| Definition | Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome. |
|---|---|
| Accession | NC_007086 |
| Length | 5,148,708 |
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The map label for this gene is thrS
Identifier: 66767974
GI number: 66767974
Start: 1985330
End: 1987240
Strand: Direct
Name: thrS
Synonym: XC_1650
Alternate gene names: 66767974
Gene position: 1985330-1987240 (Clockwise)
Preceding gene: 66767972
Following gene: 66767975
Centisome position: 38.56
GC content: 63.27
Gene sequence:
>1911_bases TTGCCCATGATCACCATTACGCTTCCCGACGGCAGCCGCCGCGAATTCGATGCTCCCGTGTCCGTCATGCAGGTCGCCCA GTCGATCGGCGCCGGCCTGGCCAAGGCCACCATCGCCGGCCAGGTGGACGGCCAGCTGGTCGACGCCAGCGACCTCATCG AACATGACGCCAGCCTGCGCATCATCACCGCCAAGGACGCCGAAGGCGTGGAGATCATCCGCCACTCCTGCGCCCACCTG GTCGGCCATGCGGTCAAGCAGCTGTACCCGGACGTCAAGATGGTGATCGGCCCGGTGATTGCCGAAGGCTTCTATTACGA CATCTACAGCGAGCGCCCGTTCACGCCGGAAGACATGGCGGCGATCGAGCAACGCATGCAGCAACTGATCGCGCAGGACT ACGACGTGATCAAGAAGGTCACCCCGCGCGCCGAGGTGATTGAGGTGTTCGCCCAGCGCGGTGAGGAGTACAAGCTGCGC CTGATTGAGGACATGTCCGACGACATCACCGCGATGGGCCTGTACTACCACCAGGAATACGTGGACATGTGCCGCGGCCC GCACGTGCCCAACACGCGCTTCCTCAAGGCCTTCAAGCTGACGCGCATCTCCGGCGCCTACTGGCGTGGCGATGCCAAGA ACGAGCAGCTGCAGCGCATCTACGGCACCGCCTGGGCCGACAAGAAGCAGCTCGACGCCTACATCCTGCGCATGGAAGAA GCCGACAAGCGCGACCACCGCAAGATCGGCAAGGCACAGGACCTGTTCCACCTGCAGGAAGAGGCCCCGGGCCTGGTGTT CTGGCACCCCAAGGGCTGGTCGCTATGGCAGGTGGTCGAGCAATACATGCGCAAGGTCTACCGCGACAGCGGCTATGGCG AGGTGCGTTGCCCGCAGATCCTGGACGTGTCGCTGTGGCAGAAATCCGGCCACTGGGACAACTACCAGGACGCGATGTTC TTCACCGAATCGGAGAAGCGCACCTACGCAGTCAAGCCGATGAACTGCCCCGGCCACGTGCAGGTGTTCAATCAGGGCCT GCACAGTTACCGCGACCTGCCGATCCGCTACGGTGAGTTCGGCGCCTGCCACCGTAACGAGCCCTCCGGCGCGCTGCACG GCATCCTGCGCGTGCGTGGCTTCACCCAGGACGACGGGCACGTGTTCTGCCTGGAATCGCAGATCGAAGCCGAAGTCACC GCCTTCCATCAGCAGGCGCTGGCGGTCTATACCGCCTTCGGTTTCGACGACATCCAAATCAAGATCGCGCTGCGCCCGGA AAAGCGCCTCGGCGACGATGCGACCTGGGACAAGGCCGAGGCCGCGCTGCGCAGCGCGCTGGGCGTATGCGGCGTGGAAT GGCAGGAGCTGCCGGGCGAGGGCGCCTTCTATGGCCCGAAGATCGAGTACCACCTCAAGGATGCGATCGGCCGCACCTGG CAACTGGGTACGATGCAGGTCGACTTCATGATGCCTGGCCGCCTCGGCGCCGAGTACGTGGACGAGCACAGCCAGAAGAA GCATCCGGTCATGCTGCATCGGGCCATCGTCGGTTCGATGGAGCGTTTCATCGGCATTTTGATCGAGCACCACGCCGGCG CATTCCCGGCCTGGCTGGCTCCGGTCCAGGTCGTTGTCGCCAACATCACCGACGCTCAGGCTGAATATGTGGACTCGGTT CGGAAAACCCTTGCAAATCAAGGCTTCCGTGTCAGCGCCGATTTGCGTAACGAGAAGATCGGTTATAAGATTCGCGAGCA TACGCTGCAACGCGTGCCGTATTTGCTCGTGGTTGGTGACCGCGAGAAGGAAAATGGCGCGGTCGCCGTGCGGACGCGTT CGGGAGAGGACCTCGGAACCATGACGGTTTCGGCCTTCATCGAACGCCTGCAGGCAGAGCAGGCAGCGTGA
Upstream 100 bases:
>100_bases TTGCGCCTGACTTCTTCGCCTGACCCTTTCGAGCCTGTCCCCGCGTGGACGGATCTCTCACTGCAGCAGCCACCGGCTGC GGCCAGACCAGACCCTATCG
Downstream 100 bases:
>100_bases GCCAACCCCGGCCGGTCTGGATGATCCGGATGCGCCGGTTCGATTCCCCTGGGAGATTGCAATATCAGTACCCCTGACAA CAAACAGAACCGCAAGAACC
Product: threonyl-tRNA synthetase
Products: NA
Alternate protein names: Threonine--tRNA ligase; ThrRS
Number of amino acids: Translated: 636; Mature: 635
Protein sequence:
>636_residues MPMITITLPDGSRREFDAPVSVMQVAQSIGAGLAKATIAGQVDGQLVDASDLIEHDASLRIITAKDAEGVEIIRHSCAHL VGHAVKQLYPDVKMVIGPVIAEGFYYDIYSERPFTPEDMAAIEQRMQQLIAQDYDVIKKVTPRAEVIEVFAQRGEEYKLR LIEDMSDDITAMGLYYHQEYVDMCRGPHVPNTRFLKAFKLTRISGAYWRGDAKNEQLQRIYGTAWADKKQLDAYILRMEE ADKRDHRKIGKAQDLFHLQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSGYGEVRCPQILDVSLWQKSGHWDNYQDAMF FTESEKRTYAVKPMNCPGHVQVFNQGLHSYRDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVFCLESQIEAEVT AFHQQALAVYTAFGFDDIQIKIALRPEKRLGDDATWDKAEAALRSALGVCGVEWQELPGEGAFYGPKIEYHLKDAIGRTW QLGTMQVDFMMPGRLGAEYVDEHSQKKHPVMLHRAIVGSMERFIGILIEHHAGAFPAWLAPVQVVVANITDAQAEYVDSV RKTLANQGFRVSADLRNEKIGYKIREHTLQRVPYLLVVGDREKENGAVAVRTRSGEDLGTMTVSAFIERLQAEQAA
Sequences:
>Translated_636_residues MPMITITLPDGSRREFDAPVSVMQVAQSIGAGLAKATIAGQVDGQLVDASDLIEHDASLRIITAKDAEGVEIIRHSCAHL VGHAVKQLYPDVKMVIGPVIAEGFYYDIYSERPFTPEDMAAIEQRMQQLIAQDYDVIKKVTPRAEVIEVFAQRGEEYKLR LIEDMSDDITAMGLYYHQEYVDMCRGPHVPNTRFLKAFKLTRISGAYWRGDAKNEQLQRIYGTAWADKKQLDAYILRMEE ADKRDHRKIGKAQDLFHLQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSGYGEVRCPQILDVSLWQKSGHWDNYQDAMF FTESEKRTYAVKPMNCPGHVQVFNQGLHSYRDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVFCLESQIEAEVT AFHQQALAVYTAFGFDDIQIKIALRPEKRLGDDATWDKAEAALRSALGVCGVEWQELPGEGAFYGPKIEYHLKDAIGRTW QLGTMQVDFMMPGRLGAEYVDEHSQKKHPVMLHRAIVGSMERFIGILIEHHAGAFPAWLAPVQVVVANITDAQAEYVDSV RKTLANQGFRVSADLRNEKIGYKIREHTLQRVPYLLVVGDREKENGAVAVRTRSGEDLGTMTVSAFIERLQAEQAA >Mature_635_residues PMITITLPDGSRREFDAPVSVMQVAQSIGAGLAKATIAGQVDGQLVDASDLIEHDASLRIITAKDAEGVEIIRHSCAHLV GHAVKQLYPDVKMVIGPVIAEGFYYDIYSERPFTPEDMAAIEQRMQQLIAQDYDVIKKVTPRAEVIEVFAQRGEEYKLRL IEDMSDDITAMGLYYHQEYVDMCRGPHVPNTRFLKAFKLTRISGAYWRGDAKNEQLQRIYGTAWADKKQLDAYILRMEEA DKRDHRKIGKAQDLFHLQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSGYGEVRCPQILDVSLWQKSGHWDNYQDAMFF TESEKRTYAVKPMNCPGHVQVFNQGLHSYRDLPIRYGEFGACHRNEPSGALHGILRVRGFTQDDGHVFCLESQIEAEVTA FHQQALAVYTAFGFDDIQIKIALRPEKRLGDDATWDKAEAALRSALGVCGVEWQELPGEGAFYGPKIEYHLKDAIGRTWQ LGTMQVDFMMPGRLGAEYVDEHSQKKHPVMLHRAIVGSMERFIGILIEHHAGAFPAWLAPVQVVVANITDAQAEYVDSVR KTLANQGFRVSADLRNEKIGYKIREHTLQRVPYLLVVGDREKENGAVAVRTRSGEDLGTMTVSAFIERLQAEQAA
Specific function: Thrs Is Also A Translational Repressor Protein, It Controls The Translation Of Its Own Gene By Binding To Its mRNA. [C]
COG id: COG0441
COG function: function code J; Threonyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family
Homologues:
Organism=Homo sapiens, GI38202255, Length=632, Percent_Identity=39.2405063291139, Blast_Score=467, Evalue=1e-131, Organism=Homo sapiens, GI38570111, Length=633, Percent_Identity=37.914691943128, Blast_Score=456, Evalue=1e-128, Organism=Homo sapiens, GI20070344, Length=648, Percent_Identity=35.1851851851852, Blast_Score=390, Evalue=1e-108, Organism=Escherichia coli, GI1788013, Length=631, Percent_Identity=61.4896988906498, Blast_Score=835, Evalue=0.0, Organism=Escherichia coli, GI1786392, Length=157, Percent_Identity=24.8407643312102, Blast_Score=66, Evalue=8e-12, Organism=Caenorhabditis elegans, GI71984192, Length=636, Percent_Identity=38.2075471698113, Blast_Score=473, Evalue=1e-133, Organism=Caenorhabditis elegans, GI71984184, Length=636, Percent_Identity=38.2075471698113, Blast_Score=472, Evalue=1e-133, Organism=Saccharomyces cerevisiae, GI6322112, Length=629, Percent_Identity=37.5198728139905, Blast_Score=445, Evalue=1e-125, Organism=Saccharomyces cerevisiae, GI6322654, Length=413, Percent_Identity=35.8353510895884, Blast_Score=289, Evalue=1e-78, Organism=Drosophila melanogaster, GI24583842, Length=634, Percent_Identity=39.7476340694006, Blast_Score=487, Evalue=1e-137, Organism=Drosophila melanogaster, GI28574141, Length=634, Percent_Identity=39.7476340694006, Blast_Score=487, Evalue=1e-137, Organism=Drosophila melanogaster, GI24583839, Length=634, Percent_Identity=39.7476340694006, Blast_Score=487, Evalue=1e-137,
Paralogues:
None
Copy number: 700 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): SYT_XANC8 (Q4UW57)
Other databases:
- EMBL: CP000050 - RefSeq: YP_242736.1 - HSSP: P0A8M3 - ProteinModelPortal: Q4UW57 - SMR: Q4UW57 - STRING: Q4UW57 - GeneID: 3380199 - GenomeReviews: CP000050_GR - KEGG: xcb:XC_1650 - eggNOG: COG0441 - HOGENOM: HBG352811 - OMA: GFEYEVE - PhylomeDB: Q4UW57 - ProtClustDB: PRK00413 - BioCyc: XCAM314565:XC_1650-MONOMER - GO: GO:0005737 - HAMAP: MF_00184_B - InterPro: IPR002314 - InterPro: IPR006195 - InterPro: IPR004154 - InterPro: IPR012675 - InterPro: IPR004095 - InterPro: IPR012676 - InterPro: IPR002320 - InterPro: IPR018163 - InterPro: IPR012947 - Gene3D: G3DSA:3.40.50.800 - Gene3D: G3DSA:3.10.20.30 - PRINTS: PR01047 - SMART: SM00863 - TIGRFAMs: TIGR00418
Pfam domain/function: PF03129 HGTP_anticodon; PF02824 TGS; PF00587 tRNA-synt_2b; PF07973 tRNA_SAD; SSF52954 Anticodon_bd; SSF81271 TGS-like; SSF55186 Thr/Ala-tRNA-synth_IIc_edit
EC number: =6.1.1.3
Molecular weight: Translated: 72003; Mature: 71872
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: PS50862 AA_TRNA_LIGASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPMITITLPDGSRREFDAPVSVMQVAQSIGAGLAKATIAGQVDGQLVDASDLIEHDASLR CCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCHHHHHEECCCCCCEECHHHHHHCCCCEE IITAKDAEGVEIIRHSCAHLVGHAVKQLYPDVKMVIGPVIAEGFYYDIYSERPFTPEDMA EEEECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCHHHHH AIEQRMQQLIAQDYDVIKKVTPRAEVIEVFAQRGEEYKLRLIEDMSDDITAMGLYYHQEY HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEHHHHCCCCCHHHHHHHHHHHH VDMCRGPHVPNTRFLKAFKLTRISGAYWRGDAKNEQLQRIYGTAWADKKQLDAYILRMEE HHHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH ADKRDHRKIGKAQDLFHLQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSGYGEVRCPQI HCCHHHHHCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEECCHH LDVSLWQKSGHWDNYQDAMFFTESEKRTYAVKPMNCPGHVQVFNQGLHSYRDLPIRYGEF HHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCC GACHRNEPSGALHGILRVRGFTQDDGHVFCLESQIEAEVTAFHQQALAVYTAFGFDDIQI CCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHEECCCEEEE KIALRPEKRLGDDATWDKAEAALRSALGVCGVEWQELPGEGAFYGPKIEYHLKDAIGRTW EEEECCHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCEECCEEEEEEHHHCCCEE QLGTMQVDFMMPGRLGAEYVDEHSQKKHPVMLHRAIVGSMERFIGILIEHHAGAFPAWLA EECEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH PVQVVVANITDAQAEYVDSVRKTLANQGFRVSADLRNEKIGYKIREHTLQRVPYLLVVGD HHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCEEEEECC REKENGAVAVRTRSGEDLGTMTVSAFIERLQAEQAA CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PMITITLPDGSRREFDAPVSVMQVAQSIGAGLAKATIAGQVDGQLVDASDLIEHDASLR CEEEEECCCCCCCCCCCCHHHHHHHHHHCCCHHHHHEECCCCCCEECHHHHHHCCCCEE IITAKDAEGVEIIRHSCAHLVGHAVKQLYPDVKMVIGPVIAEGFYYDIYSERPFTPEDMA EEEECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCCCCCHHHHH AIEQRMQQLIAQDYDVIKKVTPRAEVIEVFAQRGEEYKLRLIEDMSDDITAMGLYYHQEY HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEHHHHCCCCCHHHHHHHHHHHH VDMCRGPHVPNTRFLKAFKLTRISGAYWRGDAKNEQLQRIYGTAWADKKQLDAYILRMEE HHHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH ADKRDHRKIGKAQDLFHLQEEAPGLVFWHPKGWSLWQVVEQYMRKVYRDSGYGEVRCPQI HCCHHHHHCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEECCHH LDVSLWQKSGHWDNYQDAMFFTESEKRTYAVKPMNCPGHVQVFNQGLHSYRDLPIRYGEF HHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCC GACHRNEPSGALHGILRVRGFTQDDGHVFCLESQIEAEVTAFHQQALAVYTAFGFDDIQI CCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHEECCCEEEE KIALRPEKRLGDDATWDKAEAALRSALGVCGVEWQELPGEGAFYGPKIEYHLKDAIGRTW EEEECCHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCEECCEEEEEEHHHCCCEE QLGTMQVDFMMPGRLGAEYVDEHSQKKHPVMLHRAIVGSMERFIGILIEHHAGAFPAWLA EECEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH PVQVVVANITDAQAEYVDSVRKTLANQGFRVSADLRNEKIGYKIREHTLQRVPYLLVVGD HHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCEEEEECC REKENGAVAVRTRSGEDLGTMTVSAFIERLQAEQAA CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA