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The map label for this gene is yqhC [H]

Identifier: 66767765

GI number: 66767765

Start: 1737096

End: 1738007

Strand: Reverse

Name: yqhC [H]

Synonym: XC_1439

Alternate gene names: 66767765

Gene position: 1738007-1737096 (Counterclockwise)

Preceding gene: 66767767

Following gene: 66767763

Centisome position: 33.76

GC content: 65.68

Gene sequence:

>912_bases
ATGGCCTCTTCCATCGCCCATCTGATCGACGTGCTGCAACGTCATGCACCGACCGATGGCACCTTCAGCACCGCCGTGCC
CGGGCTGCGGCTGATGCGCTGCTCCGCGCCCACCTACTCCATCCCCACGGTGTACACGCTCACCCTGTGCCTGGTCGCCC
AAGGGCACAAGCAGGCCATGCTCGGCACCACCGCGTATCACTACCATCCGGCGATGTATCTGGTGGCCTCTGTGGACCTG
CCGATCATCGGCTCGGTGATCGAAGCGAGCCCGGCCCAGCCGTATCTGTGTTTTTGCCTGGATCTGGACGTGGCCGTGCT
CAGCGACCTTGCGATCCGTTACCCGGCCCTGGCCGAGCAGGCCGGCGACGCGCCAGCGTCCGGACTGTTGCTCAATCGCA
GCACGCCGGAGTTGCACGACGCCGCCTTGCGGCTGGCGCGCCTGCTCGACCAGCCGCGCGACATCGACGCGCTGGCGCCG
CTGGTACTGCGCGAATTGCTGTACCGGCTGATGGCCGAACCGGGCAATGCCATCGTGCGCCAGATGGCCATTGCCGACAG
CCGCCTCAACCAGATTTCCAGGGCCATTGCCTGGCTGCGTGCGCACTACGCGGAGCGTTTCAGCATCGAGCAGATCGCAG
ATCTGTCGGCAATGAGCCGCTCCACCTTCCACACCCATTTCAAGGCAGTCACCTCGATGACGCCGCTGGAATTTCGCTCG
CACCTACGCGTGCAGGAAGCACGCCGGCTGATGGTGGCCGAGGCACTCAGTGCCGCCGACGCCGGTTTCCGTGTCGGCTA
CGAAAGCGCATCGCAGTTCAGTCGCGACTACGCCCGCATCCTCGGCACGCCGCCCGCACGCGATGCACAACAATTGCGTG
CCAGCCGGCAGGACGCGATCGAAGTGGCGTGA

Upstream 100 bases:

>100_bases
GCAGGGTAGCAATACCCGCCGCTGCTGCGCGCCTAACACCCGCTCTTGTACGATCGCGCCACCGCGGCGCGGCCGCACAC
ACCCCGCACGAGCGTTCCAC

Downstream 100 bases:

>100_bases
CGGCGTGGGCCGCCTCGACAGCGGCCGGTGGGCGTGGTGCACGCGCGCAGTGATCACTCACCAACACGGCGTGACGCAAC
ACTCTGGTGTGTGCGGCTGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MASSIAHLIDVLQRHAPTDGTFSTAVPGLRLMRCSAPTYSIPTVYTLTLCLVAQGHKQAMLGTTAYHYHPAMYLVASVDL
PIIGSVIEASPAQPYLCFCLDLDVAVLSDLAIRYPALAEQAGDAPASGLLLNRSTPELHDAALRLARLLDQPRDIDALAP
LVLRELLYRLMAEPGNAIVRQMAIADSRLNQISRAIAWLRAHYAERFSIEQIADLSAMSRSTFHTHFKAVTSMTPLEFRS
HLRVQEARRLMVAEALSAADAGFRVGYESASQFSRDYARILGTPPARDAQQLRASRQDAIEVA

Sequences:

>Translated_303_residues
MASSIAHLIDVLQRHAPTDGTFSTAVPGLRLMRCSAPTYSIPTVYTLTLCLVAQGHKQAMLGTTAYHYHPAMYLVASVDL
PIIGSVIEASPAQPYLCFCLDLDVAVLSDLAIRYPALAEQAGDAPASGLLLNRSTPELHDAALRLARLLDQPRDIDALAP
LVLRELLYRLMAEPGNAIVRQMAIADSRLNQISRAIAWLRAHYAERFSIEQIADLSAMSRSTFHTHFKAVTSMTPLEFRS
HLRVQEARRLMVAEALSAADAGFRVGYESASQFSRDYARILGTPPARDAQQLRASRQDAIEVA
>Mature_302_residues
ASSIAHLIDVLQRHAPTDGTFSTAVPGLRLMRCSAPTYSIPTVYTLTLCLVAQGHKQAMLGTTAYHYHPAMYLVASVDLP
IIGSVIEASPAQPYLCFCLDLDVAVLSDLAIRYPALAEQAGDAPASGLLLNRSTPELHDAALRLARLLDQPRDIDALAPL
VLRELLYRLMAEPGNAIVRQMAIADSRLNQISRAIAWLRAHYAERFSIEQIADLSAMSRSTFHTHFKAVTSMTPLEFRSH
LRVQEARRLMVAEALSAADAGFRVGYESASQFSRDYARILGTPPARDAQQLRASRQDAIEVA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=287, Percent_Identity=29.616724738676, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1790339, Length=107, Percent_Identity=32.7102803738318, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33208; Mature: 33076

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASSIAHLIDVLQRHAPTDGTFSTAVPGLRLMRCSAPTYSIPTVYTLTLCLVAQGHKQAM
CCCHHHHHHHHHHHCCCCCCCHHHHCCCHHEEEECCCCCCCHHHHHHHHHHHHCCCHHHH
LGTTAYHYHPAMYLVASVDLPIIGSVIEASPAQPYLCFCLDLDVAVLSDLAIRYPALAEQ
HCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
AGDAPASGLLLNRSTPELHDAALRLARLLDQPRDIDALAPLVLRELLYRLMAEPGNAIVR
CCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
QMAIADSRLNQISRAIAWLRAHYAERFSIEQIADLSAMSRSTFHTHFKAVTSMTPLEFRS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
HLRVQEARRLMVAEALSAADAGFRVGYESASQFSRDYARILGTPPARDAQQLRASRQDAI
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
EVA
CCC
>Mature Secondary Structure 
ASSIAHLIDVLQRHAPTDGTFSTAVPGLRLMRCSAPTYSIPTVYTLTLCLVAQGHKQAM
CCHHHHHHHHHHHCCCCCCCHHHHCCCHHEEEECCCCCCCHHHHHHHHHHHHCCCHHHH
LGTTAYHYHPAMYLVASVDLPIIGSVIEASPAQPYLCFCLDLDVAVLSDLAIRYPALAEQ
HCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
AGDAPASGLLLNRSTPELHDAALRLARLLDQPRDIDALAPLVLRELLYRLMAEPGNAIVR
CCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
QMAIADSRLNQISRAIAWLRAHYAERFSIEQIADLSAMSRSTFHTHFKAVTSMTPLEFRS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
HLRVQEARRLMVAEALSAADAGFRVGYESASQFSRDYARILGTPPARDAQQLRASRQDAI
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
EVA
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]