Click here to switch to the map view.

The map label for this gene is tnp3513b [H]

Identifier: 68536489

GI number: 68536489

Start: 1663676

End: 1664539

Strand: Direct

Name: tnp3513b [H]

Synonym: jk1403

Alternate gene names: 68536489

Gene position: 1663676-1664539 (Clockwise)

Preceding gene: 68536488

Following gene: 68536490

Centisome position: 67.56

GC content: 53.7

Gene sequence:

>864_bases
GTGACTATGATGGCCCGACTTCTACGCGTGAGCCGTGCCGGCTACTACGGGTGGAAAAAGCGCCGAAACCAGAATTATCC
TTTATCTACTCCACGAGGATTTCGTGACCAGATTGCCGACGACGTCAGAGAAATCTTCGCCAAGCATAATGGTTTCGCCG
GCGTACGTACCATCGCCACAGAACTAGGCACGCGTGGTATTACAGCCACGTTGTATGCCGTGCGTAAAACCATGCGGACG
CTAGGGCTAGTAACTAAGTATCGCCGAGCGTTTAAACGCACGACCATTGCCGATGCCAACGCCCGAGACCGCAGCGATCT
TGTACGACGCAATTTCACTCCACCAGTTCCAACAACTTACTTGTGCGGTGATATTACCTACCTTCGTACCGGGCAGGGTT
GGATGTATTTAGCGACAGTGATTGATTTATCAACCAGGATGGTCACAGGCTGGCAGGTAGCCGATCGTATGACCAGCCAG
CTGGTCATTGACGCACTGGACATGGCTCATCGCAGTGGCTATGTCGCAGGTAATGCCATATTTCATTCCGATCGCGGCGC
CCAGTACACCAGTGCGGCATTAAGTCAGTGGGCCGAGAACCATGATGTTCGCTTATCAGTCGGCGAGGTCGGCGTGTGCT
GGGATAACGCTGTGGCGGAATCGTTCTTTTCCACCCTGAAACTGCATTTACTCTACGAGCGGAAACAGTTCGTTTCCAAA
CTCGAAGCGCGAACCAGTGTAGGCGAATGGATCGAGGCCTACTACAACCGCCGACGCATCCACACCAGCACCGAAGAAAT
CCCTAAGAAAGCAATGGACGACTTCCTGACCACACCTGTGACTACCGCCGCGCAAGCGGCCTAA

Upstream 100 bases:

>100_bases
ACGAGTTTTTAAAAAAAGCGGCCGCCTTCTTCGCCAAGGGCATGTAGACGAGCATTCCTTTGCCCTGATCCGTCATTTTG
AAGAAGAAGGCACATTTACG

Downstream 100 bases:

>100_bases
CCAACAAACTAAAGAGTTTCACCGTCAACAAAACTTGACACAGCCCAGAAGGCATGTTAGAGTTTGGGGCATGTCGAGTC
CCGAATCAGACAGGTCAGGG

Product: transposase for IS3513

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MTMMARLLRVSRAGYYGWKKRRNQNYPLSTPRGFRDQIADDVREIFAKHNGFAGVRTIATELGTRGITATLYAVRKTMRT
LGLVTKYRRAFKRTTIADANARDRSDLVRRNFTPPVPTTYLCGDITYLRTGQGWMYLATVIDLSTRMVTGWQVADRMTSQ
LVIDALDMAHRSGYVAGNAIFHSDRGAQYTSAALSQWAENHDVRLSVGEVGVCWDNAVAESFFSTLKLHLLYERKQFVSK
LEARTSVGEWIEAYYNRRRIHTSTEEIPKKAMDDFLTTPVTTAAQAA

Sequences:

>Translated_287_residues
MTMMARLLRVSRAGYYGWKKRRNQNYPLSTPRGFRDQIADDVREIFAKHNGFAGVRTIATELGTRGITATLYAVRKTMRT
LGLVTKYRRAFKRTTIADANARDRSDLVRRNFTPPVPTTYLCGDITYLRTGQGWMYLATVIDLSTRMVTGWQVADRMTSQ
LVIDALDMAHRSGYVAGNAIFHSDRGAQYTSAALSQWAENHDVRLSVGEVGVCWDNAVAESFFSTLKLHLLYERKQFVSK
LEARTSVGEWIEAYYNRRRIHTSTEEIPKKAMDDFLTTPVTTAAQAA
>Mature_286_residues
TMMARLLRVSRAGYYGWKKRRNQNYPLSTPRGFRDQIADDVREIFAKHNGFAGVRTIATELGTRGITATLYAVRKTMRTL
GLVTKYRRAFKRTTIADANARDRSDLVRRNFTPPVPTTYLCGDITYLRTGQGWMYLATVIDLSTRMVTGWQVADRMTSQL
VIDALDMAHRSGYVAGNAIFHSDRGAQYTSAALSQWAENHDVRLSVGEVGVCWDNAVAESFFSTLKLHLLYERKQFVSKL
EARTSVGEWIEAYYNRRRIHTSTEEIPKKAMDDFLTTPVTTAAQAA

Specific function: Involved in the transposition of the insertion sequence IS3 [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=193, Percent_Identity=35.2331606217617, Blast_Score=123, Evalue=2e-28,
Organism=Escherichia coli, GI1788405, Length=274, Percent_Identity=36.4963503649635, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1787263, Length=274, Percent_Identity=36.4963503649635, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1786753, Length=274, Percent_Identity=36.4963503649635, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1786570, Length=274, Percent_Identity=36.4963503649635, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1786490, Length=274, Percent_Identity=36.4963503649635, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1789981, Length=233, Percent_Identity=29.1845493562232, Blast_Score=97, Evalue=8e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 32556; Mature: 32424

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMMARLLRVSRAGYYGWKKRRNQNYPLSTPRGFRDQIADDVREIFAKHNGFAGVRTIAT
CHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
ELGTRGITATLYAVRKTMRTLGLVTKYRRAFKRTTIADANARDRSDLVRRNFTPPVPTTY
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCE
LCGDITYLRTGQGWMYLATVIDLSTRMVTGWQVADRMTSQLVIDALDMAHRSGYVAGNAI
ECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCEE
FHSDRGAQYTSAALSQWAENHDVRLSVGEVGVCWDNAVAESFFSTLKLHLLYERKQFVSK
EECCCCCHHHHHHHHHHHCCCCEEEEECCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEARTSVGEWIEAYYNRRRIHTSTEEIPKKAMDDFLTTPVTTAAQAA
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHCCC
>Mature Secondary Structure 
TMMARLLRVSRAGYYGWKKRRNQNYPLSTPRGFRDQIADDVREIFAKHNGFAGVRTIAT
HHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
ELGTRGITATLYAVRKTMRTLGLVTKYRRAFKRTTIADANARDRSDLVRRNFTPPVPTTY
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCE
LCGDITYLRTGQGWMYLATVIDLSTRMVTGWQVADRMTSQLVIDALDMAHRSGYVAGNAI
ECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCEE
FHSDRGAQYTSAALSQWAENHDVRLSVGEVGVCWDNAVAESFFSTLKLHLLYERKQFVSK
EECCCCCHHHHHHHHHHHCCCCEEEEECCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEARTSVGEWIEAYYNRRRIHTSTEEIPKKAMDDFLTTPVTTAAQAA
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2987844; 9278503 [H]