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The map label for this gene is ppdD [C]

Identifier: 66767945

GI number: 66767945

Start: 1945495

End: 1946010

Strand: Direct

Name: ppdD [C]

Synonym: XC_1621

Alternate gene names: 66767945

Gene position: 1945495-1946010 (Clockwise)

Preceding gene: 66767944

Following gene: 66767946

Centisome position: 37.79

GC content: 56.01

Gene sequence:

>516_bases
ATGTTTTTCTGCCGTGCTCGCGGGTTCACGCTGGTTGAGTTGATGACCACGGTTGCGGTCGTTGCGATCGTGGCCGCTAT
CGGATACCCGAGTTTTCAAGGCGTCATTCGGTCGAATCGCGCTGTTACTGCAAATAATGAAGTGGTCGGGTTGCTTAACC
TCGCCAGGAGCGAAGCACTGCGTTCTGGCCAAAGTGGGGCGATCTGTGGAAGCAGTAACGGCACTGCCTGTGATGGGAGC
TGGGGCGGAGGGATCCTTGCATGGAGCGATGTCAATACAAATGGTGCATTGGATGGCGGAGAACCGGTCCTGCGCTACTG
GCTTGGCAATCCAAAGCTCGTTGTTCAAGGCCCGAGTAGCGGTCTAGTGGCCTTTGACGGCCGGGGACGCCGAATTTCTG
CTGCCGACCAGCAAATCACTGTGCGCCCGGATCAATGTGGCGGCCAGCAATTGATGCGAACGCTGCTCATCAATGCAGCT
GGGCAAGTCAGAAGTAGAAAGGATAACTGTCAATGA

Upstream 100 bases:

>100_bases
CTAACGTTCGTCGGTCAAGAGAGCCGCTTGTCGGTCGGGCGCTTGTCTTTACCGCTCTGGCCACTCATGCTCCTCAGTAT
TGACGCTGGGGAGCGTATTG

Downstream 100 bases:

>100_bases
GACAGCACGGCATTAGGCGGGAAGCATCTGGGTTTACATTGATTGAAGTATTGATAGCGATCATTGTTCTCGCGTTCGGG
CTGCTTGGCTTTGCACTGCT

Product: pre-pilin like leader sequence

Products: NA

Alternate protein names: Pre-Pilin Like Leader Sequence; Type IV Pilus Assembly Protein FimT; Fimbrial Pilin Related Signal Peptide Protein; Tfp Pilus Assembly Protein FimT; Pilus Assembly Protein; Type IV Pilin; Fimbrial Protein FimT; Prokaryotic N-Terminal Methylation Motif Domain Protein; Type 4 Fimbrial Biogenesis Protein FimU; Tfp Pilus Assembly Protein FimT-Like Protein; Type IV Fimbrial Fimt-Related Pilin; Methylation Site Containing Protein; Type-4 Fimbrial Pilin Related Protein

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MFFCRARGFTLVELMTTVAVVAIVAAIGYPSFQGVIRSNRAVTANNEVVGLLNLARSEALRSGQSGAICGSSNGTACDGS
WGGGILAWSDVNTNGALDGGEPVLRYWLGNPKLVVQGPSSGLVAFDGRGRRISAADQQITVRPDQCGGQQLMRTLLINAA
GQVRSRKDNCQ

Sequences:

>Translated_171_residues
MFFCRARGFTLVELMTTVAVVAIVAAIGYPSFQGVIRSNRAVTANNEVVGLLNLARSEALRSGQSGAICGSSNGTACDGS
WGGGILAWSDVNTNGALDGGEPVLRYWLGNPKLVVQGPSSGLVAFDGRGRRISAADQQITVRPDQCGGQQLMRTLLINAA
GQVRSRKDNCQ
>Mature_171_residues
MFFCRARGFTLVELMTTVAVVAIVAAIGYPSFQGVIRSNRAVTANNEVVGLLNLARSEALRSGQSGAICGSSNGTACDGS
WGGGILAWSDVNTNGALDGGEPVLRYWLGNPKLVVQGPSSGLVAFDGRGRRISAADQQITVRPDQCGGQQLMRTLLINAA
GQVRSRKDNCQ

Specific function: Not Yet Known. [C]

COG id: COG4970

COG function: function code NU; Tfp pilus assembly protein FimT

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17943; Mature: 17943

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFCRARGFTLVELMTTVAVVAIVAAIGYPSFQGVIRSNRAVTANNEVVGLLNLARSEAL
CEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEECCCCEEEHHHHHHHHHH
RSGQSGAICGSSNGTACDGSWGGGILAWSDVNTNGALDGGEPVLRYWLGNPKLVVQGPSS
HCCCCCCEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCEEEEECCCC
GLVAFDGRGRRISAADQQITVRPDQCGGQQLMRTLLINAAGQVRSRKDNCQ
CEEEECCCCCEEECCCCEEEECCCCCCHHHHHHHHHHHCCHHHHCCCCCCC
>Mature Secondary Structure
MFFCRARGFTLVELMTTVAVVAIVAAIGYPSFQGVIRSNRAVTANNEVVGLLNLARSEAL
CEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEECCCCEEEHHHHHHHHHH
RSGQSGAICGSSNGTACDGSWGGGILAWSDVNTNGALDGGEPVLRYWLGNPKLVVQGPSS
HCCCCCCEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCEEEEECCCC
GLVAFDGRGRRISAADQQITVRPDQCGGQQLMRTLLINAAGQVRSRKDNCQ
CEEEECCCCCEEECCCCEEEECCCCCCHHHHHHHHHHHCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA