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The map label for this gene is ydhO [H]

Identifier: 66767859

GI number: 66767859

Start: 1843598

End: 1844173

Strand: Reverse

Name: ydhO [H]

Synonym: XC_1535

Alternate gene names: 66767859

Gene position: 1844173-1843598 (Counterclockwise)

Preceding gene: 66767866

Following gene: 66767858

Centisome position: 35.82

GC content: 64.06

Gene sequence:

>576_bases
ATGGCGACCTTCGTAACCGCCCATTATCCCGGCTCGATGCCTATCACGCCAGTTGCTGCCGTTCGTCCCCGCACCGCCGC
GGCCTGCCTGATGCTGGGTCTGTCGCTGCTGGCCGCCTGCTCGCAGGCACCCGTACGCCGCCCGGCGCCAGCACCTGCCA
CCGCACGCGTCTGGCCTCAGGTACCGCCGGCCAACCCCGCTGCCGCCAACAACATCCTCATGCGCGCCCTGGGCCTGGTC
GGCACGCCGTACCGGTATGGCGGCAACACGCCGGAGAGCGGCTTCGACTGCAGCGGGCTTGTCACCTATGTCTACAAAGA
CGTGCTGGCGCTCTCATTGCCCAGGACCTCGCGTGACCTGGCCGCCGTGCAGGGGCCAAAAATTCCAGCGGAAAAATTGT
CAACTGGCGATCTGGTCTTTTTTGGCTCCAGTGGAAGCGTGAGCCACGTCGGCATTTACGTCGGTGAAGGCCGCTTCGTG
CACGCCCCAAGCAGCGGCGGTACCGTCCGCTTGGATTTCCTCGACGGGGCTTACTGGCGTGACCATTATTCAGGTTCAAA
GCGGGTTTTACATTGA

Upstream 100 bases:

>100_bases
ACGACGCTGTCTTTTTCGATCTTCATGCCTGGCTCTGAATGGGGCTGCCCGGTGGCAGACGGTTGAGGACGGCTTGTAGG
CCGTCGAGTGCGCCGCCATC

Downstream 100 bases:

>100_bases
AATGTGACGTGAGTCACAAGTCATAAAACGGAAAGTTAACGTTTTTTGAACGTAACGAACCTTTCACCAAGGCATCATCC
CGCATCGACAGCAGAATTGT

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MATFVTAHYPGSMPITPVAAVRPRTAAACLMLGLSLLAACSQAPVRRPAPAPATARVWPQVPPANPAAANNILMRALGLV
GTPYRYGGNTPESGFDCSGLVTYVYKDVLALSLPRTSRDLAAVQGPKIPAEKLSTGDLVFFGSSGSVSHVGIYVGEGRFV
HAPSSGGTVRLDFLDGAYWRDHYSGSKRVLH

Sequences:

>Translated_191_residues
MATFVTAHYPGSMPITPVAAVRPRTAAACLMLGLSLLAACSQAPVRRPAPAPATARVWPQVPPANPAAANNILMRALGLV
GTPYRYGGNTPESGFDCSGLVTYVYKDVLALSLPRTSRDLAAVQGPKIPAEKLSTGDLVFFGSSGSVSHVGIYVGEGRFV
HAPSSGGTVRLDFLDGAYWRDHYSGSKRVLH
>Mature_190_residues
ATFVTAHYPGSMPITPVAAVRPRTAAACLMLGLSLLAACSQAPVRRPAPAPATARVWPQVPPANPAAANNILMRALGLVG
TPYRYGGNTPESGFDCSGLVTYVYKDVLALSLPRTSRDLAAVQGPKIPAEKLSTGDLVFFGSSGSVSHVGIYVGEGRFVH
APSSGGTVRLDFLDGAYWRDHYSGSKRVLH

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=134, Percent_Identity=39.5522388059701, Blast_Score=122, Evalue=1e-29,
Organism=Escherichia coli, GI1786421, Length=162, Percent_Identity=35.8024691358025, Blast_Score=112, Evalue=1e-26,
Organism=Escherichia coli, GI1788001, Length=111, Percent_Identity=43.2432432432432, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788501, Length=110, Percent_Identity=38.1818181818182, Blast_Score=88, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 20064; Mature: 19933

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATFVTAHYPGSMPITPVAAVRPRTAAACLMLGLSLLAACSQAPVRRPAPAPATARVWPQ
CCEEEEEECCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCC
VPPANPAAANNILMRALGLVGTPYRYGGNTPESGFDCSGLVTYVYKDVLALSLPRTSRDL
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCH
AAVQGPKIPAEKLSTGDLVFFGSSGSVSHVGIYVGEGRFVHAPSSGGTVRLDFLDGAYWR
HHHCCCCCCHHHCCCCCEEEECCCCCEEEEEEEEECCEEEECCCCCCEEEEEECCCCHHH
DHYSGSKRVLH
HCCCCCCCCCC
>Mature Secondary Structure 
ATFVTAHYPGSMPITPVAAVRPRTAAACLMLGLSLLAACSQAPVRRPAPAPATARVWPQ
CEEEEEECCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCC
VPPANPAAANNILMRALGLVGTPYRYGGNTPESGFDCSGLVTYVYKDVLALSLPRTSRDL
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCH
AAVQGPKIPAEKLSTGDLVFFGSSGSVSHVGIYVGEGRFVHAPSSGGTVRLDFLDGAYWR
HHHCCCCCCHHHCCCCCEEEECCCCCEEEEEEEEECCEEEECCCCCCEEEEEECCCCHHH
DHYSGSKRVLH
HCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]