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The map label for this gene is rnaSA3 [H]

Identifier: 77761170

GI number: 77761170

Start: 2229931

End: 2230380

Strand: Reverse

Name: rnaSA3 [H]

Synonym: XC_1836

Alternate gene names: 77761170

Gene position: 2230380-2229931 (Counterclockwise)

Preceding gene: 66768159

Following gene: 66768156

Centisome position: 43.32

GC content: 67.33

Gene sequence:

>450_bases
ATGCGCAAACCCGCCTTGCTGATCGTCGCCATCGTCCTGCTTGTGGCCGGGCTCTGGGTCATGCGTGTCGTGCAGACGCC
CAAGCCGCAGTTCGCCCCGCAACTGTCGGCACCTGTGGCTGCCGCACCAGCCGTAACGTCGGCGCGCCAGGTGCCGCGGC
TGCCGGCATTCCTGCCGACCGAAGCCATGGCAACCATCGTGTTGATACAACGCGGCGGGCCGTTTCCGTATCCGCAGGAC
GGCGCGGTGTTCGGCAATCGTGAGCAGCGGCTGCCGGAACGGCCGCGCGGCTATTACCACGAGTACACCGTGGACACGCC
CGGCAGCGCAGATCGCGGCGCACGCCGGATCGTCACCGGCGGCACGCCGCCGCAGAGCTGGTACTACAGCGACGATCACT
ACGCCAATTTCAAATCCTTCCAGGGCCCCACCCCGGAGCAGGCACCATGA

Upstream 100 bases:

>100_bases
CTTCCCCGCCGCCACGTTCAAAGTCGACACAGTCGCGCGACGGCATACTTGGTCTCTCATCCGCCATGGCTGCGGTTGCC
TCTTTCGCTTCGGACCACCC

Downstream 100 bases:

>100_bases
GTGCAGGCGACTTTGCGCTGGATCTATCCGACCCACAGCAGTCCGGCGTGTATAAGGCGCAGACCCAGGACCTGGACACC
ATGGCCGCCCTGGCACGCGA

Product: ribonuclease

Products: NA

Alternate protein names: RNase Sa3 [H]

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MRKPALLIVAIVLLVAGLWVMRVVQTPKPQFAPQLSAPVAAAPAVTSARQVPRLPAFLPTEAMATIVLIQRGGPFPYPQD
GAVFGNREQRLPERPRGYYHEYTVDTPGSADRGARRIVTGGTPPQSWYYSDDHYANFKSFQGPTPEQAP

Sequences:

>Translated_149_residues
MRKPALLIVAIVLLVAGLWVMRVVQTPKPQFAPQLSAPVAAAPAVTSARQVPRLPAFLPTEAMATIVLIQRGGPFPYPQD
GAVFGNREQRLPERPRGYYHEYTVDTPGSADRGARRIVTGGTPPQSWYYSDDHYANFKSFQGPTPEQAP
>Mature_149_residues
MRKPALLIVAIVLLVAGLWVMRVVQTPKPQFAPQLSAPVAAAPAVTSARQVPRLPAFLPTEAMATIVLIQRGGPFPYPQD
GAVFGNREQRLPERPRGYYHEYTVDTPGSADRGARRIVTGGTPPQSWYYSDDHYANFKSFQGPTPEQAP

Specific function: Unknown

COG id: COG4290

COG function: function code F; Guanyl-specific ribonuclease Sa

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribonuclease N1/T1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000026
- InterPro:   IPR016191 [H]

Pfam domain/function: PF00545 Ribonuclease [H]

EC number: =3.1.27.3 [H]

Molecular weight: Translated: 16341; Mature: 16341

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKPALLIVAIVLLVAGLWVMRVVQTPKPQFAPQLSAPVAAAPAVTSARQVPRLPAFLPT
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCH
EAMATIVLIQRGGPFPYPQDGAVFGNREQRLPERPRGYYHEYTVDTPGSADRGARRIVTG
HHHEEEEEEECCCCCCCCCCCCEECCHHHCCCCCCCCCCEEEECCCCCCCCCCCEEEEEC
GTPPQSWYYSDDHYANFKSFQGPTPEQAP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRKPALLIVAIVLLVAGLWVMRVVQTPKPQFAPQLSAPVAAAPAVTSARQVPRLPAFLPT
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCH
EAMATIVLIQRGGPFPYPQDGAVFGNREQRLPERPRGYYHEYTVDTPGSADRGARRIVTG
HHHEEEEEEECCCCCCCCCCCCEECCHHHCCCCCCCCCCEEEECCCCCCCCCCCEEEEEC
GTPPQSWYYSDDHYANFKSFQGPTPEQAP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1398084 [H]