVLVVKMCQNNLYKIKNCLIPFLIKRVIKNINLVTRT
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHCCHHHHHHHHHHHHHHHHHHCCEEEEEE
VTVDWDPNF
EEEECCCCC
>Mature Secondary Structure
MKHDEYSINKEDVMIPPLHPVVIGRIIGAYGILGWVRILSFTEKNDNIFYYSPYFIIVQS
CCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEEEEEH
TWKEIFLDKWKLIGKRYIVKIRGVSNRNSAQSLSRCNIIIDETQFPCINDDEYYWKDLIG
HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHCEEEEECCCCCCCCCCHHHHHHHHH
CVVITVQGVLLGDIISIIETTANDVLVVKMCQNNLYKIKNCLIPFLIKRVIKNINLVTRT
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHCCHHHHHHHHHHHHHHHHHHCCEEEEEE
VTVDWDPNF
EEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA