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The map label for this gene is yibD [C]

Identifier: 77761137

GI number: 77761137

Start: 1422349

End: 1424376

Strand: Reverse

Name: yibD [C]

Synonym: XC_1175

Alternate gene names: 77761137

Gene position: 1424376-1422349 (Counterclockwise)

Preceding gene: 66767509

Following gene: 66767500

Centisome position: 27.66

GC content: 67.9

Gene sequence:

>2028_bases
ATGCGGACCCGCGGATGGCGCGCCACCTGGCAGCGCATCCGCGTGCACACGCAGGCGCCGCCGGTCGCGCTCGGCACGCC
GCTGTGGTTGCCCGAGGCTGCGCCATTTGCGGCATTTGCGGTGCCGCACAGCGCTACGCCGCAGGTGACGGTGGTGATCC
CGGTGTACAACCAGATCGCGCACACACTCGCCTGCCTGCGTGCACTGGCCGCGCATCCACCGGCGCTGGGCATCGAGATC
GTGGTGGTGGACGACGGCAGCAGCGACGCCACCGCCATCGATCTGCCGCACGTACAGGGCCTGCACTACCACCAGCGCGC
ACGCAACGGCGGCTTCATCGCTGCCTGCAACGACGGCATTGGGCTGGCACGCGGCGACTACGTGGTGCTGCTCAACAACG
ACACCGTGCCGCAGCCGGGCTGGCTGGACCGGTTGATCGGCACCTTTACCGCGCATCCATCTGCCGGCCTGGTGGGCGCA
CAGCTGGTGTATCCGGACGGGCGCTTGCAGGAATCCGGCGGCGTGGTGTTCGGCGATGGCAGCGCCTGGAGCTACGGGCG
CTTCGAGTCCGCTGAGGATCCGCGCTACGCCTACGTGCGGCAGATGGACTATTGCTCCGGCGCGGCGATCGCGCTGCCGC
GTGCGCTGCTGCAGACCTTGGGTGGGCTGGATCGGCGCTACATGCCAGCGTATTACGAAGACACCGACCTGGCCTTCGCG
GTGCGTGCCGCAGGGCACAGCGTGCTGGTGCAGCCGGCTAGCGTGGTGGTGCATGACGAAGGCACCAGCAACGGCACCGA
CACCCGCACCGGCGTCAAAGCGTATCAGGTGCGCAACCGCAGCGTGTTCGCCGAAAAATGGCAGCAGGTGCTGCAGGCGC
AGTTGCCGGTTGGCAGCGTGCCCGACCCCGCCAGCCTGCACCGCCACCAACGCCAGGTCCTCATCCTGGACGAATGCGTG
CCGCAGCCGGACCGTGACTCCGGTTCGTTGCGGCAGTTCAACCTGATCCGCCTGTTGTGCGCCGAAGGTGCACACGTGGT
GTTCGTGCCCACCCGTCGCGAGCATGCCGGCCGCCACACGCAGGCCTTGCAGCAACTCGGCGTGGAAGTCTGGTATGCGC
CGTTCCTGGAAGGCATCGGCACCTGGCTGCGCACGCATGGCCCACGTTTCAGCGCGGTGCTGCTGGTGCGCCACCACGTC
GCCCATGCATGCCTGCCACTGCTCAAGCGTTACGCGCCGCAGGCACGCACCTTGTTCGATACGGTGGATCTGCACTATCT
GCGCGAGCGCCGTGGCGCCGAGCTTGCCGGCGACGCCAACCTGCTGCGCAGCGCCGAACGCACGCGCCTGCGCGAGCTGG
AGATCATGGCGGCCACCGACGTGACGGTGCTGGTGTCAGCGGCCGAGCAGGCGCAGCTGCATGCGGATGCGCCGCAAATC
CGCACTGCCCTGCTCTCCAACCTGCACGAGGTTGCCGGCAGCGGCCAGCCGTTCGCGCAGCGGCGCGATCTGGTGTTTGT
CGGCGGCTTCCGGCATCCACCGAACGTGGATGCGGTGCAGTGGTTCATCAGTGCGATTTTTCCGCTGGTGCGCGCGCAGT
TGCCGGACGTGGTGTTCCACTGCATCGGCGCCGACGTGCCCGCCGCACTGCAGTTACTGGCCGATGAGACGCCGGGCGTG
CAGTTGCATGGGCACGTGCCGGATCTGGTGCCGTACATGGACACGCTGCGTATTGCAGTGGCGCCGCTGCGCTTCGGTGC
CGGCGTCAAGGGCAAGATCAACCTGAGCATGGCGCACGGCCAGCCGGTCGTAGGCACCACCTGCGCGGTGGAAGGCATGC
ACCTGCAAGACGGCGAGGATGTGTGCGTGGCCGATGAGGCAGATGCGTTCGCCGCCGCCATCGTGCGCCTGTATCAGGAC
GCCGCGCTCTGGCAACGCCTGGCCGACAACGGCCTGCGCAACGTGGCGCAGCATTTTTCGCTGGATGCCGCACGCGCGAC
GGTGCGGACCTTGTTTATCGCGAAGTGA

Upstream 100 bases:

>100_bases
TGGCTTAAGCTGGAGTTCCAACGGAATGTCGATGTCCTTGGCCGATGCGCGCTATCTGTTCAATCGCGTGCTTGGCCTGA
TCCACCGCAGCGTCGCCAGC

Downstream 100 bases:

>100_bases
GGCGAGGTGGGCGTGCATGCGCCGTTTGGTGTACTGCATGGGCTCTCACAGACACCGCCTCAACCGATCATTCGCTCAGC
GCTCTTCACTCACCGCTTTG

Product: glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 675; Mature: 675

Protein sequence:

>675_residues
MRTRGWRATWQRIRVHTQAPPVALGTPLWLPEAAPFAAFAVPHSATPQVTVVIPVYNQIAHTLACLRALAAHPPALGIEI
VVVDDGSSDATAIDLPHVQGLHYHQRARNGGFIAACNDGIGLARGDYVVLLNNDTVPQPGWLDRLIGTFTAHPSAGLVGA
QLVYPDGRLQESGGVVFGDGSAWSYGRFESAEDPRYAYVRQMDYCSGAAIALPRALLQTLGGLDRRYMPAYYEDTDLAFA
VRAAGHSVLVQPASVVVHDEGTSNGTDTRTGVKAYQVRNRSVFAEKWQQVLQAQLPVGSVPDPASLHRHQRQVLILDECV
PQPDRDSGSLRQFNLIRLLCAEGAHVVFVPTRREHAGRHTQALQQLGVEVWYAPFLEGIGTWLRTHGPRFSAVLLVRHHV
AHACLPLLKRYAPQARTLFDTVDLHYLRERRGAELAGDANLLRSAERTRLRELEIMAATDVTVLVSAAEQAQLHADAPQI
RTALLSNLHEVAGSGQPFAQRRDLVFVGGFRHPPNVDAVQWFISAIFPLVRAQLPDVVFHCIGADVPAALQLLADETPGV
QLHGHVPDLVPYMDTLRIAVAPLRFGAGVKGKINLSMAHGQPVVGTTCAVEGMHLQDGEDVCVADEADAFAAAIVRLYQD
AALWQRLADNGLRNVAQHFSLDAARATVRTLFIAK

Sequences:

>Translated_675_residues
MRTRGWRATWQRIRVHTQAPPVALGTPLWLPEAAPFAAFAVPHSATPQVTVVIPVYNQIAHTLACLRALAAHPPALGIEI
VVVDDGSSDATAIDLPHVQGLHYHQRARNGGFIAACNDGIGLARGDYVVLLNNDTVPQPGWLDRLIGTFTAHPSAGLVGA
QLVYPDGRLQESGGVVFGDGSAWSYGRFESAEDPRYAYVRQMDYCSGAAIALPRALLQTLGGLDRRYMPAYYEDTDLAFA
VRAAGHSVLVQPASVVVHDEGTSNGTDTRTGVKAYQVRNRSVFAEKWQQVLQAQLPVGSVPDPASLHRHQRQVLILDECV
PQPDRDSGSLRQFNLIRLLCAEGAHVVFVPTRREHAGRHTQALQQLGVEVWYAPFLEGIGTWLRTHGPRFSAVLLVRHHV
AHACLPLLKRYAPQARTLFDTVDLHYLRERRGAELAGDANLLRSAERTRLRELEIMAATDVTVLVSAAEQAQLHADAPQI
RTALLSNLHEVAGSGQPFAQRRDLVFVGGFRHPPNVDAVQWFISAIFPLVRAQLPDVVFHCIGADVPAALQLLADETPGV
QLHGHVPDLVPYMDTLRIAVAPLRFGAGVKGKINLSMAHGQPVVGTTCAVEGMHLQDGEDVCVADEADAFAAAIVRLYQD
AALWQRLADNGLRNVAQHFSLDAARATVRTLFIAK
>Mature_675_residues
MRTRGWRATWQRIRVHTQAPPVALGTPLWLPEAAPFAAFAVPHSATPQVTVVIPVYNQIAHTLACLRALAAHPPALGIEI
VVVDDGSSDATAIDLPHVQGLHYHQRARNGGFIAACNDGIGLARGDYVVLLNNDTVPQPGWLDRLIGTFTAHPSAGLVGA
QLVYPDGRLQESGGVVFGDGSAWSYGRFESAEDPRYAYVRQMDYCSGAAIALPRALLQTLGGLDRRYMPAYYEDTDLAFA
VRAAGHSVLVQPASVVVHDEGTSNGTDTRTGVKAYQVRNRSVFAEKWQQVLQAQLPVGSVPDPASLHRHQRQVLILDECV
PQPDRDSGSLRQFNLIRLLCAEGAHVVFVPTRREHAGRHTQALQQLGVEVWYAPFLEGIGTWLRTHGPRFSAVLLVRHHV
AHACLPLLKRYAPQARTLFDTVDLHYLRERRGAELAGDANLLRSAERTRLRELEIMAATDVTVLVSAAEQAQLHADAPQI
RTALLSNLHEVAGSGQPFAQRRDLVFVGGFRHPPNVDAVQWFISAIFPLVRAQLPDVVFHCIGADVPAALQLLADETPGV
QLHGHVPDLVPYMDTLRIAVAPLRFGAGVKGKINLSMAHGQPVVGTTCAVEGMHLQDGEDVCVADEADAFAAAIVRLYQD
AALWQRLADNGLRNVAQHFSLDAARATVRTLFIAK

Specific function: Unknown

COG id: COG0438

COG function: function code M; Glycosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 73530; Mature: 73530

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTRGWRATWQRIRVHTQAPPVALGTPLWLPEAAPFAAFAVPHSATPQVTVVIPVYNQIA
CCCCCHHHHHHHHEEECCCCCEECCCCCCCCCCCCCEEEECCCCCCCCEEEEEECHHHHH
HTLACLRALAAHPPALGIEIVVVDDGSSDATAIDLPHVQGLHYHQRARNGGFIAACNDGI
HHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEECCCCCCCHHHHHCCCCCEEEEECCCC
GLARGDYVVLLNNDTVPQPGWLDRLIGTFTAHPSAGLVGAQLVYPDGRLQESGGVVFGDG
CEECCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCEECCCCEEEECC
SAWSYGRFESAEDPRYAYVRQMDYCSGAAIALPRALLQTLGGLDRRYMPAYYEDTDLAFA
CCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCEEE
VRAAGHSVLVQPASVVVHDEGTSNGTDTRTGVKAYQVRNRSVFAEKWQQVLQAQLPVGSV
EECCCCEEEEECCEEEEECCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCC
PDPASLHRHQRQVLILDECVPQPDRDSGSLRQFNLIRLLCAEGAHVVFVPTRREHAGRHT
CCHHHHHHHCCCEEEEHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCHHHCCHHH
QALQQLGVEVWYAPFLEGIGTWLRTHGPRFSAVLLVRHHVAHACLPLLKRYAPQARTLFD
HHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
TVDLHYLRERRGAELAGDANLLRSAERTRLRELEIMAATDVTVLVSAAEQAQLHADAPQI
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHEEEEEECCCEEEEECHHHHHHCCCCHHH
RTALLSNLHEVAGSGQPFAQRRDLVFVGGFRHPPNVDAVQWFISAIFPLVRAQLPDVVFH
HHHHHHHHHHHHCCCCCCHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
CIGADVPAALQLLADETPGVQLHGHVPDLVPYMDTLRIAVAPLRFGAGVKGKINLSMAHG
HHCCCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC
QPVVGTTCAVEGMHLQDGEDVCVADEADAFAAAIVRLYQDAALWQRLADNGLRNVAQHFS
CCCEECEEEEECCEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LDAARATVRTLFIAK
CHHHHHHHHHHEECC
>Mature Secondary Structure
MRTRGWRATWQRIRVHTQAPPVALGTPLWLPEAAPFAAFAVPHSATPQVTVVIPVYNQIA
CCCCCHHHHHHHHEEECCCCCEECCCCCCCCCCCCCEEEECCCCCCCCEEEEEECHHHHH
HTLACLRALAAHPPALGIEIVVVDDGSSDATAIDLPHVQGLHYHQRARNGGFIAACNDGI
HHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEECCCCCCCHHHHHCCCCCEEEEECCCC
GLARGDYVVLLNNDTVPQPGWLDRLIGTFTAHPSAGLVGAQLVYPDGRLQESGGVVFGDG
CEECCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCEECCCCEEEECC
SAWSYGRFESAEDPRYAYVRQMDYCSGAAIALPRALLQTLGGLDRRYMPAYYEDTDLAFA
CCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCEEE
VRAAGHSVLVQPASVVVHDEGTSNGTDTRTGVKAYQVRNRSVFAEKWQQVLQAQLPVGSV
EECCCCEEEEECCEEEEECCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCC
PDPASLHRHQRQVLILDECVPQPDRDSGSLRQFNLIRLLCAEGAHVVFVPTRREHAGRHT
CCHHHHHHHCCCEEEEHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCHHHCCHHH
QALQQLGVEVWYAPFLEGIGTWLRTHGPRFSAVLLVRHHVAHACLPLLKRYAPQARTLFD
HHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
TVDLHYLRERRGAELAGDANLLRSAERTRLRELEIMAATDVTVLVSAAEQAQLHADAPQI
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHEEEEEECCCEEEEECHHHHHHCCCCHHH
RTALLSNLHEVAGSGQPFAQRRDLVFVGGFRHPPNVDAVQWFISAIFPLVRAQLPDVVFH
HHHHHHHHHHHHCCCCCCHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
CIGADVPAALQLLADETPGVQLHGHVPDLVPYMDTLRIAVAPLRFGAGVKGKINLSMAHG
HHCCCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC
QPVVGTTCAVEGMHLQDGEDVCVADEADAFAAAIVRLYQDAALWQRLADNGLRNVAQHFS
CCCEECEEEEECCEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LDAARATVRTLFIAK
CHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]