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The map label for this gene is sigC [H]

Identifier: 68537090

GI number: 68537090

Start: 2325644

End: 2326261

Strand: Direct

Name: sigC [H]

Synonym: jk1995

Alternate gene names: 68537090

Gene position: 2325644-2326261 (Clockwise)

Preceding gene: 161986616

Following gene: 68537091

Centisome position: 94.44

GC content: 69.09

Gene sequence:

>618_bases
ATGACCAGCCAGGCAACCAGCAGTCAGGCGCACGATGCCGCTGTGACCGACCTCGCCCTGCGCGCCGCCAGCGGCGACCG
CCAGGCGTTGACCGAGTTCATTTCCGCCACGCACGACGACGTGTGGCGCCTGCTGGCCCACCTGGCCGATACCGACCGTG
CGGACGACCTCACGCAGGAGACCTACCTGCGCGTACTAAGCGCCCTGCCGCGCTTCGCCGCCCGTTCCACGGCCCGCACC
TGGATCCTCTCCCTCGCCCGCCGCGTGTGGGTCGATAGCGTACGCCACGACATGGCCCGCCCGCGCAGCTCCGCCACGGA
GATTGAGGACGCCACCAGCGCCACCCCCGCCGCCGAAACCACTGGCGGGCAAAGCTGGGCCGAGTGGGTGGACACTCGCG
CCCTCATCGACCAGCTGGAGGAGGAACGCCGCGAGGCTCTGATCCTCACGCAGGTGCTGGGCTACACCTACGCCGAGGCT
GCGAAGATCGCTAACGTCCGCGTGGGCACGATCCGCTCCCGCGTTGCCCGCGCCCGCGCCGACTTGGTTGAGATGGCAGG
CGAGGGACAAGGTGGCGTCACAAAGAAGAACAACAAGCGCCGCTTCGGCGTAGCCTAA

Upstream 100 bases:

>100_bases
CATTATTCGTAGCAGTCATGGGTACCTCCAGATACCTAATAGCTTTGGCTATGCAATCCACCTTGCCAGAATTTCCGCAC
CCGCGTGTTAGGCTTTGTCC

Downstream 100 bases:

>100_bases
CCCGGGTGCAGCCAGGCGCGACGGCGCGTTTAAGGAACAACGGGGGCGAAGGGCTAGGCTGGTTCACATGAGCACGAGCG
CTGAAACCCCCGCTATCGCC

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MTSQATSSQAHDAAVTDLALRAASGDRQALTEFISATHDDVWRLLAHLADTDRADDLTQETYLRVLSALPRFAARSTART
WILSLARRVWVDSVRHDMARPRSSATEIEDATSATPAAETTGGQSWAEWVDTRALIDQLEEERREALILTQVLGYTYAEA
AKIANVRVGTIRSRVARARADLVEMAGEGQGGVTKKNNKRRFGVA

Sequences:

>Translated_205_residues
MTSQATSSQAHDAAVTDLALRAASGDRQALTEFISATHDDVWRLLAHLADTDRADDLTQETYLRVLSALPRFAARSTART
WILSLARRVWVDSVRHDMARPRSSATEIEDATSATPAAETTGGQSWAEWVDTRALIDQLEEERREALILTQVLGYTYAEA
AKIANVRVGTIRSRVARARADLVEMAGEGQGGVTKKNNKRRFGVA
>Mature_204_residues
TSQATSSQAHDAAVTDLALRAASGDRQALTEFISATHDDVWRLLAHLADTDRADDLTQETYLRVLSALPRFAARSTARTW
ILSLARRVWVDSVRHDMARPRSSATEIEDATSATPAAETTGGQSWAEWVDTRALIDQLEEERREALILTQVLGYTYAEAA
KIANVRVGTIRSRVARARADLVEMAGEGQGGVTKKNNKRRFGVA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22507; Mature: 22376

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSQATSSQAHDAAVTDLALRAASGDRQALTEFISATHDDVWRLLAHLADTDRADDLTQE
CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHH
TYLRVLSALPRFAARSTARTWILSLARRVWVDSVRHDMARPRSSATEIEDATSATPAAET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCC
TGGQSWAEWVDTRALIDQLEEERREALILTQVLGYTYAEAAKIANVRVGTIRSRVARARA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLVEMAGEGQGGVTKKNNKRRFGVA
HHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TSQATSSQAHDAAVTDLALRAASGDRQALTEFISATHDDVWRLLAHLADTDRADDLTQE
CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHH
TYLRVLSALPRFAARSTARTWILSLARRVWVDSVRHDMARPRSSATEIEDATSATPAAET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCC
TGGQSWAEWVDTRALIDQLEEERREALILTQVLGYTYAEAAKIANVRVGTIRSRVARARA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLVEMAGEGQGGVTKKNNKRRFGVA
HHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]