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The map label for this gene is yagT [H]

Identifier: 66767712

GI number: 66767712

Start: 1673488

End: 1674156

Strand: Direct

Name: yagT [H]

Synonym: XC_1385

Alternate gene names: 66767712

Gene position: 1673488-1674156 (Clockwise)

Preceding gene: 66767711

Following gene: 66767713

Centisome position: 32.5

GC content: 64.13

Gene sequence:

>669_bases
TTGTTGGAGATGCCAGCCATGAGAGATATCAAGATGACCCGACGCGAGGTGTTGATCGCTGGCACGGCGTCTGCCGCCAG
CGTCGCTGCCAGTCAGTCCATGGCTGCAGGCGCCGCCAACGCGCTGTCGCAGCGCCAGGCCGCCGAACCCGCCAACGCAT
CCAGCGAGGTGGCCTTTGAAGTCAACGGCAAGCCGGTGACGCTGACGCTGGACAACCGCACCACCTTGCTGGATGCGCTG
CGCGAGCATCTGCATCTGACCGGCACCAAGAAGGGCTGCGACCACGGCCAATGCGGTGCCTGCACCGTCATCGTCGACGG
GCAGCGCATGAATTCCTGCCTGTCGCTGGCGGTGATGCATCAGGGCGCCAAGGTCACCACCATCGAAGGGCTCGGTACGC
CCGACAAGCTGCATCCAATGCAGGCGGCCTTCGTCAAACATGATGGCTACCAGTGCGGCTATTGCACACCGGGGCAGATC
TGCTCGGCGGTGGCGGTGCTGGATGAGGTCAAGCGCGGCATCCCCAGCCATGTCACCGACGATCTCACTGCCAAGACGCG
GCTCACCACGGTGGAGTTGCAGGAGCGCATGAGCGGCAACATCTGCCGCTGCGGTGCGTACTCCAACATCGTCGAGGCGA
TCACCGAAGTTGCCGGAGACCGCGCATGA

Upstream 100 bases:

>100_bases
ATCGGGACAACCTACTGCATTGCCGCCATCGCGCACAGCCGCGCTCACGCGCTTGTGACCGGCAGCGCTGCACATTATTT
AAGAACTGTATAAGCCAGCA

Downstream 100 bases:

>100_bases
AGGCTTTCAGTTACGAGCGCGCCACCTCCCCGGCAGATGCCGCAGCCAAGGCCGCGCGTCAGCCCGGCGCCAAGTTCATC
GCCGGCGGCACCAACCTGCT

Product: putative xanthine dehydrogenase iron-sulfur-binding subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MLEMPAMRDIKMTRREVLIAGTASAASVAASQSMAAGAANALSQRQAAEPANASSEVAFEVNGKPVTLTLDNRTTLLDAL
REHLHLTGTKKGCDHGQCGACTVIVDGQRMNSCLSLAVMHQGAKVTTIEGLGTPDKLHPMQAAFVKHDGYQCGYCTPGQI
CSAVAVLDEVKRGIPSHVTDDLTAKTRLTTVELQERMSGNICRCGAYSNIVEAITEVAGDRA

Sequences:

>Translated_222_residues
MLEMPAMRDIKMTRREVLIAGTASAASVAASQSMAAGAANALSQRQAAEPANASSEVAFEVNGKPVTLTLDNRTTLLDAL
REHLHLTGTKKGCDHGQCGACTVIVDGQRMNSCLSLAVMHQGAKVTTIEGLGTPDKLHPMQAAFVKHDGYQCGYCTPGQI
CSAVAVLDEVKRGIPSHVTDDLTAKTRLTTVELQERMSGNICRCGAYSNIVEAITEVAGDRA
>Mature_222_residues
MLEMPAMRDIKMTRREVLIAGTASAASVAASQSMAAGAANALSQRQAAEPANASSEVAFEVNGKPVTLTLDNRTTLLDAL
REHLHLTGTKKGCDHGQCGACTVIVDGQRMNSCLSLAVMHQGAKVTTIEGLGTPDKLHPMQAAFVKHDGYQCGYCTPGQI
CSAVAVLDEVKRGIPSHVTDDLTAKTRLTTVELQERMSGNICRCGAYSNIVEAITEVAGDRA

Specific function: Iron-sulfur subunit of the xanthine dehydrogenase complex [H]

COG id: COG2080

COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 2Fe-2S ferredoxin-type domain [H]

Homologues:

Organism=Homo sapiens, GI91823271, Length=177, Percent_Identity=36.7231638418079, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI71773480, Length=172, Percent_Identity=39.5348837209302, Blast_Score=75, Evalue=6e-14,
Organism=Escherichia coli, GI1786480, Length=213, Percent_Identity=59.6244131455399, Blast_Score=261, Evalue=3e-71,
Organism=Escherichia coli, GI1789232, Length=165, Percent_Identity=36.969696969697, Blast_Score=102, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17540638, Length=180, Percent_Identity=36.6666666666667, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17539860, Length=169, Percent_Identity=34.3195266272189, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI32566215, Length=169, Percent_Identity=34.9112426035503, Blast_Score=93, Evalue=1e-19,
Organism=Drosophila melanogaster, GI17737937, Length=172, Percent_Identity=40.1162790697674, Blast_Score=105, Evalue=3e-23,
Organism=Drosophila melanogaster, GI24647199, Length=170, Percent_Identity=34.1176470588235, Blast_Score=97, Evalue=7e-21,
Organism=Drosophila melanogaster, GI24647195, Length=178, Percent_Identity=33.1460674157303, Blast_Score=94, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24647197, Length=178, Percent_Identity=33.1460674157303, Blast_Score=94, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24647201, Length=170, Percent_Identity=34.1176470588235, Blast_Score=91, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24647193, Length=152, Percent_Identity=33.5526315789474, Blast_Score=81, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002888
- InterPro:   IPR006058
- InterPro:   IPR012675
- InterPro:   IPR001041
- InterPro:   IPR006311 [H]

Pfam domain/function: PF00111 Fer2; PF01799 Fer2_2 [H]

EC number: NA

Molecular weight: Translated: 23427; Mature: 23427

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: PS00070 ALDEHYDE_DEHYDR_CYS ; PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
8.1 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
8.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEMPAMRDIKMTRREVLIAGTASAASVAASQSMAAGAANALSQRQAAEPANASSEVAFE
CCCCCCCHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
VNGKPVTLTLDNRTTLLDALREHLHLTGTKKGCDHGQCGACTVIVDGQRMNSCLSLAVMH
ECCEEEEEEECCCHHHHHHHHHHHEECCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHH
QGAKVTTIEGLGTPDKLHPMQAAFVKHDGYQCGYCTPGQICSAVAVLDEVKRGIPSHVTD
CCCEEEEEECCCCCCHHCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
DLTAKTRLTTVELQERMSGNICRCGAYSNIVEAITEVAGDRA
CCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLEMPAMRDIKMTRREVLIAGTASAASVAASQSMAAGAANALSQRQAAEPANASSEVAFE
CCCCCCCHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
VNGKPVTLTLDNRTTLLDALREHLHLTGTKKGCDHGQCGACTVIVDGQRMNSCLSLAVMH
ECCEEEEEEECCCHHHHHHHHHHHEECCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHH
QGAKVTTIEGLGTPDKLHPMQAAFVKHDGYQCGYCTPGQICSAVAVLDEVKRGIPSHVTD
CCCEEEEEECCCCCCHHCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
DLTAKTRLTTVELQERMSGNICRCGAYSNIVEAITEVAGDRA
CCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]