Click here to switch to the map view.

The map label for this gene is psd

Identifier: 71891863

GI number: 71891863

Start: 91537

End: 92424

Strand: Reverse

Name: psd

Synonym: BPEN_076

Alternate gene names: 71891863

Gene position: 92424-91537 (Counterclockwise)

Preceding gene: 71891879

Following gene: 71891862

Centisome position: 11.67

GC content: 33.9

Gene sequence:

>888_bases
ATGTTAGAAAAAATACAGATTTTATTGCAATATTTACTACCAAAATACTGGATTACTTATTTGGTAGGACTTGGGGCCTC
TTGGAAAGGTGGATGGATAACACGTTATGCTATTTTGCTATTCATCCATATTTATAAAATAGACATGAAAGAATCCGATA
AACCTAATTTAACTGATTATGCAACGTTTAATGCATTTTTTACTCGAAAGCTACATAAAAATGCCCGGCCTATCGATACC
AACCCATCTACGTTAATTATCCCGGCTGATGGGATCATCACTCAAATAGGAAAAATAAACCAAACAAATATCTTTCGAGT
AAAAAATGCCCCGTACCATTTGGATGGGTTACTAGCAGGTCATGACAATATCATTGACTATTTTATTAATGGAAGTTTCG
TTATTATTTATATACCCCCACAAAACTGCCATCGTATCTACATGCCTTGTACAGGCACACTCCGTGAAGTACTATATATA
CCCGGTAATTTATTTTCAGTACATCCAAAAATTACTAAAAACATGCCTAATATATTTTCTCGCAATGAAAGAGTCATTTG
TTTATTTGAAACAGATTTTGGCTATATGGCTCAAATTTTAATTGGTGCTATAATAGTAGGGAGTATTGAAACTACATGGC
TAGGCACCATTACCCCTCCACGCGAAGGTATTGTTAGACATTGGCGTTACTCATCAAATAACACAAATACCGATGCCGAT
GATTCAATAATCTTACAAAAAGGACATGAAATGGGTTTATTTAAGTTAGGATCTACTGTTATTAATTTGTTCGGTGATAA
AAAAGTTATTTTAAACAATCTACTACAACCGTATGATATTGCTCGTATTGGAATGCCTTTAGCGCACGGACATAGTCAAA
AAAAATAA

Upstream 100 bases:

>100_bases
TTGGAAGAAATATGAATTTCCAATACAATCTAACAGCGAAATACATAATCTAATCACTATCTCATAATTACAAATTAATC
ATCCAAATTAGGTATACATT

Downstream 100 bases:

>100_bases
TCACACGTAATTTACATTATATATTTTTCGGAATCATACAATAATCTTGTGTATATATGGTTACTATTCAAAAGAAAACT
ATATTTTTTAAATATTTTTT

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MLEKIQILLQYLLPKYWITYLVGLGASWKGGWITRYAILLFIHIYKIDMKESDKPNLTDYATFNAFFTRKLHKNARPIDT
NPSTLIIPADGIITQIGKINQTNIFRVKNAPYHLDGLLAGHDNIIDYFINGSFVIIYIPPQNCHRIYMPCTGTLREVLYI
PGNLFSVHPKITKNMPNIFSRNERVICLFETDFGYMAQILIGAIIVGSIETTWLGTITPPREGIVRHWRYSSNNTNTDAD
DSIILQKGHEMGLFKLGSTVINLFGDKKVILNNLLQPYDIARIGMPLAHGHSQKK

Sequences:

>Translated_295_residues
MLEKIQILLQYLLPKYWITYLVGLGASWKGGWITRYAILLFIHIYKIDMKESDKPNLTDYATFNAFFTRKLHKNARPIDT
NPSTLIIPADGIITQIGKINQTNIFRVKNAPYHLDGLLAGHDNIIDYFINGSFVIIYIPPQNCHRIYMPCTGTLREVLYI
PGNLFSVHPKITKNMPNIFSRNERVICLFETDFGYMAQILIGAIIVGSIETTWLGTITPPREGIVRHWRYSSNNTNTDAD
DSIILQKGHEMGLFKLGSTVINLFGDKKVILNNLLQPYDIARIGMPLAHGHSQKK
>Mature_295_residues
MLEKIQILLQYLLPKYWITYLVGLGASWKGGWITRYAILLFIHIYKIDMKESDKPNLTDYATFNAFFTRKLHKNARPIDT
NPSTLIIPADGIITQIGKINQTNIFRVKNAPYHLDGLLAGHDNIIDYFINGSFVIIYIPPQNCHRIYMPCTGTLREVLYI
PGNLFSVHPKITKNMPNIFSRNERVICLFETDFGYMAQILIGAIIVGSIETTWLGTITPPREGIVRHWRYSSNNTNTDAD
DSIILQKGHEMGLFKLGSTVINLFGDKKVILNNLLQPYDIARIGMPLAHGHSQKK

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily

Homologues:

Organism=Homo sapiens, GI13489112, Length=263, Percent_Identity=27.7566539923954, Blast_Score=102, Evalue=4e-22,
Organism=Escherichia coli, GI1790604, Length=288, Percent_Identity=53.8194444444444, Blast_Score=332, Evalue=1e-92,
Organism=Caenorhabditis elegans, GI71980840, Length=261, Percent_Identity=28.735632183908, Blast_Score=113, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI71980843, Length=261, Percent_Identity=28.735632183908, Blast_Score=113, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6321609, Length=259, Percent_Identity=27.027027027027, Blast_Score=94, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6324160, Length=155, Percent_Identity=32.258064516129, Blast_Score=73, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24649526, Length=285, Percent_Identity=25.2631578947368, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24649528, Length=285, Percent_Identity=25.2631578947368, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24649524, Length=285, Percent_Identity=25.2631578947368, Blast_Score=87, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_BLOPB (Q493W4)

Other databases:

- EMBL:   CP000016
- RefSeq:   YP_277592.1
- STRING:   Q493W4
- GeneID:   3563046
- GenomeReviews:   CP000016_GR
- KEGG:   bpn:BPEN_076
- eggNOG:   COG0688
- HOGENOM:   HBG302256
- OMA:   MATVWHG
- ProtClustDB:   PRK00044
- BioCyc:   CBLO291272:BPEN_076-MONOMER
- HAMAP:   MF_00662
- InterPro:   IPR003817
- InterPro:   IPR005221
- PANTHER:   PTHR10067
- TIGRFAMs:   TIGR00163

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 33607; Mature: 33607

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEKIQILLQYLLPKYWITYLVGLGASWKGGWITRYAILLFIHIYKIDMKESDKPNLTDY
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEEEECCCCCCCCCCHH
ATFNAFFTRKLHKNARPIDTNPSTLIIPADGIITQIGKINQTNIFRVKNAPYHLDGLLAG
HHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHCCCCCCEEEEEECCCEEEEEEEEC
HDNIIDYFINGSFVIIYIPPQNCHRIYMPCTGTLREVLYIPGNLFSVHPKITKNMPNIFS
CCCEEEEEECCCEEEEEECCCCCCEEEECCCHHHHHHEECCCCEEEECCHHHCCCCHHHC
RNERVICLFETDFGYMAQILIGAIIVGSIETTWLGTITPPREGIVRHWRYSSNNTNTDAD
CCCEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHEEECCCCCCCCCC
DSIILQKGHEMGLFKLGSTVINLFGDKKVILNNLLQPYDIARIGMPLAHGHSQKK
CCEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHCCCHHCCCCCCC
>Mature Secondary Structure
MLEKIQILLQYLLPKYWITYLVGLGASWKGGWITRYAILLFIHIYKIDMKESDKPNLTDY
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEEEECCCCCCCCCCHH
ATFNAFFTRKLHKNARPIDTNPSTLIIPADGIITQIGKINQTNIFRVKNAPYHLDGLLAG
HHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHCCCCCCEEEEEECCCEEEEEEEEC
HDNIIDYFINGSFVIIYIPPQNCHRIYMPCTGTLREVLYIPGNLFSVHPKITKNMPNIFS
CCCEEEEEECCCEEEEEECCCCCCEEEECCCHHHHHHEECCCCEEEECCHHHCCCCHHHC
RNERVICLFETDFGYMAQILIGAIIVGSIETTWLGTITPPREGIVRHWRYSSNNTNTDAD
CCCEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHEEECCCCCCCCCC
DSIILQKGHEMGLFKLGSTVINLFGDKKVILNNLLQPYDIARIGMPLAHGHSQKK
CCEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA