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The map label for this gene is ramB

Identifier: 68537028

GI number: 68537028

Start: 2254090

End: 2255595

Strand: Direct

Name: ramB

Synonym: jk1934

Alternate gene names: NA

Gene position: 2254090-2255595 (Clockwise)

Preceding gene: 68537027

Following gene: 68537031

Centisome position: 91.54

GC content: 64.41

Gene sequence:

>1506_bases
ATGGGAAAACCGACTGAACGCACATCTGCACGCGCCACTGAGAGCAATACCGAGCGCCCCTTCGTCGGCTCCCGCCTTCG
CCAGCTACGCAAGGAACGCGGAATCTCCCAAGCCCGCCTCGCAGAGATCCTGGACCTCTCCGCCAGCTACGTGAACCAGA
TCGAGCACGACGGGCGCCCGCTGACCGCCGCCGTGTTAGAGCGCATTACCGCCGCCTTCGGCGTCGACCCAACCTTCTTC
GCCGACCAAGACTCCACTCGCCTGCTGGCGGAAGTCCAGGACGTCACCCTGGACCCGGAGATCAGCCCCACCCCGGCGGA
CGTCACCGAGCTCGCAGCACTGGTGAAGAACCACCCGGACCTGGCCCGCGCCTTCGTGGACCTCCACTCCCGCTACCGGA
ACGTCTCGGATACCCTCTCGCTGCTCACCGAGGAGCGCGTGCAGGGCTCCGCCATCCTCTCCATCACGCCCAAGGGTGAG
CTCTTCGGCCGGGCCTCCGGGCCAGAGGCGTTCTCAATGCCACACGATGAAGTCCGCGACTTCTTCTACGCACGACAGAA
CTACATCGATGTTCTGGATGTAGCGGCGGAGAAGTTGGCGTCCAAAATAAACATCGGGGCGAACCAAATACACCACACAG
AACAAATCATCGCCGAACGGCTACAACAGGTGCACCAAGTGCAGGTGATCTACTCGCGCGACCTGGGTGATACACAGCAC
AAGTTCGACCCAAAGCGAAAGACGCTCCACGTGTCGTCGAAGATGCGCCCCGGGCAGATCGCATTCCGGCTGGCCACCGA
GCTGGCATTCCTAGAGGCCGGAACGACCATCGACTCGCTGGTGGAGCTGGGGCACTTCCAGTCCGAAGAATCCCGCGCGC
TCGCCCGGCGCGGCCTGGCCAGCTACTATGCCGCCGCGCTGCTACTGCCCTACCAACAGTTCCACAGCTCCGCGGAGGAA
TCGCGCTACGACCTGGAGTTCCTTATGCGCGAATACGGCGTGGGCTACGAGACGGTCTGCCACCGCCTCTCCAGTCTGCA
GCGCCCCAGCCTGCGCGGCGTTCCCTGGACCTTCGTGCGCGTGGACCGTGCGGGCAACATGTCCAAGCGCCAGTCGGCGA
CGGGGCTGCACCTTTCCAACTCCGGCGGCACGTGCCCGCTGTGGAATGTGTACGAAACGTTTAGCTATCCCGGCAAGATC
ATGCGGCAGATCGCGCAAATGCCAGACGGGAGAACCTACCTGTGGATCGCGCGCACCGTGAACCACCACCGCGCGGCATG
GGGCCAGCCGGGGAAGATGTTCGCCATCGGTTTGGGCTGCGAGCTGCGGCACGCCGACCGGACGGTGTATTCGGACGGTC
TGGACTTAGAGGACACGTCCGCGGCAGTGCCGATCGGCTCCGGATGCCGACTGTGCCCGCGCGATAACTGCCCGCAGCGT
GCGTTCCCGCCGATCCACCGCTCGCTGGAGATCGACCCGCACCGTTCGAGTGTGTCGCCCTACTAG

Upstream 100 bases:

>100_bases
TGGCCGGACTCTTTCTCTTTCCTGACAAGCAGTTACTACGGATGAAGCCAATGGCAACTTGGCCCATGCCCCAAAGCCTC
CGAATATACTGGTGAGCACC

Downstream 100 bases:

>100_bases
TTCGCCCTACTAGCGCTAGTCGCCGTCGAAAAGCCCGACGATCTGCCTGCGCTGCAGTTCGCGACGGTTGTATGTGGCCT
CGCGCACCGATTCGTCGGTA

Product: putative transcriptional regulator RamB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 501; Mature: 500

Protein sequence:

>501_residues
MGKPTERTSARATESNTERPFVGSRLRQLRKERGISQARLAEILDLSASYVNQIEHDGRPLTAAVLERITAAFGVDPTFF
ADQDSTRLLAEVQDVTLDPEISPTPADVTELAALVKNHPDLARAFVDLHSRYRNVSDTLSLLTEERVQGSAILSITPKGE
LFGRASGPEAFSMPHDEVRDFFYARQNYIDVLDVAAEKLASKINIGANQIHHTEQIIAERLQQVHQVQVIYSRDLGDTQH
KFDPKRKTLHVSSKMRPGQIAFRLATELAFLEAGTTIDSLVELGHFQSEESRALARRGLASYYAAALLLPYQQFHSSAEE
SRYDLEFLMREYGVGYETVCHRLSSLQRPSLRGVPWTFVRVDRAGNMSKRQSATGLHLSNSGGTCPLWNVYETFSYPGKI
MRQIAQMPDGRTYLWIARTVNHHRAAWGQPGKMFAIGLGCELRHADRTVYSDGLDLEDTSAAVPIGSGCRLCPRDNCPQR
AFPPIHRSLEIDPHRSSVSPY

Sequences:

>Translated_501_residues
MGKPTERTSARATESNTERPFVGSRLRQLRKERGISQARLAEILDLSASYVNQIEHDGRPLTAAVLERITAAFGVDPTFF
ADQDSTRLLAEVQDVTLDPEISPTPADVTELAALVKNHPDLARAFVDLHSRYRNVSDTLSLLTEERVQGSAILSITPKGE
LFGRASGPEAFSMPHDEVRDFFYARQNYIDVLDVAAEKLASKINIGANQIHHTEQIIAERLQQVHQVQVIYSRDLGDTQH
KFDPKRKTLHVSSKMRPGQIAFRLATELAFLEAGTTIDSLVELGHFQSEESRALARRGLASYYAAALLLPYQQFHSSAEE
SRYDLEFLMREYGVGYETVCHRLSSLQRPSLRGVPWTFVRVDRAGNMSKRQSATGLHLSNSGGTCPLWNVYETFSYPGKI
MRQIAQMPDGRTYLWIARTVNHHRAAWGQPGKMFAIGLGCELRHADRTVYSDGLDLEDTSAAVPIGSGCRLCPRDNCPQR
AFPPIHRSLEIDPHRSSVSPY
>Mature_500_residues
GKPTERTSARATESNTERPFVGSRLRQLRKERGISQARLAEILDLSASYVNQIEHDGRPLTAAVLERITAAFGVDPTFFA
DQDSTRLLAEVQDVTLDPEISPTPADVTELAALVKNHPDLARAFVDLHSRYRNVSDTLSLLTEERVQGSAILSITPKGEL
FGRASGPEAFSMPHDEVRDFFYARQNYIDVLDVAAEKLASKINIGANQIHHTEQIIAERLQQVHQVQVIYSRDLGDTQHK
FDPKRKTLHVSSKMRPGQIAFRLATELAFLEAGTTIDSLVELGHFQSEESRALARRGLASYYAAALLLPYQQFHSSAEES
RYDLEFLMREYGVGYETVCHRLSSLQRPSLRGVPWTFVRVDRAGNMSKRQSATGLHLSNSGGTCPLWNVYETFSYPGKIM
RQIAQMPDGRTYLWIARTVNHHRAAWGQPGKMFAIGLGCELRHADRTVYSDGLDLEDTSAAVPIGSGCRLCPRDNCPQRA
FPPIHRSLEIDPHRSSVSPY

Specific function: Unknown

COG id: COG3800

COG function: function code R; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018653
- InterPro:   IPR010359
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF09856 DUF2083; PF06114 DUF955; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 56057; Mature: 55926

Theoretical pI: Translated: 7.31; Mature: 7.31

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKPTERTSARATESNTERPFVGSRLRQLRKERGISQARLAEILDLSASYVNQIEHDGRP
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC
LTAAVLERITAAFGVDPTFFADQDSTRLLAEVQDVTLDPEISPTPADVTELAALVKNHPD
HHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHH
LARAFVDLHSRYRNVSDTLSLLTEERVQGSAILSITPKGELFGRASGPEAFSMPHDEVRD
HHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHH
FFYARQNYIDVLDVAAEKLASKINIGANQIHHTEQIIAERLQQVHQVQVIYSRDLGDTQH
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
KFDPKRKTLHVSSKMRPGQIAFRLATELAFLEAGTTIDSLVELGHFQSEESRALARRGLA
HCCCCHHEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHH
SYYAAALLLPYQQFHSSAEESRYDLEFLMREYGVGYETVCHRLSSLQRPSLRGVPWTFVR
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCEEEEE
VDRAGNMSKRQSATGLHLSNSGGTCPLWNVYETFSYPGKIMRQIAQMPDGRTYLWIARTV
EECCCCCHHHHCCCCEEECCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCEEEEEEEHH
NHHRAAWGQPGKMFAIGLGCELRHADRTVYSDGLDLEDTSAAVPIGSGCRLCPRDNCPQR
CHHHHCCCCCCCEEEEECCCEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AFPPIHRSLEIDPHRSSVSPY
CCCCHHCCEECCCCCCCCCCC
>Mature Secondary Structure 
GKPTERTSARATESNTERPFVGSRLRQLRKERGISQARLAEILDLSASYVNQIEHDGRP
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC
LTAAVLERITAAFGVDPTFFADQDSTRLLAEVQDVTLDPEISPTPADVTELAALVKNHPD
HHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHH
LARAFVDLHSRYRNVSDTLSLLTEERVQGSAILSITPKGELFGRASGPEAFSMPHDEVRD
HHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHH
FFYARQNYIDVLDVAAEKLASKINIGANQIHHTEQIIAERLQQVHQVQVIYSRDLGDTQH
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
KFDPKRKTLHVSSKMRPGQIAFRLATELAFLEAGTTIDSLVELGHFQSEESRALARRGLA
HCCCCHHEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHH
SYYAAALLLPYQQFHSSAEESRYDLEFLMREYGVGYETVCHRLSSLQRPSLRGVPWTFVR
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCEEEEE
VDRAGNMSKRQSATGLHLSNSGGTCPLWNVYETFSYPGKIMRQIAQMPDGRTYLWIARTV
EECCCCCHHHHCCCCEEECCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCEEEEEEEHH
NHHRAAWGQPGKMFAIGLGCELRHADRTVYSDGLDLEDTSAAVPIGSGCRLCPRDNCPQR
CHHHHCCCCCCCEEEEECCCEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AFPPIHRSLEIDPHRSSVSPY
CCCCHHCCEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]