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The map label for this gene is cspB [C]

Identifier: 68535487

GI number: 68535487

Start: 502038

End: 502421

Strand: Direct

Name: cspB [C]

Synonym: jk0417

Alternate gene names: 68535487

Gene position: 502038-502421 (Clockwise)

Preceding gene: 68535485

Following gene: 68535490

Centisome position: 20.39

GC content: 61.72

Gene sequence:

>384_bases
ATGCCAACCGGAAAAGTGAAGTGGTACGACGCTGATCGCGGCTACGGCTTCGTCAGCAACCCTGGGGACGAGGACGTCTA
CGTCGGTTCCCAGGTGCTGCCCGACGGCGTCACCGAACTGGTCAAGGGCCAGCGTATCGAGTACGAGTTCATCGCCGGTC
GTCGTGGCCCGCAGGTACACACTATGACGGTGTTGGACAACGGCCCCCGCCGTGCACAGCACAAGTACAACCCAGAGCAG
CTTCACCAGATGGTGCAGGATACGATCACGCTGCTAGATAGCAGCGTGTTGCCAGTACTGCAGTCTGGGCGTCGGCCGGA
GCACAAGGAGGCCCGCCAGGTGGCAGAGATCCTTCGTACCATCGCGCGCGAGCTCGATAGCTAG

Upstream 100 bases:

>100_bases
GACGTCTGTGACCTGTGTGATTTGTTGACGGGATTTGCCCTACCTCGGCATTCTCGCTAACCTAATGCATTCTATTGACT
TCAAAGAATAGGGTGATCCC

Downstream 100 bases:

>100_bases
ACCTCGATAGCCGAATCCCGGACTCCACTAAAACAACCCCCTCGCAACCCCCTCGAACTTGAGGGAGCTACTGGGCGATC
TCGATCGACCAGATGGTTGC

Product: putative cold shock protein

Products: NA

Alternate protein names: Cold-Shock Domain Family Protein; Cold Shock Protein B; Cold Shock-Like Protein B CspB; Cold Shock Protein CspB; Cold Shock Protein B CspB; Cold Shock-Like Protein B

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MPTGKVKWYDADRGYGFVSNPGDEDVYVGSQVLPDGVTELVKGQRIEYEFIAGRRGPQVHTMTVLDNGPRRAQHKYNPEQ
LHQMVQDTITLLDSSVLPVLQSGRRPEHKEARQVAEILRTIARELDS

Sequences:

>Translated_127_residues
MPTGKVKWYDADRGYGFVSNPGDEDVYVGSQVLPDGVTELVKGQRIEYEFIAGRRGPQVHTMTVLDNGPRRAQHKYNPEQ
LHQMVQDTITLLDSSVLPVLQSGRRPEHKEARQVAEILRTIARELDS
>Mature_126_residues
PTGKVKWYDADRGYGFVSNPGDEDVYVGSQVLPDGVTELVKGQRIEYEFIAGRRGPQVHTMTVLDNGPRRAQHKYNPEQL
HQMVQDTITLLDSSVLPVLQSGRRPEHKEARQVAEILRTIARELDS

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14356; Mature: 14225

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTGKVKWYDADRGYGFVSNPGDEDVYVGSQVLPDGVTELVKGQRIEYEFIAGRRGPQVH
CCCCCEEEEECCCCCCCCCCCCCCCEEECCHHCCHHHHHHHCCCCCCEEEECCCCCCCEE
TMTVLDNGPRRAQHKYNPEQLHQMVQDTITLLDSSVLPVLQSGRRPEHKEARQVAEILRT
EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
IARELDS
HHHHHCC
>Mature Secondary Structure 
PTGKVKWYDADRGYGFVSNPGDEDVYVGSQVLPDGVTELVKGQRIEYEFIAGRRGPQVH
CCCCEEEEECCCCCCCCCCCCCCCEEECCHHCCHHHHHHHCCCCCCEEEECCCCCCCEE
TMTVLDNGPRRAQHKYNPEQLHQMVQDTITLLDSSVLPVLQSGRRPEHKEARQVAEILRT
EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
IARELDS
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA