| Definition | Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome. |
|---|---|
| Accession | NC_007086 |
| Length | 5,148,708 |
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The map label for this gene is dxs [H]
Identifier: 77761160
GI number: 77761160
Start: 2015759
End: 2017675
Strand: Reverse
Name: dxs [H]
Synonym: XC_1678
Alternate gene names: 77761160
Gene position: 2017675-2015759 (Counterclockwise)
Preceding gene: 77761161
Following gene: 66767973
Centisome position: 39.19
GC content: 66.41
Gene sequence:
>1917_bases ATGATCGACTCCACCCGCTATCCGCGCCTGTCGCGCATCCAGACTCCCGACGATCTGCGTACCTTCGAGGAGGCCGACCT CACCGCGGTCGCCGACGAACTGCGTGCCTACCTGATCGAATCGGTGGGCAAGAGCGGCGGCCATTTCGCCGCGGGTCTGG GGGTGATCGAACTCACCGTCGCCCTGCACTACCTCTACCAGACGCCGGTCGACCAACTGGTGTGGGACGTGGGCCATCAG ACCTACCCGCACAAGATCCTGACCGGGCGCCGCGACCAGATCCACACGGTCAAGCAAAAGGACGGCGTGGCGCCGTTCCC CAAGCGCGAGGAGAGCGTGTACGACACCTTCGGTGTTGGGCATTCATCGACCTCGATCTCCGCCGCGCTGGGCATGGCGA TCGCTGCGCAGCGCAATGGCGACGACCGCAAGGTGGTGGCGGTGATCGGCGATGGCGCAATGACCGCCGGCATGGTCTAC GAGGCGCTCAACCACGCCGGCGGCATGGACCCGGAACCCAACCTGCTGGTGATCCTCAACGACAACCGCATGTCGATCTC CGAGGCAGTGGGCGGGCTGACCAAGATGCTCGGCCGTGCCAGCGGCAGCCGCACGCTCAACGCGATCCGCGAGGGCGGCA AGAAGATCCTCGGCGACAAGAAGAACAACCCCACCGCGCGCTTCGTGCGCCGCTGGGAAGAACACTGGAAAGGCATGTTC GTGCCGTCCACGTTGTTCGAGGAAATGGGCTTCCACTACACAGGCCCGATCGATGGCCACGACCTGCCCAGCCTGGTCGG CGCGCTGAAGACCTTGAAGACCTTGAAGGGTCCGCAGCTGCTGCACGTGATCACCACCAAGGGCAAGGGCTACGAGCTCG CCGAAGGCGACCAGATTGGTTACCACGCGGTCGGCCCGTTCGACCCGAGCAAGGGCCTGGTGGCCAAGGCCGGCGCCAAG AAGCCGACCTACACCGATGTCTTCAGCGACTGGGTGTGCGACATGGCGGCGGCCGATCCCAAAATGCTGGTGATCACCCC GGCGATGCGCGAAGGCTCCGGCCTGGTGCGCTTCAGCAAGGAATATCCGCAGCGCTATTTCGACGTGGCGATTGCCGAGC AACACGCGGTCACCCTGGCCGCCGGCATGGCAACGCAAGGCGCCAAGCCGGTGGTGGCGATTTATTCGACGTTCCTGCAG CGCGGTTACGACCAGCTGGTGCACGACGTGGCGGTGCAGAAACTGGATGTGCTGTTCGCGATCGATCGCGGCGGCGTGGT CGGCCCCGATGGCGCCACCCACGCCGGCAACCTGGACCTGAGCTTCCTGCGCTGCGTACCGCACATGGTGGTGATGGCGC CGGCAGATGAGGCCGAGTGCCGCCAGATGCTCACCACCGGCCTGCGCTATGAGGGCCCGGCCGCGGTGCGCTATCCGCGC GGTACCGGCCCCGGCACCGCACTGGATGCCGCCCTGACCACCTTGCCGATCGGCAAGGCGCAGCTGCGTCACAGCGGCGC ACGCATCGCGCTGCTCGGCTTCGGCGCCACGGTGGATGCCGCTGAAGCGGTCGGCCGCGAGTTGGGCCTGACCGTGGTGA ACATGCGTTTCGTCAAACCACTCGACAAGGCGATGCTGCTGGAGCTGGCCAAGTGCCACGAAGCCTTTGTCAGCATCGAA GACAACGTGGTGGCCGGCGGCGCAGGCTCGGGCGTCTCCGAGCTGCTCAATGCCGAAGGCGTGCTGATGCCGATGCTGCA CCTGGGCCTGCCGGACAGCTTCCAGCACCACGCCAGCCGCGAAGACCTGCTCGCCGAGGCCGGTATTGACCAGGCCGGCA TCCGCGCCGCCGTGCTCAAGCGCTGGCCGCAGCTGATGGCGAAGGGCCAGCAGGCATTGAATGCAGCGGCAGGCTGA
Upstream 100 bases:
>100_bases CGGCTGCTGCAGCCATCACTTCCCGCTGACACCTGAACCGGTTTGCTTGCCGGGCCTTCGCATGGGGAGGACAATATGGC TTCAGCACATTGACACGATG
Downstream 100 bases:
>100_bases GGCCTGCTGTGCTGCATGGCGTGAGGAGCGCAGGCTGAGGCCTGCGCGCATCGTTGGCGAGAGGGCTGAGTCCTCTTTGC TACACCGCATTCGATGCAAT
Product: 1-deoxy-D-xylulose-5-phosphate synthase
Products: NA
Alternate protein names: 1-deoxyxylulose-5-phosphate synthase; DXP synthase; DXPS [H]
Number of amino acids: Translated: 638; Mature: 638
Protein sequence:
>638_residues MIDSTRYPRLSRIQTPDDLRTFEEADLTAVADELRAYLIESVGKSGGHFAAGLGVIELTVALHYLYQTPVDQLVWDVGHQ TYPHKILTGRRDQIHTVKQKDGVAPFPKREESVYDTFGVGHSSTSISAALGMAIAAQRNGDDRKVVAVIGDGAMTAGMVY EALNHAGGMDPEPNLLVILNDNRMSISEAVGGLTKMLGRASGSRTLNAIREGGKKILGDKKNNPTARFVRRWEEHWKGMF VPSTLFEEMGFHYTGPIDGHDLPSLVGALKTLKTLKGPQLLHVITTKGKGYELAEGDQIGYHAVGPFDPSKGLVAKAGAK KPTYTDVFSDWVCDMAAADPKMLVITPAMREGSGLVRFSKEYPQRYFDVAIAEQHAVTLAAGMATQGAKPVVAIYSTFLQ RGYDQLVHDVAVQKLDVLFAIDRGGVVGPDGATHAGNLDLSFLRCVPHMVVMAPADEAECRQMLTTGLRYEGPAAVRYPR GTGPGTALDAALTTLPIGKAQLRHSGARIALLGFGATVDAAEAVGRELGLTVVNMRFVKPLDKAMLLELAKCHEAFVSIE DNVVAGGAGSGVSELLNAEGVLMPMLHLGLPDSFQHHASREDLLAEAGIDQAGIRAAVLKRWPQLMAKGQQALNAAAG
Sequences:
>Translated_638_residues MIDSTRYPRLSRIQTPDDLRTFEEADLTAVADELRAYLIESVGKSGGHFAAGLGVIELTVALHYLYQTPVDQLVWDVGHQ TYPHKILTGRRDQIHTVKQKDGVAPFPKREESVYDTFGVGHSSTSISAALGMAIAAQRNGDDRKVVAVIGDGAMTAGMVY EALNHAGGMDPEPNLLVILNDNRMSISEAVGGLTKMLGRASGSRTLNAIREGGKKILGDKKNNPTARFVRRWEEHWKGMF VPSTLFEEMGFHYTGPIDGHDLPSLVGALKTLKTLKGPQLLHVITTKGKGYELAEGDQIGYHAVGPFDPSKGLVAKAGAK KPTYTDVFSDWVCDMAAADPKMLVITPAMREGSGLVRFSKEYPQRYFDVAIAEQHAVTLAAGMATQGAKPVVAIYSTFLQ RGYDQLVHDVAVQKLDVLFAIDRGGVVGPDGATHAGNLDLSFLRCVPHMVVMAPADEAECRQMLTTGLRYEGPAAVRYPR GTGPGTALDAALTTLPIGKAQLRHSGARIALLGFGATVDAAEAVGRELGLTVVNMRFVKPLDKAMLLELAKCHEAFVSIE DNVVAGGAGSGVSELLNAEGVLMPMLHLGLPDSFQHHASREDLLAEAGIDQAGIRAAVLKRWPQLMAKGQQALNAAAG >Mature_638_residues MIDSTRYPRLSRIQTPDDLRTFEEADLTAVADELRAYLIESVGKSGGHFAAGLGVIELTVALHYLYQTPVDQLVWDVGHQ TYPHKILTGRRDQIHTVKQKDGVAPFPKREESVYDTFGVGHSSTSISAALGMAIAAQRNGDDRKVVAVIGDGAMTAGMVY EALNHAGGMDPEPNLLVILNDNRMSISEAVGGLTKMLGRASGSRTLNAIREGGKKILGDKKNNPTARFVRRWEEHWKGMF VPSTLFEEMGFHYTGPIDGHDLPSLVGALKTLKTLKGPQLLHVITTKGKGYELAEGDQIGYHAVGPFDPSKGLVAKAGAK KPTYTDVFSDWVCDMAAADPKMLVITPAMREGSGLVRFSKEYPQRYFDVAIAEQHAVTLAAGMATQGAKPVVAIYSTFLQ RGYDQLVHDVAVQKLDVLFAIDRGGVVGPDGATHAGNLDLSFLRCVPHMVVMAPADEAECRQMLTTGLRYEGPAAVRYPR GTGPGTALDAALTTLPIGKAQLRHSGARIALLGFGATVDAAEAVGRELGLTVVNMRFVKPLDKAMLLELAKCHEAFVSIE DNVVAGGAGSGVSELLNAEGVLMPMLHLGLPDSFQHHASREDLLAEAGIDQAGIRAAVLKRWPQLMAKGQQALNAAAG
Specific function: Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) [H]
COG id: COG1154
COG function: function code HI; Deoxyxylulose-5-phosphate synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transketolase family. DXPS subfamily [H]
Homologues:
Organism=Homo sapiens, GI205277463, Length=556, Percent_Identity=23.9208633093525, Blast_Score=97, Evalue=5e-20, Organism=Homo sapiens, GI4507521, Length=556, Percent_Identity=23.9208633093525, Blast_Score=97, Evalue=5e-20, Organism=Homo sapiens, GI225637463, Length=294, Percent_Identity=26.8707482993197, Blast_Score=86, Evalue=7e-17, Organism=Homo sapiens, GI225637459, Length=247, Percent_Identity=27.5303643724696, Blast_Score=86, Evalue=1e-16, Organism=Homo sapiens, GI225637461, Length=247, Percent_Identity=27.5303643724696, Blast_Score=86, Evalue=1e-16, Organism=Homo sapiens, GI133778974, Length=522, Percent_Identity=22.4137931034483, Blast_Score=72, Evalue=2e-12, Organism=Escherichia coli, GI1786622, Length=622, Percent_Identity=56.4308681672026, Blast_Score=736, Evalue=0.0, Organism=Caenorhabditis elegans, GI17539652, Length=466, Percent_Identity=23.8197424892704, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI24666278, Length=470, Percent_Identity=24.468085106383, Blast_Score=87, Evalue=5e-17, Organism=Drosophila melanogaster, GI24645119, Length=240, Percent_Identity=27.9166666666667, Blast_Score=80, Evalue=4e-15, Organism=Drosophila melanogaster, GI45551847, Length=240, Percent_Identity=27.9166666666667, Blast_Score=80, Evalue=5e-15, Organism=Drosophila melanogaster, GI45550715, Length=240, Percent_Identity=27.9166666666667, Blast_Score=80, Evalue=5e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001017 - InterPro: IPR005477 - InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005475 - InterPro: IPR020826 - InterPro: IPR005476 - InterPro: IPR005474 [H]
Pfam domain/function: PF00676 E1_dh; PF02779 Transket_pyr; PF02780 Transketolase_C [H]
EC number: =2.2.1.7 [H]
Molecular weight: Translated: 68396; Mature: 68396
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: PS00801 TRANSKETOLASE_1 ; PS00802 TRANSKETOLASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDSTRYPRLSRIQTPDDLRTFEEADLTAVADELRAYLIESVGKSGGHFAAGLGVIELTV CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH ALHYLYQTPVDQLVWDVGHQTYPHKILTGRRDQIHTVKQKDGVAPFPKREESVYDTFGVG HHHHHHHCCHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCC HSSTSISAALGMAIAAQRNGDDRKVVAVIGDGAMTAGMVYEALNHAGGMDPEPNLLVILN CCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCEEEEEC DNRMSISEAVGGLTKMLGRASGSRTLNAIREGGKKILGDKKNNPTARFVRRWEEHWKGMF CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHCCCC VPSTLFEEMGFHYTGPIDGHDLPSLVGALKTLKTLKGPQLLHVITTKGKGYELAEGDQIG CHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCC YHAVGPFDPSKGLVAKAGAKKPTYTDVFSDWVCDMAAADPKMLVITPAMREGSGLVRFSK EEEECCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEECH EYPQRYFDVAIAEQHAVTLAAGMATQGAKPVVAIYSTFLQRGYDQLVHDVAVQKLDVLFA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE IDRGGVVGPDGATHAGNLDLSFLRCVPHMVVMAPADEAECRQMLTTGLRYEGPAAVRYPR ECCCCEECCCCCCCCCCCCHHHHHHHHHEEEECCCCHHHHHHHHHHCCCCCCCCEEECCC GTGPGTALDAALTTLPIGKAQLRHSGARIALLGFGATVDAAEAVGRELGLTVVNMRFVKP CCCCCHHHHHHHHHCCCCHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCEEEEHHHHHH LDKAMLLELAKCHEAFVSIEDNVVAGGAGSGVSELLNAEGVLMPMLHLGLPDSFQHHASR HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHCCCCHHHHHHHCCCCCHHHHHCCH EDLLAEAGIDQAGIRAAVLKRWPQLMAKGQQALNAAAG HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MIDSTRYPRLSRIQTPDDLRTFEEADLTAVADELRAYLIESVGKSGGHFAAGLGVIELTV CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH ALHYLYQTPVDQLVWDVGHQTYPHKILTGRRDQIHTVKQKDGVAPFPKREESVYDTFGVG HHHHHHHCCHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCC HSSTSISAALGMAIAAQRNGDDRKVVAVIGDGAMTAGMVYEALNHAGGMDPEPNLLVILN CCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCEEEEEC DNRMSISEAVGGLTKMLGRASGSRTLNAIREGGKKILGDKKNNPTARFVRRWEEHWKGMF CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHCCCC VPSTLFEEMGFHYTGPIDGHDLPSLVGALKTLKTLKGPQLLHVITTKGKGYELAEGDQIG CHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCC YHAVGPFDPSKGLVAKAGAKKPTYTDVFSDWVCDMAAADPKMLVITPAMREGSGLVRFSK EEEECCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEECH EYPQRYFDVAIAEQHAVTLAAGMATQGAKPVVAIYSTFLQRGYDQLVHDVAVQKLDVLFA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE IDRGGVVGPDGATHAGNLDLSFLRCVPHMVVMAPADEAECRQMLTTGLRYEGPAAVRYPR ECCCCEECCCCCCCCCCCCHHHHHHHHHEEEECCCCHHHHHHHHHHCCCCCCCCEEECCC GTGPGTALDAALTTLPIGKAQLRHSGARIALLGFGATVDAAEAVGRELGLTVVNMRFVKP CCCCCHHHHHHHHHCCCCHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCEEEEHHHHHH LDKAMLLELAKCHEAFVSIEDNVVAGGAGSGVSELLNAEGVLMPMLHLGLPDSFQHHASR HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHCCCCHHHHHHHCCCCCHHHHHCCH EDLLAEAGIDQAGIRAAVLKRWPQLMAKGQQALNAAAG HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12024217 [H]