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The map label for this gene is ybbD [H]

Identifier: 68535234

GI number: 68535234

Start: 211490

End: 212695

Strand: Direct

Name: ybbD [H]

Synonym: jk0169

Alternate gene names: 68535234

Gene position: 211490-212695 (Clockwise)

Preceding gene: 68535230

Following gene: 68535235

Centisome position: 8.59

GC content: 64.59

Gene sequence:

>1206_bases
ATGCCCCGTAGACACGTTGCCGCTGGCGCTTTAGGTTTCGCTCTTGTTGTTGCCTCTAGCGCTTGTTCCTTATCGACGCC
CACTGACCAGCCAGCCGATACTTCCGCATCCTCGGCCACTTCCGCTGCGCCCGGTTCCGAAAGCTCCGGTGCCGCCGAAT
CCAGCACACCCCCAGCGGAGAACCGGCCGGCCTGTGCCCGGGTGGAGGGTAAGACCCCTAGGGAGATGGCTGGCCGGATG
CTTGCTGTGGGCGTCACAACCTACGAATCAGCAGAACAAGCCGTCGACGAAGGTGTGCGCCACCTTTTCATTGGCTCGCA
GACCGACAAGTCCATTTTGAATGGTCAGGGAGACCCTGCGCGTAGCCTGGCGGCGCTCGAGAAGCGCGCGGGCGAACCGC
TGACGGTGAGCGTGGACGAGGAAGGCGGTCTGGTGCAGCGCCTTTCCGAGATCATTGGTGAGCTGCCGAGTGCGAAGCAG
ATGGCGGAGACGATGAGCCCCGAGCAGGTGCGCGACCTCATGGCCGAGCACGGTAAGAAGGTCCGCGACTTGGGAATCAC
TGTGGACTTCGCGCCGGTGGTGGATCTGGCTGGTGGTCAGGAGGTTTCTGACAACGCGATCGGCTCACGTTCCTTCAGTG
CCGACCCGAAGGTGGCGGCGGATTACGCACGCGCCTACTCGGAGGGCTTGCAGCAGGCGGGCGTGACCCCGGTGCTGAAG
CACTTCCCGGGCCACGGGCACGCCACGGGCGACTCGCACATGGGATCCGTGACCACCCCGCCGCTTGAGCAAATGCAAGC
CAACGACCTGCTGCCCTTCCGTGAACTTATCGACGTTGAAGGCATGGCCGTGATGGTCGGCCATGTGGAGGTGCCGGGGT
TGGGTGAGCCTTTGCCATCCTCGGTGAACCCTGCGGCCTACAAGCTGTTGCGGGAGGGCGGTTATGGCCCGAGGCATGAC
GCCCCAGGTTTCGACGGCGTGATTTACACCGACGACCTGACGGGCATGAAGGCCGTGACGGATCGCTACCCCGGCCCGGA
GGCAGCCGTGGCGGCGCTGGCGGCTGGGGCGGACGTGGCGCTTGCCGCAGCGGGGGCAGTGGAGATCCCCGATGTAGTGG
AGGCCATCCGCGTGGCGATCGACGACGGGCGGATCCCTGAGGATCAGGTGCGCGATTCTGTGAATCGTACCTGTGTAACC
GAGTAA

Upstream 100 bases:

>100_bases
TTGCTGGGCTTGTTCTGCCTGCTCGGTCATGTGTATCGCTCCTCGGTGGGCACTGCACGATTGGTGCACTGCTCGTTGCG
TTTGTTACTACGTTAATACT

Downstream 100 bases:

>100_bases
AAGAATTCCCTGATCGGGGGGATTCGCGATACACTAACCTGCGTGAATTCTCAGGATCAGACTAACCGGAGCCGCCGGCC
CGTCAAGCCACGCAAGCGCC

Product: putative beta-glucosidase-related glycosidase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MPRRHVAAGALGFALVVASSACSLSTPTDQPADTSASSATSAAPGSESSGAAESSTPPAENRPACARVEGKTPREMAGRM
LAVGVTTYESAEQAVDEGVRHLFIGSQTDKSILNGQGDPARSLAALEKRAGEPLTVSVDEEGGLVQRLSEIIGELPSAKQ
MAETMSPEQVRDLMAEHGKKVRDLGITVDFAPVVDLAGGQEVSDNAIGSRSFSADPKVAADYARAYSEGLQQAGVTPVLK
HFPGHGHATGDSHMGSVTTPPLEQMQANDLLPFRELIDVEGMAVMVGHVEVPGLGEPLPSSVNPAAYKLLREGGYGPRHD
APGFDGVIYTDDLTGMKAVTDRYPGPEAAVAALAAGADVALAAAGAVEIPDVVEAIRVAIDDGRIPEDQVRDSVNRTCVT
E

Sequences:

>Translated_401_residues
MPRRHVAAGALGFALVVASSACSLSTPTDQPADTSASSATSAAPGSESSGAAESSTPPAENRPACARVEGKTPREMAGRM
LAVGVTTYESAEQAVDEGVRHLFIGSQTDKSILNGQGDPARSLAALEKRAGEPLTVSVDEEGGLVQRLSEIIGELPSAKQ
MAETMSPEQVRDLMAEHGKKVRDLGITVDFAPVVDLAGGQEVSDNAIGSRSFSADPKVAADYARAYSEGLQQAGVTPVLK
HFPGHGHATGDSHMGSVTTPPLEQMQANDLLPFRELIDVEGMAVMVGHVEVPGLGEPLPSSVNPAAYKLLREGGYGPRHD
APGFDGVIYTDDLTGMKAVTDRYPGPEAAVAALAAGADVALAAAGAVEIPDVVEAIRVAIDDGRIPEDQVRDSVNRTCVT
E
>Mature_400_residues
PRRHVAAGALGFALVVASSACSLSTPTDQPADTSASSATSAAPGSESSGAAESSTPPAENRPACARVEGKTPREMAGRML
AVGVTTYESAEQAVDEGVRHLFIGSQTDKSILNGQGDPARSLAALEKRAGEPLTVSVDEEGGLVQRLSEIIGELPSAKQM
AETMSPEQVRDLMAEHGKKVRDLGITVDFAPVVDLAGGQEVSDNAIGSRSFSADPKVAADYARAYSEGLQQAGVTPVLKH
FPGHGHATGDSHMGSVTTPPLEQMQANDLLPFRELIDVEGMAVMVGHVEVPGLGEPLPSSVNPAAYKLLREGGYGPRHDA
PGFDGVIYTDDLTGMKAVTDRYPGPEAAVAALAAGADVALAAAGAVEIPDVVEAIRVAIDDGRIPEDQVRDSVNRTCVTE

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=254, Percent_Identity=35.4330708661417, Blast_Score=109, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: 3.2.1.21

Molecular weight: Translated: 41493; Mature: 41361

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRRHVAAGALGFALVVASSACSLSTPTDQPADTSASSATSAAPGSESSGAAESSTPPAE
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NRPACARVEGKTPREMAGRMLAVGVTTYESAEQAVDEGVRHLFIGSQTDKSILNGQGDPA
CCCCEEECCCCCHHHHHCCEEEEEEHHHHHHHHHHHHHHHEEECCCCCCHHHHCCCCCHH
RSLAALEKRAGEPLTVSVDEEGGLVQRLSEIIGELPSAKQMAETMSPEQVRDLMAEHGKK
HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCH
VRDLGITVDFAPVVDLAGGQEVSDNAIGSRSFSADPKVAADYARAYSEGLQQAGVTPVLK
HHHHCCEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHH
HFPGHGHATGDSHMGSVTTPPLEQMQANDLLPFRELIDVEGMAVMVGHVEVPGLGEPLPS
HCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHCCCCEEEEEEEEECCCCCCCCCC
SVNPAAYKLLREGGYGPRHDAPGFDGVIYTDDLTGMKAVTDRYPGPEAAVAALAAGADVA
CCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCHHHHHHCCCCHHHHHHHHHCCCCHH
LAAAGAVEIPDVVEAIRVAIDDGRIPEDQVRDSVNRTCVTE
HHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PRRHVAAGALGFALVVASSACSLSTPTDQPADTSASSATSAAPGSESSGAAESSTPPAE
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NRPACARVEGKTPREMAGRMLAVGVTTYESAEQAVDEGVRHLFIGSQTDKSILNGQGDPA
CCCCEEECCCCCHHHHHCCEEEEEEHHHHHHHHHHHHHHHEEECCCCCCHHHHCCCCCHH
RSLAALEKRAGEPLTVSVDEEGGLVQRLSEIIGELPSAKQMAETMSPEQVRDLMAEHGKK
HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCH
VRDLGITVDFAPVVDLAGGQEVSDNAIGSRSFSADPKVAADYARAYSEGLQQAGVTPVLK
HHHHCCEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHH
HFPGHGHATGDSHMGSVTTPPLEQMQANDLLPFRELIDVEGMAVMVGHVEVPGLGEPLPS
HCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHCCCCEEEEEEEEECCCCCCCCCC
SVNPAAYKLLREGGYGPRHDAPGFDGVIYTDDLTGMKAVTDRYPGPEAAVAALAAGADVA
CCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCHHHHHHCCCCHHHHHHHHHCCCCHH
LAAAGAVEIPDVVEAIRVAIDDGRIPEDQVRDSVNRTCVTE
HHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]