Click here to switch to the map view.

The map label for this gene is ygfZ [C]

Identifier: 66768300

GI number: 66768300

Start: 2392794

End: 2393666

Strand: Reverse

Name: ygfZ [C]

Synonym: XC_1980

Alternate gene names: 66768300

Gene position: 2393666-2392794 (Counterclockwise)

Preceding gene: 66768311

Following gene: 66768298

Centisome position: 46.49

GC content: 64.38

Gene sequence:

>873_bases
ATGGCTGACAACCTGAATCTTATTCCACATGGTTTTGGCTCCCTGCACGACATGCAATACGTCCGCTTGAGCGGTCCGGA
TGCAGTGGCGTTCGCGCATGCCCAATTTGCCAATGACGTGCAAGCACTGGCGATTGGGCAGTGGCAATGGAATGCGTGGC
TGACAGCGAAGGGGCGCGTGATTGCCATTTTCGCACTCTTGCGTGATGAGGATGCGCAATTGCTGATGCTGTTGCCCGAT
GGCAACGCGGCCGAGATCGCCGCGCAGCTCGGCCGTTTCGTGTTCCGGCGCAAGCTGCGCATCACCGAGATTGCGCTGAC
CGCACAAGGCGCGTTCGCCGCACCCGCACGCGCGCAGGCGGCACATGCCGACGTGGCTGCGGATGCGATCGAACTGGACA
TGGGCAGCCCTGCCTTGCCGCGCACGCTGGTGTTGCGCGCGTCGGACACATTGGCAGCGCCTATCGATCTGCCGAACATG
GATGCCGCATGGCGTCGCGCAGACCTGCAGCTAGGGCTGGTGCGGCTGCCAGATACGCAGCGCGAACAGTGGACCCCGCA
ACAGCTGGCGTTGGACCAGCTGCATGCGTTCAGCGTCAAAAAGGGCTGTTACCCGGGCCAGGAAATCGTGGCGCGCACGC
ATTTTCTGGGCAAAGCCAAACGCGCGGTGCATTTGCTGGAAACCGACGCTGCGGTTGCGCCGGGCGATGCGGTGCGCCTG
GACGGCGCTGAGGTGGGCAGCGTGGTCAGTTGCGCCGAGAACGTGGCGCTAGCGGTGCTGCCGCTGGAGCTGGCAATTGA
GGCAGGCATGACGCTGAGCGCCGGCACCTCCCCTGCCCGACCGCTGCAGATCCTGCCCGGGCTGGCCCGCTAA

Upstream 100 bases:

>100_bases
CCTGAGGAGAAGGCTGCGTCTCGGAATCCTGCGCTGGGGTGGGGGTTGGATGGCCTATCATAGTGGTCTCATAACATTGC
GATCTTAGTCCTCCCCTTCC

Downstream 100 bases:

>100_bases
GGGCAGCGATTCTGCTCCACAGGGTGGTGCGACATTTCGCCGCAGCCATCCCTGTGCACGCGGCGGACTCGCGTTCGCCG
GGCATCAAGCGAGTCAATGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MADNLNLIPHGFGSLHDMQYVRLSGPDAVAFAHAQFANDVQALAIGQWQWNAWLTAKGRVIAIFALLRDEDAQLLMLLPD
GNAAEIAAQLGRFVFRRKLRITEIALTAQGAFAAPARAQAAHADVAADAIELDMGSPALPRTLVLRASDTLAAPIDLPNM
DAAWRRADLQLGLVRLPDTQREQWTPQQLALDQLHAFSVKKGCYPGQEIVARTHFLGKAKRAVHLLETDAAVAPGDAVRL
DGAEVGSVVSCAENVALAVLPLELAIEAGMTLSAGTSPARPLQILPGLAR

Sequences:

>Translated_290_residues
MADNLNLIPHGFGSLHDMQYVRLSGPDAVAFAHAQFANDVQALAIGQWQWNAWLTAKGRVIAIFALLRDEDAQLLMLLPD
GNAAEIAAQLGRFVFRRKLRITEIALTAQGAFAAPARAQAAHADVAADAIELDMGSPALPRTLVLRASDTLAAPIDLPNM
DAAWRRADLQLGLVRLPDTQREQWTPQQLALDQLHAFSVKKGCYPGQEIVARTHFLGKAKRAVHLLETDAAVAPGDAVRL
DGAEVGSVVSCAENVALAVLPLELAIEAGMTLSAGTSPARPLQILPGLAR
>Mature_289_residues
ADNLNLIPHGFGSLHDMQYVRLSGPDAVAFAHAQFANDVQALAIGQWQWNAWLTAKGRVIAIFALLRDEDAQLLMLLPDG
NAAEIAAQLGRFVFRRKLRITEIALTAQGAFAAPARAQAAHADVAADAIELDMGSPALPRTLVLRASDTLAAPIDLPNMD
AAWRRADLQLGLVRLPDTQREQWTPQQLALDQLHAFSVKKGCYPGQEIVARTHFLGKAKRAVHLLETDAAVAPGDAVRLD
GAEVGSVVSCAENVALAVLPLELAIEAGMTLSAGTSPARPLQILPGLAR

Specific function: Folate-binding protein involved in regulating the level of ATP-dnaA and in the modification of some tRNAs. It is probably a key factor in regulatory networks that act via tRNA modification, such as initiation of chromosomal replication [H]

COG id: COG0354

COG function: function code R; Predicted aminomethyltransferase related to GcvT

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tRNA-modifying ygfZ family [H]

Homologues:

None

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017703
- InterPro:   IPR006222 [H]

Pfam domain/function: PF01571 GCV_T [H]

EC number: NA

Molecular weight: Translated: 30986; Mature: 30855

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADNLNLIPHGFGSLHDMQYVRLSGPDAVAFAHAQFANDVQALAIGQWQWNAWLTAKGRV
CCCCCCCCCCCCCCCCCEEEEEECCCCCEEEHHHHHHCCCEEEEEECEEEEEEEEECCCE
IAIFALLRDEDAQLLMLLPDGNAAEIAAQLGRFVFRRKLRITEIALTAQGAFAAPARAQA
EEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCEEEEEEEEECCCCCCCCHHHH
AHADVAADAIELDMGSPALPRTLVLRASDTLAAPIDLPNMDAAWRRADLQLGLVRLPDTQ
HHHHHHHHEEEECCCCCCCCEEEEEEECCCEECCCCCCCCCHHHHHCCCEEEEEECCCCC
REQWTPQQLALDQLHAFSVKKGCYPGQEIVARTHFLGKAKRAVHLLETDAAVAPGDAVRL
CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCCEEEE
DGAEVGSVVSCAENVALAVLPLELAIEAGMTLSAGTSPARPLQILPGLAR
CCHHHHHHHHHHCCCEEEEEEHHHHHHCCCEEECCCCCCCCHHHCCCCCC
>Mature Secondary Structure 
ADNLNLIPHGFGSLHDMQYVRLSGPDAVAFAHAQFANDVQALAIGQWQWNAWLTAKGRV
CCCCCCCCCCCCCCCCEEEEEECCCCCEEEHHHHHHCCCEEEEEECEEEEEEEEECCCE
IAIFALLRDEDAQLLMLLPDGNAAEIAAQLGRFVFRRKLRITEIALTAQGAFAAPARAQA
EEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCEEEEEEEEECCCCCCCCHHHH
AHADVAADAIELDMGSPALPRTLVLRASDTLAAPIDLPNMDAAWRRADLQLGLVRLPDTQ
HHHHHHHHEEEECCCCCCCCEEEEEEECCCEECCCCCCCCCHHHHHCCCEEEEEECCCCC
REQWTPQQLALDQLHAFSVKKGCYPGQEIVARTHFLGKAKRAVHLLETDAAVAPGDAVRL
CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCCEEEE
DGAEVGSVVSCAENVALAVLPLELAIEAGMTLSAGTSPARPLQILPGLAR
CCHHHHHHHHHHCCCEEEEEEHHHHHHCCCEEECCCCCCCCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA