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The map label for this gene is rbfA [H]

Identifier: 66767930

GI number: 66767930

Start: 1928841

End: 1929239

Strand: Direct

Name: rbfA [H]

Synonym: XC_1606

Alternate gene names: 66767930

Gene position: 1928841-1929239 (Clockwise)

Preceding gene: 66767929

Following gene: 66767931

Centisome position: 37.46

GC content: 66.17

Gene sequence:

>399_bases
ATGACCATGCCAACCAAATCATTCCACCGTACCGACCGCGTTTCGGCGCAGGTACGCCGCGACCTCGGCACCATCGTGCA
CGCCGCGGTGCGCGATCACGGCCTGCCGTCGGTCAGCGTGTCCGATGTCGAAATCAGCCGCGATCTGGCGCACGCCAAGG
TGTTCGTCACCGCGCTGCAGCAGGAGCGTTCCGCCGAGGCGGTGAAGGGGCTCAAGGAAATCGCCGGGCAGTTGCGCACG
CAGCTGGCACGCGCGATGAAGTTGCGCCACGTGCCCGAGTTGCACTTCCACTATGACGATTCGGTGGACCGCGGCGAGCG
CATCGATAACCTGTTGCGCGATCTGGACGATATCGGCCCCGAGGCCGCGCCCGATGCGCAGGATGCCGAGCCGCGCTGA

Upstream 100 bases:

>100_bases
CGGGGCCGCGCGGCCCCGACGCTGCATGACGCGGGCGGCCTGGCCGCCCACGTCTTTTTTTGGCTCCGGTGCCGTTCGGC
CCGATGCATCAACCAGGTCC

Downstream 100 bases:

>100_bases
GCGACGGCAGCACGTGGCCGCCGCTCCGCGCGGCCTTGACCATGCGGGCCGCATCGCGCCCGAGCGAGCGTTGATCCCGT
GAGACCCCGCATCACCTTCC

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 131

Protein sequence:

>132_residues
MTMPTKSFHRTDRVSAQVRRDLGTIVHAAVRDHGLPSVSVSDVEISRDLAHAKVFVTALQQERSAEAVKGLKEIAGQLRT
QLARAMKLRHVPELHFHYDDSVDRGERIDNLLRDLDDIGPEAAPDAQDAEPR

Sequences:

>Translated_132_residues
MTMPTKSFHRTDRVSAQVRRDLGTIVHAAVRDHGLPSVSVSDVEISRDLAHAKVFVTALQQERSAEAVKGLKEIAGQLRT
QLARAMKLRHVPELHFHYDDSVDRGERIDNLLRDLDDIGPEAAPDAQDAEPR
>Mature_131_residues
TMPTKSFHRTDRVSAQVRRDLGTIVHAAVRDHGLPSVSVSDVEISRDLAHAKVFVTALQQERSAEAVKGLKEIAGQLRTQ
LARAMKLRHVPELHFHYDDSVDRGERIDNLLRDLDDIGPEAAPDAQDAEPR

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=111, Percent_Identity=40.5405405405405, Blast_Score=84, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 14739; Mature: 14608

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMPTKSFHRTDRVSAQVRRDLGTIVHAAVRDHGLPSVSVSDVEISRDLAHAKVFVTALQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
QERSAEAVKGLKEIAGQLRTQLARAMKLRHVPELHFHYDDSVDRGERIDNLLRDLDDIGP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHCCC
EAAPDAQDAEPR
CCCCCCCCCCCC
>Mature Secondary Structure 
TMPTKSFHRTDRVSAQVRRDLGTIVHAAVRDHGLPSVSVSDVEISRDLAHAKVFVTALQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
QERSAEAVKGLKEIAGQLRTQLARAMKLRHVPELHFHYDDSVDRGERIDNLLRDLDDIGP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHCCC
EAAPDAQDAEPR
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12024217 [H]