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The map label for this gene is glxA [H]

Identifier: 66768073

GI number: 66768073

Start: 2125358

End: 2126359

Strand: Reverse

Name: glxA [H]

Synonym: XC_1752

Alternate gene names: 66768073

Gene position: 2126359-2125358 (Counterclockwise)

Preceding gene: 66768075

Following gene: 66768071

Centisome position: 41.3

GC content: 65.97

Gene sequence:

>1002_bases
ATGCGCGCGCAACGTTCAGTCCCTCCTAGCCCTGCGCCGATCTCGGTCGTGGTGGTGGCGCCAGCGGGCATCAGTCCCTT
TCATCTGTCGGTGCCGATGATGATCTTCGACCTGCAGCCGGACGATCGCCCGCTGTTTACGCTGCGCATCGCCGCCGAAG
ACACGCGTGTCGCGCTGGCCGGAGGCCAAGTGGGCGTCACGCCGGACGGCGACCTGAGCCTGCTGGATCAGGCGGAGGTG
CTCATCGTTCCCGGCTGGGCCGATCTGGACCGTGCTCCCAGCGCCGCACTGCGCGCCGCGCTGGTCGCGGCGACTCAGCG
CGGCGCGCACGTGGTGGGCCTTTGCTACGGTGCCTATGCGCTGGCTTATGCGGGCCTGCTGGATGGAAAGCTGGCTTCGA
CGCATTGGCATGCCGAGGCCGATTTCCACCACCGCTTTCCGCGCGTTCGGCTGGACATGAATGCGCTTTACGTCGATGAG
CAGCGCATCGTGACCTCGGCAGGAACCGGTGCGGCGCTGGATTGCTGCATGTATCTGGTGCGCAAGCTGTGTGGCGCGCG
CCAGGCCAATGCGATCGCACGCATGATGGTGCTGCCGCAGCATCGCGACGGTGGCCAGGCGCAGTACATCGATCAGCCCG
TGCCCGCCTCGCCACAGGATGCGGCACTGAGCCGGCTGCTGGACTTCATGCGCGCGGATCTGCAGCAGGATCATGCGCTG
GATGCACTGGCCGAGCGTGTGGCGATGAGCCGACGCTCGTTCACCCGCCGCTTCCACAAGGCCACCGGCATGACCGTGGG
TGAATGGCTGGGCGCCGAACGCCTGCGGCGTGCCAAGGATCTGCTCGAATCCACCGCGCTGTCGATCGAGCAGGTGGCCG
AACAATCCGGTTACAAAAGCGCAGTGTCGTTCCGGCAGCGCTTCAACCAGGCATTCCAGACCAGCCCGCGCGAATGGCGC
AAGCGATTCACCCTGCTAGAGCAGGAATCGTTGCGGGTTTGA

Upstream 100 bases:

>100_bases
GCAGCGGTTGATGTCGCTTCCGAAACCCACCGCTACAGCTTGACGGCGACACCCTCGCACCGATACTGGCCTGCGAGACC
AACATCGATGAGATCGGGCC

Downstream 100 bases:

>100_bases
ACAAGGCGTTTTCTGCGCATCGTCATGCGTCGCGTGACACGAATGACGCGCAAAAAAAAGCGCCGGCAACTGCATGCGAG
CGCTTTTCAAATCAGAGCGT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MRAQRSVPPSPAPISVVVVAPAGISPFHLSVPMMIFDLQPDDRPLFTLRIAAEDTRVALAGGQVGVTPDGDLSLLDQAEV
LIVPGWADLDRAPSAALRAALVAATQRGAHVVGLCYGAYALAYAGLLDGKLASTHWHAEADFHHRFPRVRLDMNALYVDE
QRIVTSAGTGAALDCCMYLVRKLCGARQANAIARMMVLPQHRDGGQAQYIDQPVPASPQDAALSRLLDFMRADLQQDHAL
DALAERVAMSRRSFTRRFHKATGMTVGEWLGAERLRRAKDLLESTALSIEQVAEQSGYKSAVSFRQRFNQAFQTSPREWR
KRFTLLEQESLRV

Sequences:

>Translated_333_residues
MRAQRSVPPSPAPISVVVVAPAGISPFHLSVPMMIFDLQPDDRPLFTLRIAAEDTRVALAGGQVGVTPDGDLSLLDQAEV
LIVPGWADLDRAPSAALRAALVAATQRGAHVVGLCYGAYALAYAGLLDGKLASTHWHAEADFHHRFPRVRLDMNALYVDE
QRIVTSAGTGAALDCCMYLVRKLCGARQANAIARMMVLPQHRDGGQAQYIDQPVPASPQDAALSRLLDFMRADLQQDHAL
DALAERVAMSRRSFTRRFHKATGMTVGEWLGAERLRRAKDLLESTALSIEQVAEQSGYKSAVSFRQRFNQAFQTSPREWR
KRFTLLEQESLRV
>Mature_333_residues
MRAQRSVPPSPAPISVVVVAPAGISPFHLSVPMMIFDLQPDDRPLFTLRIAAEDTRVALAGGQVGVTPDGDLSLLDQAEV
LIVPGWADLDRAPSAALRAALVAATQRGAHVVGLCYGAYALAYAGLLDGKLASTHWHAEADFHHRFPRVRLDMNALYVDE
QRIVTSAGTGAALDCCMYLVRKLCGARQANAIARMMVLPQHRDGGQAQYIDQPVPASPQDAALSRLLDFMRADLQQDHAL
DALAERVAMSRRSFTRRFHKATGMTVGEWLGAERLRRAKDLLESTALSIEQVAEQSGYKSAVSFRQRFNQAFQTSPREWR
KRFTLLEQESLRV

Specific function: Regulatory Protein For The Xylbafghr Operon. [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789993, Length=104, Percent_Identity=31.7307692307692, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36624; Mature: 36624

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAQRSVPPSPAPISVVVVAPAGISPFHLSVPMMIFDLQPDDRPLFTLRIAAEDTRVALA
CCCCCCCCCCCCCEEEEEEECCCCCCEEEECCEEEEECCCCCCCEEEEEEECCCCEEEEE
GGQVGVTPDGDLSLLDQAEVLIVPGWADLDRAPSAALRAALVAATQRGAHVVGLCYGAYA
CCEECCCCCCCCCEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHH
LAYAGLLDGKLASTHWHAEADFHHRFPRVRLDMNALYVDEQRIVTSAGTGAALDCCMYLV
HHHHHHHCCCCCCCCCCCCCHHHHCCCCEEEECCEEEECCHHHEECCCCCHHHHHHHHHH
RKLCGARQANAIARMMVLPQHRDGGQAQYIDQPVPASPQDAALSRLLDFMRADLQQDHAL
HHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
DALAERVAMSRRSFTRRFHKATGMTVGEWLGAERLRRAKDLLESTALSIEQVAEQSGYKS
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
AVSFRQRFNQAFQTSPREWRKRFTLLEQESLRV
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRAQRSVPPSPAPISVVVVAPAGISPFHLSVPMMIFDLQPDDRPLFTLRIAAEDTRVALA
CCCCCCCCCCCCCEEEEEEECCCCCCEEEECCEEEEECCCCCCCEEEEEEECCCCEEEEE
GGQVGVTPDGDLSLLDQAEVLIVPGWADLDRAPSAALRAALVAATQRGAHVVGLCYGAYA
CCEECCCCCCCCCEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHH
LAYAGLLDGKLASTHWHAEADFHHRFPRVRLDMNALYVDEQRIVTSAGTGAALDCCMYLV
HHHHHHHCCCCCCCCCCCCCHHHHCCCCEEEECCEEEECCHHHEECCCCCHHHHHHHHHH
RKLCGARQANAIARMMVLPQHRDGGQAQYIDQPVPASPQDAALSRLLDFMRADLQQDHAL
HHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
DALAERVAMSRRSFTRRFHKATGMTVGEWLGAERLRRAKDLLESTALSIEQVAEQSGYKS
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
AVSFRQRFNQAFQTSPREWRKRFTLLEQESLRV
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]