| Definition | Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome. |
|---|---|
| Accession | NC_007086 |
| Length | 5,148,708 |
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The map label for this gene is yhjE [H]
Identifier: 66768085
GI number: 66768085
Start: 2144475
End: 2145755
Strand: Direct
Name: yhjE [H]
Synonym: XC_1764
Alternate gene names: 66768085
Gene position: 2144475-2145755 (Clockwise)
Preceding gene: 66768084
Following gene: 66768090
Centisome position: 41.65
GC content: 65.34
Gene sequence:
>1281_bases ATGACTGCCGCCACGCCGCTCGCCACGCCCATCAATTCGCCTGCGCGCGTGCTGTTCGCCAGCCTGATCGGCACCACCAT CGAGTTTTTCGATTTCTACATCTACGCCACCGCGGCGGTGCTGGTGTTTCCCACGTTGTTCTTCCCGGCCGGCGATGGCG GCGCGGCCATGCTGCAGTCGCTGGCGACGTTCGCGGTGGCCTTCATCGCGCGGCCGGTGGGCTCGGCGGTGTTCGGGCAC TTCGGCGATCGTGTCGGGCGCAAGGCCACGCTGGTGGCAGCACTGCTGACGATGGGCATTTCCACCGTGGCGATCGGGCT GCTGCCCAGCTACGCGCAGATCGGCGTGTTCGCGCCGTTGCTGCTGGCGCTGTGCCGGTTCGGCCAGGGGTTGGGCCTGG GCGGTGAGTGGGGTGGGGCGGTGCTGCTTGCGACCGAAAACGCGCCACCCGGCAAGCGCGTGTGGTACGGCATGTTCCCG CAATTGGGGGCGCCGCTGGGCTTTTTGCTCTCCACCGGCACCTTTCTGGGCATGGGTGCGCTGCTGGACGATGCGCAGTT CATGCGCTGGGGCTGGCGCGTCCCTTTCCTGGCCAGCGCCGCGTTGGTGCTCACCGGTCTGTGGGTGCGCCTGAGCATCA CCGAAACCCCGGACTTCCAGAAAGCCCTGGATCGCAACACCCGTGTGCGGCTGCCGCTGGGCACGGTGATTACTCAGCAC TGGCCGGCACTGATCATCGGCACCTTGGGCGCGTTTGCAACGTTCGTGTTGTTCTACCTGATGACGGTGTTTGCGCTGGG CTACGGCACCAAGACGTTGGGCTACGACAAGGAGCAGTTCCTGCTGCTGCAGATGGCCGGCATCGTGTTTTTCGCGCTTG GGATTCCGATCTCAGCCAAGTTCGGCGACCGCCACGGCGCGCCGCTGGCAATGATGCTGGCCAGCGTGGCGATCGTGGCC TTCGGCCTGGCGTTCGCGCCGTTGTTCCAGGCCAATCATCCGCTGCAGGTGCTGGCGTTTTTGTCGCTGGGGTTTTTTTT CATGGGCCTGACTTACGGCCCGTGTGGCACATTGCTGGCCGAGTTGTACCCCACCGAAGTGCGTTACACCGGCGCGTCGT TGTCGTTCAATTTGGCCAGCATCCTGGGCGCGGCACCGGCACCGTATGTGGCCACCCAACTGGCCGCACGCTACGGCGTG CAGGCGGTAGGTTATTACCTCGGCGGTGCGGCGGTGTTGAGCCTGTTTGCGTTGATGCTGGCACGTCGATCGCGGCGCTG A
Upstream 100 bases:
>100_bases TTCGGTAACGCATGCAACTTTTGCGGGCTGGCGGAGGCTGCGCAACGCCCAGGTGTGATCTGCGAGAATCGGCCGTCTTT CCTATGGATGCCGATCCTCG
Downstream 100 bases:
>100_bases GGTAGGCGCGCGTCTGAGCATCTGAGCGCTTGAGTGTGACTGCAACGCCGGTGAAGTCTGGTCGCGCGCAAGCGCGCTCC TACCAGGCTGCTTGTTCTGA
Product: metabolite transport protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 426; Mature: 425
Protein sequence:
>426_residues MTAATPLATPINSPARVLFASLIGTTIEFFDFYIYATAAVLVFPTLFFPAGDGGAAMLQSLATFAVAFIARPVGSAVFGH FGDRVGRKATLVAALLTMGISTVAIGLLPSYAQIGVFAPLLLALCRFGQGLGLGGEWGGAVLLATENAPPGKRVWYGMFP QLGAPLGFLLSTGTFLGMGALLDDAQFMRWGWRVPFLASAALVLTGLWVRLSITETPDFQKALDRNTRVRLPLGTVITQH WPALIIGTLGAFATFVLFYLMTVFALGYGTKTLGYDKEQFLLLQMAGIVFFALGIPISAKFGDRHGAPLAMMLASVAIVA FGLAFAPLFQANHPLQVLAFLSLGFFFMGLTYGPCGTLLAELYPTEVRYTGASLSFNLASILGAAPAPYVATQLAARYGV QAVGYYLGGAAVLSLFALMLARRSRR
Sequences:
>Translated_426_residues MTAATPLATPINSPARVLFASLIGTTIEFFDFYIYATAAVLVFPTLFFPAGDGGAAMLQSLATFAVAFIARPVGSAVFGH FGDRVGRKATLVAALLTMGISTVAIGLLPSYAQIGVFAPLLLALCRFGQGLGLGGEWGGAVLLATENAPPGKRVWYGMFP QLGAPLGFLLSTGTFLGMGALLDDAQFMRWGWRVPFLASAALVLTGLWVRLSITETPDFQKALDRNTRVRLPLGTVITQH WPALIIGTLGAFATFVLFYLMTVFALGYGTKTLGYDKEQFLLLQMAGIVFFALGIPISAKFGDRHGAPLAMMLASVAIVA FGLAFAPLFQANHPLQVLAFLSLGFFFMGLTYGPCGTLLAELYPTEVRYTGASLSFNLASILGAAPAPYVATQLAARYGV QAVGYYLGGAAVLSLFALMLARRSRR >Mature_425_residues TAATPLATPINSPARVLFASLIGTTIEFFDFYIYATAAVLVFPTLFFPAGDGGAAMLQSLATFAVAFIARPVGSAVFGHF GDRVGRKATLVAALLTMGISTVAIGLLPSYAQIGVFAPLLLALCRFGQGLGLGGEWGGAVLLATENAPPGKRVWYGMFPQ LGAPLGFLLSTGTFLGMGALLDDAQFMRWGWRVPFLASAALVLTGLWVRLSITETPDFQKALDRNTRVRLPLGTVITQHW PALIIGTLGAFATFVLFYLMTVFALGYGTKTLGYDKEQFLLLQMAGIVFFALGIPISAKFGDRHGAPLAMMLASVAIVAF GLAFAPLFQANHPLQVLAFLSLGFFFMGLTYGPCGTLLAELYPTEVRYTGASLSFNLASILGAAPAPYVATQLAARYGVQ AVGYYLGGAAVLSLFALMLARRSRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Escherichia coli, GI1789941, Length=423, Percent_Identity=59.5744680851064, Blast_Score=431, Evalue=1e-122, Organism=Escherichia coli, GI1788292, Length=426, Percent_Identity=33.3333333333333, Blast_Score=222, Evalue=3e-59, Organism=Escherichia coli, GI1790550, Length=410, Percent_Identity=30.4878048780488, Blast_Score=199, Evalue=2e-52, Organism=Escherichia coli, GI1788942, Length=414, Percent_Identity=28.743961352657, Blast_Score=144, Evalue=8e-36, Organism=Escherichia coli, GI87082404, Length=424, Percent_Identity=26.4150943396226, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI87082231, Length=241, Percent_Identity=26.1410788381743, Blast_Score=67, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004736 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR005828 - InterPro: IPR005829 [H]
Pfam domain/function: PF07690 MFS_1; PF00083 Sugar_tr [H]
EC number: NA
Molecular weight: Translated: 45189; Mature: 45058
Theoretical pI: Translated: 9.90; Mature: 9.90
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAATPLATPINSPARVLFASLIGTTIEFFDFYIYATAAVLVFPTLFFPAGDGGAAMLQS CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH LATFAVAFIARPVGSAVFGHFGDRVGRKATLVAALLTMGISTVAIGLLPSYAQIGVFAPL HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH LLALCRFGQGLGLGGEWGGAVLLATENAPPGKRVWYGMFPQLGAPLGFLLSTGTFLGMGA HHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCHHHCCCHHHHHHCCHHHHHHH LLDDAQFMRWGWRVPFLASAALVLTGLWVRLSITETPDFQKALDRNTRVRLPLGTVITQH HHHHHHHHHHCCCCHHHHHHHHHHHHHHEEEEECCCCCHHHHHCCCCEEECCHHHHHHHH WPALIIGTLGAFATFVLFYLMTVFALGYGTKTLGYDKEQFLLLQMAGIVFFALGIPISAK HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEC FGDRHGAPLAMMLASVAIVAFGLAFAPLFQANHPLQVLAFLSLGFFFMGLTYGPCGTLLA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH ELYPTEVRYTGASLSFNLASILGAAPAPYVATQLAARYGVQAVGYYLGGAAVLSLFALML HHCCCCEEEECCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ARRSRR HHHCCC >Mature Secondary Structure TAATPLATPINSPARVLFASLIGTTIEFFDFYIYATAAVLVFPTLFFPAGDGGAAMLQS CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH LATFAVAFIARPVGSAVFGHFGDRVGRKATLVAALLTMGISTVAIGLLPSYAQIGVFAPL HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH LLALCRFGQGLGLGGEWGGAVLLATENAPPGKRVWYGMFPQLGAPLGFLLSTGTFLGMGA HHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCHHHCCCHHHHHHCCHHHHHHH LLDDAQFMRWGWRVPFLASAALVLTGLWVRLSITETPDFQKALDRNTRVRLPLGTVITQH HHHHHHHHHHCCCCHHHHHHHHHHHHHHEEEEECCCCCHHHHHCCCCEEECCHHHHHHHH WPALIIGTLGAFATFVLFYLMTVFALGYGTKTLGYDKEQFLLLQMAGIVFFALGIPISAK HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEC FGDRHGAPLAMMLASVAIVAFGLAFAPLFQANHPLQVLAFLSLGFFFMGLTYGPCGTLLA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH ELYPTEVRYTGASLSFNLASILGAAPAPYVATQLAARYGVQAVGYYLGGAAVLSLFALML HHCCCCEEEECCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ARRSRR HHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]