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The map label for this gene is virD4 [H]

Identifier: 66767954

GI number: 66767954

Start: 1956087

End: 1957760

Strand: Direct

Name: virD4 [H]

Synonym: XC_1630

Alternate gene names: 66767954

Gene position: 1956087-1957760 (Clockwise)

Preceding gene: 66767953

Following gene: 66767955

Centisome position: 37.99

GC content: 59.68

Gene sequence:

>1674_bases
GTGTCCAAGCTCAAAATCGCCGCAATCGCCACCGTGGTGACGATGCTCATCGGGTATTGCCTGTCGGGCTACCTGACGTT
GCTGCTATTGCGGCTGGATACCAAGCTGTACGCGTGGGACACCTACTATCGCTACGTCAGCGCCATGGGTCTTCCGGAGG
TTGCGCCGTACGTGACCAAGATCAAGTTGGCTGGGGCGTTCGGTTTCGGCCTGCCGGGGATCGTCTGGGCAATCGGCATG
GTGCTGCTGGTCAAGCCCAAGCAGAAGGCGCTGCATGGCGACGCGCGCTTTGCGGGCGCTGCCGACCTCTCCAAGCATGG
GCTGTTCAAACCAAGCCCGAATGGCATCGTAGTCGGCAAGTTCAATGGCAAGTTGGTCCGGCTCAGTGGCCAGCAGTTCG
TCATCCTCGCCGCGCCGACGCGCTCCGGTAAGGGCGTGGGCGTGGTCATTCCGAATCTGCTCGAGTACCAGGAATCGGTG
GTGGTTCTGGACATCAAGCAGGAAAACTTCGATCTGACCAGCGGCTGGCGTGCCAGCCAGGGGCACGAGGTTTTTCTCTT
CAATCCGTTTGCGGAAGATCGCCGCACGCACCGCTGGAACCCGCTCACCTACGTGTCGGCCGATCCGGCCTTCCGCGTCT
CGGATCTGATGAGCATCGCCGCGATGCTGTACCCGGACGGTTCCGACGATCAGAAATTCTGGGTCAGCCAGGCGCGCAAC
GCGTTCATGGCGTTCTCTCTTTATCTGTTCGAAAACTGGGACGAGGAGCTGTCACTGGGCTTCCCGGGCGGGGCAGGGGC
GCCTACGTTGGGCGGAATCTACCGTCTCTCGTCGGGTGACGGCACCGACCTCAAGAAATATCTGAAGTCGCTGTCCGAAC
GCAGGTTCCTCAGCAGCAACGCCAAGTCGGCGTTTGCCAACATGCTGTCACAGGCGGATGAGACCTTCGCCTCCATCATG
GGCACCCTGAAAGAGCCGCTCAACGCCTGGATCAATCCCGTTCTGGACGCTGCTACCAGCGCCGACGATTTCCTGCTGAC
GGATCTGCGCAAGAAGAAGATGACCATCTACATCGGCATCCAGCCCAACAAGCTGGCCGAGAGCCGCCTGATCATCAATC
TGCTTTTCAGCCAGATCATCAACCTCAACACCCGCGAACTACCCAAGGCCAACCCTGAGCTCAAATACCAGTGCCTGTTG
CTGATGGACGAGTTCACCTCGATCGGCAAGGTGGACATCATCTCCACTGCCGTGGCCTACATGGCCGGCTACAACATCCG
TCTGCTGCCCATCATCCAGAGCATGGCGCAGCTGGACGCCACCTACGGCAAGGACCTCTCGCGCACCATCATCACCAACC
ACGCCCTGCAGATCCTCTACGCCCCGCGTGAGCAGCAGGACGCGAATGACTACTCCGAGATGCTGGGGTACACCACCATC
AAGAAGAAGAACGTCACCAGAGGGCGTGAGACGACGCATAGCGTTTCCGAGGAGCGCCGGGCGCTGATGTTGCCGCAGGA
GCTCAAGGCCATGGGCAACGAGAAGGAAGTCTTCCTATACGAAGGAATCCCGCACCCGGTGAAGTGCGACAAGATCCGCT
ACTACGAAGACCGGTACTTCACTGTCCGGCTGTTGCCTAAGGTGGGCGTGGCGACCTTGACCATCAAATTTTGA

Upstream 100 bases:

>100_bases
GGTCGAAAGCGAAGGCGGTGGGCGCAAGTCCGACACGCTGGATCACAAGTCAACTATTCGTCGCTAAACGCTGACAGAAG
CAAGCCAGGGAGAAGGGCGC

Downstream 100 bases:

>100_bases
CTTGCACCACCTAACTCTTACAACGCATGGCAGGGAATGCTTGACTCATGTGCCTGTTAAGGGCAAAGTTATGTTTCGCT
ACAAGTCGTAAAAGTGCAGT

Product: VirD4 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 557; Mature: 556

Protein sequence:

>557_residues
MSKLKIAAIATVVTMLIGYCLSGYLTLLLLRLDTKLYAWDTYYRYVSAMGLPEVAPYVTKIKLAGAFGFGLPGIVWAIGM
VLLVKPKQKALHGDARFAGAADLSKHGLFKPSPNGIVVGKFNGKLVRLSGQQFVILAAPTRSGKGVGVVIPNLLEYQESV
VVLDIKQENFDLTSGWRASQGHEVFLFNPFAEDRRTHRWNPLTYVSADPAFRVSDLMSIAAMLYPDGSDDQKFWVSQARN
AFMAFSLYLFENWDEELSLGFPGGAGAPTLGGIYRLSSGDGTDLKKYLKSLSERRFLSSNAKSAFANMLSQADETFASIM
GTLKEPLNAWINPVLDAATSADDFLLTDLRKKKMTIYIGIQPNKLAESRLIINLLFSQIINLNTRELPKANPELKYQCLL
LMDEFTSIGKVDIISTAVAYMAGYNIRLLPIIQSMAQLDATYGKDLSRTIITNHALQILYAPREQQDANDYSEMLGYTTI
KKKNVTRGRETTHSVSEERRALMLPQELKAMGNEKEVFLYEGIPHPVKCDKIRYYEDRYFTVRLLPKVGVATLTIKF

Sequences:

>Translated_557_residues
MSKLKIAAIATVVTMLIGYCLSGYLTLLLLRLDTKLYAWDTYYRYVSAMGLPEVAPYVTKIKLAGAFGFGLPGIVWAIGM
VLLVKPKQKALHGDARFAGAADLSKHGLFKPSPNGIVVGKFNGKLVRLSGQQFVILAAPTRSGKGVGVVIPNLLEYQESV
VVLDIKQENFDLTSGWRASQGHEVFLFNPFAEDRRTHRWNPLTYVSADPAFRVSDLMSIAAMLYPDGSDDQKFWVSQARN
AFMAFSLYLFENWDEELSLGFPGGAGAPTLGGIYRLSSGDGTDLKKYLKSLSERRFLSSNAKSAFANMLSQADETFASIM
GTLKEPLNAWINPVLDAATSADDFLLTDLRKKKMTIYIGIQPNKLAESRLIINLLFSQIINLNTRELPKANPELKYQCLL
LMDEFTSIGKVDIISTAVAYMAGYNIRLLPIIQSMAQLDATYGKDLSRTIITNHALQILYAPREQQDANDYSEMLGYTTI
KKKNVTRGRETTHSVSEERRALMLPQELKAMGNEKEVFLYEGIPHPVKCDKIRYYEDRYFTVRLLPKVGVATLTIKF
>Mature_556_residues
SKLKIAAIATVVTMLIGYCLSGYLTLLLLRLDTKLYAWDTYYRYVSAMGLPEVAPYVTKIKLAGAFGFGLPGIVWAIGMV
LLVKPKQKALHGDARFAGAADLSKHGLFKPSPNGIVVGKFNGKLVRLSGQQFVILAAPTRSGKGVGVVIPNLLEYQESVV
VLDIKQENFDLTSGWRASQGHEVFLFNPFAEDRRTHRWNPLTYVSADPAFRVSDLMSIAAMLYPDGSDDQKFWVSQARNA
FMAFSLYLFENWDEELSLGFPGGAGAPTLGGIYRLSSGDGTDLKKYLKSLSERRFLSSNAKSAFANMLSQADETFASIMG
TLKEPLNAWINPVLDAATSADDFLLTDLRKKKMTIYIGIQPNKLAESRLIINLLFSQIINLNTRELPKANPELKYQCLLL
MDEFTSIGKVDIISTAVAYMAGYNIRLLPIIQSMAQLDATYGKDLSRTIITNHALQILYAPREQQDANDYSEMLGYTTIK
KKNVTRGRETTHSVSEERRALMLPQELKAMGNEKEVFLYEGIPHPVKCDKIRYYEDRYFTVRLLPKVGVATLTIKF

Specific function: Unknown

COG id: COG3505

COG function: function code U; Type IV secretory pathway, VirD4 components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virD4/traG family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003688 [H]

Pfam domain/function: PF02534 TraG [H]

EC number: NA

Molecular weight: Translated: 62151; Mature: 62020

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: PS00178 AA_TRNA_LIGASE_I ; PS00678 WD_REPEATS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKLKIAAIATVVTMLIGYCLSGYLTLLLLRLDTKLYAWDTYYRYVSAMGLPEVAPYVTK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHCCCCCCCCHHEE
IKLAGAFGFGLPGIVWAIGMVLLVKPKQKALHGDARFAGAADLSKHGLFKPSPNGIVVGK
EEEECCCCCCHHHHHHHHHHHEEECCHHHHHCCCCCCCCCCCHHHCCCCCCCCCCEEEEC
FNGKLVRLSGQQFVILAAPTRSGKGVGVVIPNLLEYQESVVVLDIKQENFDLTSGWRASQ
CCCEEEEECCCEEEEEEECCCCCCEEEEECCHHHCCCCCEEEEEEECCCCCCCCCCCCCC
GHEVFLFNPFAEDRRTHRWNPLTYVSADPAFRVSDLMSIAAMLYPDGSDDQKFWVSQARN
CCEEEEECCCHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC
AFMAFSLYLFENWDEELSLGFPGGAGAPTLGGIYRLSSGDGTDLKKYLKSLSERRFLSSN
HHHHEEEEEECCCCCCEECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCC
AKSAFANMLSQADETFASIMGTLKEPLNAWINPVLDAATSADDFLLTDLRKKKMTIYIGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEEEEE
QPNKLAESRLIINLLFSQIINLNTRELPKANPELKYQCLLLMDEFTSIGKVDIISTAVAY
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEHHHCCCCCHHHHHHHHHH
MAGYNIRLLPIIQSMAQLDATYGKDLSRTIITNHALQILYAPREQQDANDYSEMLGYTTI
HCCCCEEEHHHHHHHHHHHHHHCCCHHHHHHHCCEEEEEECCCCCCCHHHHHHHHCCCEE
KKKNVTRGRETTHSVSEERRALMLPQELKAMGNEKEVFLYEGIPHPVKCDKIRYYEDRYF
ECCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEECCCCCCCCCCCEEEECCCEE
TVRLLPKVGVATLTIKF
EEEEECCCCEEEEEEEC
>Mature Secondary Structure 
SKLKIAAIATVVTMLIGYCLSGYLTLLLLRLDTKLYAWDTYYRYVSAMGLPEVAPYVTK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHCCCCCCCCHHEE
IKLAGAFGFGLPGIVWAIGMVLLVKPKQKALHGDARFAGAADLSKHGLFKPSPNGIVVGK
EEEECCCCCCHHHHHHHHHHHEEECCHHHHHCCCCCCCCCCCHHHCCCCCCCCCCEEEEC
FNGKLVRLSGQQFVILAAPTRSGKGVGVVIPNLLEYQESVVVLDIKQENFDLTSGWRASQ
CCCEEEEECCCEEEEEEECCCCCCEEEEECCHHHCCCCCEEEEEEECCCCCCCCCCCCCC
GHEVFLFNPFAEDRRTHRWNPLTYVSADPAFRVSDLMSIAAMLYPDGSDDQKFWVSQARN
CCEEEEECCCHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC
AFMAFSLYLFENWDEELSLGFPGGAGAPTLGGIYRLSSGDGTDLKKYLKSLSERRFLSSN
HHHHEEEEEECCCCCCEECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCC
AKSAFANMLSQADETFASIMGTLKEPLNAWINPVLDAATSADDFLLTDLRKKKMTIYIGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEEEEE
QPNKLAESRLIINLLFSQIINLNTRELPKANPELKYQCLLLMDEFTSIGKVDIISTAVAY
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEHHHCCCCCHHHHHHHHHH
MAGYNIRLLPIIQSMAQLDATYGKDLSRTIITNHALQILYAPREQQDANDYSEMLGYTTI
HCCCCEEEHHHHHHHHHHHHHHCCCHHHHHHHCCEEEEEECCCCCCCHHHHHHHHCCCEE
KKKNVTRGRETTHSVSEERRALMLPQELKAMGNEKEVFLYEGIPHPVKCDKIRYYEDRYF
ECCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEECCCCCCCCCCCEEEECCCEE
TVRLLPKVGVATLTIKF
EEEEECCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3185501 [H]