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The map label for this gene is sodB [H]

Identifier: 66767939

GI number: 66767939

Start: 1937881

End: 1938459

Strand: Reverse

Name: sodB [H]

Synonym: XC_1615

Alternate gene names: 66767939

Gene position: 1938459-1937881 (Counterclockwise)

Preceding gene: 66767951

Following gene: 66767936

Centisome position: 37.65

GC content: 64.25

Gene sequence:

>579_bases
ATGCCGATCGAACACCTTGCTCTGCCCTACTCCCGCGCCGCCCTGGAGCCACATCTGTCGGCTGCGACAGTGGACGCCCA
CCATGGCGTGTGCCATCGCAGCGAGGTCGAACGGCTCAATGCGCGCATCGAAGGCAGCGAGTTTGCCGAGCTGATGCTGG
AAGAGATCATCGCGCAGGCGCAGGGCACGTTGTTCCAGCTTGCCGCGCAAGTGTGGAACCATAATTTCTATTGGCAGTGC
CTGCGCCCGCGCGGCGGCGGCGAACCCCTGGGCCGGCTGGCCGACAGCATCGCGGCATCGTTCGGCGACTTCGTGCACTT
CAAGCAGGAATTCAACCGCATCGCGTTCGGCACGGTGGGTTCGGGTTGGGTGTGGCTGGTGCAGCGCCCGGATGGCAGAT
TGGCCGTGGTGGCTACTCCGAATGCCTCCACGCCGCTGACCGGCCCGGACACCGCGCTGCTCGCCTGCGATCTGTGGGAA
CACGCCTACTACCTGGATCATCAGCAGGACCGCGCGCAGTACCTGGATGCGTTCTGGAAACTGATCAATTGGGACTTTGT
GGCCAGCCGTCTGCGCTGA

Upstream 100 bases:

>100_bases
GGCAGGCCCGACCGCCGGGTCGGATAGACTTCCGCAAAGGCGCGCATTGTAAGCCTTCAACGCGCCCTCTCGCCGGACTC
CCTTCGCTGCCCCGAACACC

Downstream 100 bases:

>100_bases
TGCGCGATGGCGCATGCTGAGAAATGCAGCGTCGAAGTGGCATCACTTACGTTGGGTGCTGCTCGCTCAACCAGCCTGGG
GCACCAACGCGCCAGGCGAT

Product: iron superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MPIEHLALPYSRAALEPHLSAATVDAHHGVCHRSEVERLNARIEGSEFAELMLEEIIAQAQGTLFQLAAQVWNHNFYWQC
LRPRGGGEPLGRLADSIAASFGDFVHFKQEFNRIAFGTVGSGWVWLVQRPDGRLAVVATPNASTPLTGPDTALLACDLWE
HAYYLDHQQDRAQYLDAFWKLINWDFVASRLR

Sequences:

>Translated_192_residues
MPIEHLALPYSRAALEPHLSAATVDAHHGVCHRSEVERLNARIEGSEFAELMLEEIIAQAQGTLFQLAAQVWNHNFYWQC
LRPRGGGEPLGRLADSIAASFGDFVHFKQEFNRIAFGTVGSGWVWLVQRPDGRLAVVATPNASTPLTGPDTALLACDLWE
HAYYLDHQQDRAQYLDAFWKLINWDFVASRLR
>Mature_191_residues
PIEHLALPYSRAALEPHLSAATVDAHHGVCHRSEVERLNARIEGSEFAELMLEEIIAQAQGTLFQLAAQVWNHNFYWQCL
RPRGGGEPLGRLADSIAASFGDFVHFKQEFNRIAFGTVGSGWVWLVQRPDGRLAVVATPNASTPLTGPDTALLACDLWEH
AYYLDHQQDRAQYLDAFWKLINWDFVASRLR

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=188, Percent_Identity=38.8297872340425, Blast_Score=127, Evalue=7e-30,
Organism=Homo sapiens, GI67782305, Length=188, Percent_Identity=38.8297872340425, Blast_Score=127, Evalue=7e-30,
Organism=Homo sapiens, GI67782309, Length=186, Percent_Identity=32.7956989247312, Blast_Score=94, Evalue=7e-20,
Organism=Escherichia coli, GI1787946, Length=191, Percent_Identity=52.8795811518325, Blast_Score=220, Evalue=5e-59,
Organism=Escherichia coli, GI1790342, Length=199, Percent_Identity=38.1909547738693, Blast_Score=129, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI17506561, Length=188, Percent_Identity=33.5106382978723, Blast_Score=102, Evalue=9e-23,
Organism=Caenorhabditis elegans, GI17569479, Length=186, Percent_Identity=32.7956989247312, Blast_Score=101, Evalue=3e-22,
Organism=Saccharomyces cerevisiae, GI6321796, Length=198, Percent_Identity=34.3434343434343, Blast_Score=103, Evalue=1e-23,
Organism=Drosophila melanogaster, GI17136812, Length=199, Percent_Identity=34.6733668341709, Blast_Score=105, Evalue=2e-23,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21625; Mature: 21493

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIEHLALPYSRAALEPHLSAATVDAHHGVCHRSEVERLNARIEGSEFAELMLEEIIAQA
CCCCHHCCCHHHHHCCCCCCCEEECHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH
QGTLFQLAAQVWNHNFYWQCLRPRGGGEPLGRLADSIAASFGDFVHFKQEFNRIAFGTVG
CCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCC
SGWVWLVQRPDGRLAVVATPNASTPLTGPDTALLACDLWEHAYYLDHQQDRAQYLDAFWK
CCEEEEEECCCCCEEEEECCCCCCCCCCCCHHEEEHHHHHHHHHHCCHHHHHHHHHHHHH
LINWDFVASRLR
HHHHHHHHHHCC
>Mature Secondary Structure 
PIEHLALPYSRAALEPHLSAATVDAHHGVCHRSEVERLNARIEGSEFAELMLEEIIAQA
CCCHHCCCHHHHHCCCCCCCEEECHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH
QGTLFQLAAQVWNHNFYWQCLRPRGGGEPLGRLADSIAASFGDFVHFKQEFNRIAFGTVG
CCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCC
SGWVWLVQRPDGRLAVVATPNASTPLTGPDTALLACDLWEHAYYLDHQQDRAQYLDAFWK
CCEEEEEECCCCCEEEEECCCCCCCCCCCCHHEEEHHHHHHHHHHCCHHHHHHHHHHHHH
LINWDFVASRLR
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]