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The map label for this gene is orn [H]

Identifier: 71891864

GI number: 71891864

Start: 93133

End: 93696

Strand: Direct

Name: orn [H]

Synonym: BPEN_077

Alternate gene names: 71891864

Gene position: 93133-93696 (Clockwise)

Preceding gene: 71891861

Following gene: 71891865

Centisome position: 11.76

GC content: 32.62

Gene sequence:

>564_bases
ATGCGTGATGACAATTTGATATGGATTGATCTAGAGATGACTGGACTAAATCCAGAATGGGATCGTATTTTGGAAATAGC
TACTTTAGTTACCGATAGTAAATTGAATATTTTATCAGAGGGTCCTGTTATATCAATACATCAATCTGAATCTCAGCTGT
TATTAATGGATGATTGGAACACACGTGTTCATAGTGCTACTGGATTAATAGAAAAGGTGAGATGTAGTACATTAGATGAG
ACTAGCGCATCTAATTTGACAATAAAATTTTTAAGAAATTGGGTCGGTTTTAAAAAATCACCGATATGCGGAAACAGTAT
AGCTCAGGATCGTCTATTTTTATTTCGATATATGCCAGAATTAGAATCATATTTTAATCATCGTTATTTGGATGTGAGCA
CGATTAAAGAATTAATGGTTCGTTGGAGACCAGATTTGATATCTGGATTACGGTTACAGAAAACCCATTGTGCATTAGAT
GACATTCGTGAATCTGTTTCAGAATTAATGTATTATCGCAAGCATTTTATACAATTACAAGATGCCATAAAATTAATAAT
ATAG

Upstream 100 bases:

>100_bases
AGATTAAGAATAATGGAATAATATGAATAAAATAATTTAGTACTGTAGTAATGTCATTTATTGAAGTAAAGATTCGGTAT
ATAAATGCAAGCGGGGTTAT

Downstream 100 bases:

>100_bases
ATATTATTTGAAAGCGTAAGAAAAATCAATTAATAAGATAGTTAGTTGATGCGGTTTGTAACCTGTTGCTAAATATACGA
TGCAGATTCATTGAAATAAT

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MRDDNLIWIDLEMTGLNPEWDRILEIATLVTDSKLNILSEGPVISIHQSESQLLLMDDWNTRVHSATGLIEKVRCSTLDE
TSASNLTIKFLRNWVGFKKSPICGNSIAQDRLFLFRYMPELESYFNHRYLDVSTIKELMVRWRPDLISGLRLQKTHCALD
DIRESVSELMYYRKHFIQLQDAIKLII

Sequences:

>Translated_187_residues
MRDDNLIWIDLEMTGLNPEWDRILEIATLVTDSKLNILSEGPVISIHQSESQLLLMDDWNTRVHSATGLIEKVRCSTLDE
TSASNLTIKFLRNWVGFKKSPICGNSIAQDRLFLFRYMPELESYFNHRYLDVSTIKELMVRWRPDLISGLRLQKTHCALD
DIRESVSELMYYRKHFIQLQDAIKLII
>Mature_187_residues
MRDDNLIWIDLEMTGLNPEWDRILEIATLVTDSKLNILSEGPVISIHQSESQLLLMDDWNTRVHSATGLIEKVRCSTLDE
TSASNLTIKFLRNWVGFKKSPICGNSIAQDRLFLFRYMPELESYFNHRYLDVSTIKELMVRWRPDLISGLRLQKTHCALD
DIRESVSELMYYRKHFIQLQDAIKLII

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI224496106, Length=173, Percent_Identity=41.6184971098266, Blast_Score=141, Evalue=4e-34,
Organism=Escherichia coli, GI87082382, Length=177, Percent_Identity=65.5367231638418, Blast_Score=261, Evalue=3e-71,
Organism=Caenorhabditis elegans, GI17557752, Length=169, Percent_Identity=46.7455621301775, Blast_Score=144, Evalue=2e-35,
Organism=Saccharomyces cerevisiae, GI6323088, Length=182, Percent_Identity=30.7692307692308, Blast_Score=90, Evalue=2e-19,
Organism=Drosophila melanogaster, GI21355135, Length=177, Percent_Identity=41.2429378531073, Blast_Score=156, Evalue=9e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 21888; Mature: 21888

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDDNLIWIDLEMTGLNPEWDRILEIATLVTDSKLNILSEGPVISIHQSESQLLLMDDWN
CCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCCCEECCCCEEEEECCCCCEEEEECCC
TRVHSATGLIEKVRCSTLDETSASNLTIKFLRNWVGFKKSPICGNSIAQDRLFLFRYMPE
CHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
LESYFNHRYLDVSTIKELMVRWRPDLISGLRLQKTHCALDDIRESVSELMYYRKHFIQLQ
HHHHHCCCCCCHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DAIKLII
HHHHHCC
>Mature Secondary Structure
MRDDNLIWIDLEMTGLNPEWDRILEIATLVTDSKLNILSEGPVISIHQSESQLLLMDDWN
CCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCCCEECCCCEEEEECCCCCEEEEECCC
TRVHSATGLIEKVRCSTLDETSASNLTIKFLRNWVGFKKSPICGNSIAQDRLFLFRYMPE
CHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
LESYFNHRYLDVSTIKELMVRWRPDLISGLRLQKTHCALDDIRESVSELMYYRKHFIQLQ
HHHHHCCCCCCHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DAIKLII
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA