Click here to switch to the map view.

The map label for this gene is 68535066

Identifier: 68535066

GI number: 68535066

Start: 4863

End: 5390

Strand: Direct

Name: 68535066

Synonym: jk0004

Alternate gene names: NA

Gene position: 4863-5390 (Clockwise)

Preceding gene: 68535065

Following gene: 68535067

Centisome position: 0.2

GC content: 62.31

Gene sequence:

>528_bases
ATGGCGACTGACCCAGTAGCCCAAGCCCTCGCTGCCATGAAGAAGGCCGGTGGTTCCCCGCAGGCTGAGTTGCCGCTGGT
GGCGTCACCAAAAAAGAACAAGAAGACAACGTTCCGCAAGGCGACCAGGTACAAGACCCGCATGGATGGGCGGCTCGATC
GTAGTTACCGCGACCCGAAGCGTTTCGGTGCGCTGATTGGGAGGGAGATCAAGCGGCAGGGCTGGCAGCAGCGGGTGAGC
GTTGCGCGGATCATGAACGCCTGGCCGGAGCTGGTGGGTGACAAGATTGCCGAACACACTCGCCCGGTGCGGTATGAGGA
GGAAGCGCAGATCCTGGTGATCGAGTGCGATTCCACCCCGTGGACCACTCAGCTGCGCTACATGCAGACCGTGATCCTGC
AGGCCATAGCCAAGCGTGCCGGTGAGGACGTGGTGGCTCAATTGCGGATCGAAGGACCAAACATCCGCCGGCCGAAATAC
GGCAAGCTGCGCGTGCAAGGGCGCGGACCGCGAGACGACTTCGGATGA

Upstream 100 bases:

>100_bases
CCAGAGGCTCTGCGGGATGTGGCGAAGATCTACACTATTGATGAACTCAAGAATTCCGCGTTAAGCACGGCGGAACGCGC
TGTAAAGGATGGCGAGGCTG

Downstream 100 bases:

>100_bases
TCTAAACACAGTTCAAATAGCTCAAACGGCCTGTCCAATGGCACCTTTAGGCCCGCGACGCGCTAGAATGGGGTGGTTAT
TTACGCGCGAGAAAAGGAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MATDPVAQALAAMKKAGGSPQAELPLVASPKKNKKTTFRKATRYKTRMDGRLDRSYRDPKRFGALIGREIKRQGWQQRVS
VARIMNAWPELVGDKIAEHTRPVRYEEEAQILVIECDSTPWTTQLRYMQTVILQAIAKRAGEDVVAQLRIEGPNIRRPKY
GKLRVQGRGPRDDFG

Sequences:

>Translated_175_residues
MATDPVAQALAAMKKAGGSPQAELPLVASPKKNKKTTFRKATRYKTRMDGRLDRSYRDPKRFGALIGREIKRQGWQQRVS
VARIMNAWPELVGDKIAEHTRPVRYEEEAQILVIECDSTPWTTQLRYMQTVILQAIAKRAGEDVVAQLRIEGPNIRRPKY
GKLRVQGRGPRDDFG
>Mature_174_residues
ATDPVAQALAAMKKAGGSPQAELPLVASPKKNKKTTFRKATRYKTRMDGRLDRSYRDPKRFGALIGREIKRQGWQQRVSV
ARIMNAWPELVGDKIAEHTRPVRYEEEAQILVIECDSTPWTTQLRYMQTVILQAIAKRAGEDVVAQLRIEGPNIRRPKYG
KLRVQGRGPRDDFG

Specific function: Unknown

COG id: COG5512

COG function: function code R; Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0232 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007922
- InterPro:   IPR023007 [H]

Pfam domain/function: PF05258 DUF721 [H]

EC number: NA

Molecular weight: Translated: 19886; Mature: 19755

Theoretical pI: Translated: 11.03; Mature: 11.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATDPVAQALAAMKKAGGSPQAELPLVASPKKNKKTTFRKATRYKTRMDGRLDRSYRDPK
CCCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHH
RFGALIGREIKRQGWQQRVSVARIMNAWPELVGDKIAEHTRPVRYEEEAQILVIECDSTP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCC
WTTQLRYMQTVILQAIAKRAGEDVVAQLRIEGPNIRRPKYGKLRVQGRGPRDDFG
CHHHHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCCCCCCCEEEECCCCCCCCCC
>Mature Secondary Structure 
ATDPVAQALAAMKKAGGSPQAELPLVASPKKNKKTTFRKATRYKTRMDGRLDRSYRDPK
CCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHH
RFGALIGREIKRQGWQQRVSVARIMNAWPELVGDKIAEHTRPVRYEEEAQILVIECDSTP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCC
WTTQLRYMQTVILQAIAKRAGEDVVAQLRIEGPNIRRPKYGKLRVQGRGPRDDFG
CHHHHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCCCCCCCEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA