| Definition | Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome. |
|---|---|
| Accession | NC_007086 |
| Length | 5,148,708 |
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The map label for this gene is rpoN [H]
Identifier: 66767638
GI number: 66767638
Start: 1600647
End: 1602083
Strand: Reverse
Name: rpoN [H]
Synonym: XC_1311
Alternate gene names: 66767638
Gene position: 1602083-1600647 (Counterclockwise)
Preceding gene: 66767639
Following gene: 66767637
Centisome position: 31.12
GC content: 67.85
Gene sequence:
>1437_bases ATGAAAGCCCGGCTCCAGACATCGTTAGGACAGCAGTTGGTCATGACGCCGCAATTGCGTCAGGCGATCAAACTATTGCA GATGTCCACCACCGAGCTGGAAGTGGAAATCGCCGAAGCGGTGGAGACCAATCCACTGCTGGAGTGGGCCGACGAAGCCG CGCACGCGGCCAGCGAGGCGCCGGTCGAACCGTCGCCCTCCGCCTCCAACGAAGAACGCCAACGCGACGAGCCGGCGCCT GCCGAGCGCGACGACGACTGGTCGCAGGACGAGCTGCAGTGGACCGGCACTGGCAGTGGCGGCAGCTTCGACGATGACGA CAACGGCGACGCCGCCGAACGCGTGGCCGAGTCCGAAACCCTGGCCGACCACCTGTTGTGGCAGTTGCACCTGTCACCGT TGTCGCCAAGGGACCGCCAGATCGGCGCGATCCTGATCGATGCCCTGGACGAAGACGGCTACCTGCGCGAGCCGCTCAGC GCGATTCTGGAGACGCTCAACCTCGGCAACGTGGACGAGGCCGAAGTGCTCACCGTGCTGCACCAGATCCAGCGCTTCGA CCCGGTGGGCATCGGTGCGCGCTCGCTGGGCGAATGCCTCGCGCTGCAGCTGCAGGTGCTCGATGCGGCGACGCCGGCGC GCGAGCTGGCGCTGCAGATCGTGGCCGGGCCGCTGGAACGGCTGCCGCGCAGCGGCATCGCCGGCCTGGCTCACGAACTC AAGCGCTCCGCCGCCGATGTCGAGCAGGCCGTGCAGCTGGTGCGCTCGCTGGACCCGCGCCCGGGCAAGCAGATCAGCGC GCTGTCGCAGGACACCTATGTAGTGCCGGACTGTGTGATCTGGCGCCAGCGTGGCGTCTGGCGCGCCGCCCTGGCTGGCC GCGCGCAACCGAAGGTGACCATCCACCGCGGCTACGAGCAACTGATCCGCAGCTGCGGCGAATCCGACGCCGGCTACCTG CGCGGCCAGCTACAGGAAGCGCGCTGGCTGCTCAAGAGCCTGGAGGCGCGCGGCGAGACCCTGCTGCGGGTGGTGCGCTG CCTGCTGCAGCACCAGGCCGGGTTCCTGGAGTTCGGCGCGCAAGCGCTGCGCCCGCTGACCCTGCGCGAGATCGCCGGTG AGCTGGGCCTGCACGAATCGACGATTTCGCGTGCCATTGCCCGCAAGTACGTGCGCACGCCGCGCGGCACCATCCCGCTG CGCTCGTTCTTTGCCTCCGGCATCGACACCGACAGCGGCGGCGAGGCTTCCAGCACGGCGATCCAGGCGATGATCCGGCG CCTGATCGATGCGGAAAACCCGCGCAAACCCTTGTCGGACGCCAAGTTGGCAGATCTGTTGAAAACTTCCGGCGTACCAG TAGCGCGCCGCACCGTTGCGAAGTATCGTGAGGCCATGAACATTTCCGCCTCCCACGAACGCGTGCGCATCGCCTGA
Upstream 100 bases:
>100_bases CGCTTTGCTCAACAATCCCGACGTGCGGCGCGTCTATCTGGGGGACACCTTCCGCCTTTGAGCGCGTCGCCGCGCCATAG GTCATCCAGCTAGTGTCCGC
Downstream 100 bases:
>100_bases CGTTGCAACCACCGCAACGCCGGCCTATGCCGGGTTCGCCGGACCACCGGAAAGGTTCATTGGCCCACCGACCAATGGAG GTATCCGATGCGTATCGAGA
Product: RNA polymerase factor sigma-54
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 478; Mature: 478
Protein sequence:
>478_residues MKARLQTSLGQQLVMTPQLRQAIKLLQMSTTELEVEIAEAVETNPLLEWADEAAHAASEAPVEPSPSASNEERQRDEPAP AERDDDWSQDELQWTGTGSGGSFDDDDNGDAAERVAESETLADHLLWQLHLSPLSPRDRQIGAILIDALDEDGYLREPLS AILETLNLGNVDEAEVLTVLHQIQRFDPVGIGARSLGECLALQLQVLDAATPARELALQIVAGPLERLPRSGIAGLAHEL KRSAADVEQAVQLVRSLDPRPGKQISALSQDTYVVPDCVIWRQRGVWRAALAGRAQPKVTIHRGYEQLIRSCGESDAGYL RGQLQEARWLLKSLEARGETLLRVVRCLLQHQAGFLEFGAQALRPLTLREIAGELGLHESTISRAIARKYVRTPRGTIPL RSFFASGIDTDSGGEASSTAIQAMIRRLIDAENPRKPLSDAKLADLLKTSGVPVARRTVAKYREAMNISASHERVRIA
Sequences:
>Translated_478_residues MKARLQTSLGQQLVMTPQLRQAIKLLQMSTTELEVEIAEAVETNPLLEWADEAAHAASEAPVEPSPSASNEERQRDEPAP AERDDDWSQDELQWTGTGSGGSFDDDDNGDAAERVAESETLADHLLWQLHLSPLSPRDRQIGAILIDALDEDGYLREPLS AILETLNLGNVDEAEVLTVLHQIQRFDPVGIGARSLGECLALQLQVLDAATPARELALQIVAGPLERLPRSGIAGLAHEL KRSAADVEQAVQLVRSLDPRPGKQISALSQDTYVVPDCVIWRQRGVWRAALAGRAQPKVTIHRGYEQLIRSCGESDAGYL RGQLQEARWLLKSLEARGETLLRVVRCLLQHQAGFLEFGAQALRPLTLREIAGELGLHESTISRAIARKYVRTPRGTIPL RSFFASGIDTDSGGEASSTAIQAMIRRLIDAENPRKPLSDAKLADLLKTSGVPVARRTVAKYREAMNISASHERVRIA >Mature_478_residues MKARLQTSLGQQLVMTPQLRQAIKLLQMSTTELEVEIAEAVETNPLLEWADEAAHAASEAPVEPSPSASNEERQRDEPAP AERDDDWSQDELQWTGTGSGGSFDDDDNGDAAERVAESETLADHLLWQLHLSPLSPRDRQIGAILIDALDEDGYLREPLS AILETLNLGNVDEAEVLTVLHQIQRFDPVGIGARSLGECLALQLQVLDAATPARELALQIVAGPLERLPRSGIAGLAHEL KRSAADVEQAVQLVRSLDPRPGKQISALSQDTYVVPDCVIWRQRGVWRAALAGRAQPKVTIHRGYEQLIRSCGESDAGYL RGQLQEARWLLKSLEARGETLLRVVRCLLQHQAGFLEFGAQALRPLTLREIAGELGLHESTISRAIARKYVRTPRGTIPL RSFFASGIDTDSGGEASSTAIQAMIRRLIDAENPRKPLSDAKLADLLKTSGVPVARRTVAKYREAMNISASHERVRIA
Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is responsible for the expression of the nitrogen utilization genes [H]
COG id: COG1508
COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sigma-54 factor family [H]
Homologues:
Organism=Escherichia coli, GI1789594, Length=480, Percent_Identity=42.0833333333333, Blast_Score=378, Evalue=1e-106,
Paralogues:
None
Copy number: 70 (log & stationary phase) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000394 - InterPro: IPR007046 - InterPro: IPR007634 [H]
Pfam domain/function: PF00309 Sigma54_AID; PF04963 Sigma54_CBD; PF04552 Sigma54_DBD [H]
EC number: NA
Molecular weight: Translated: 52387; Mature: 52387
Theoretical pI: Translated: 5.03; Mature: 5.03
Prosite motif: PS00717 SIGMA54_1 ; PS00718 SIGMA54_2 ; PS50044 SIGMA54_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKARLQTSLGQQLVMTPQLRQAIKLLQMSTTELEVEIAEAVETNPLLEWADEAAHAASEA CCCCHHHHHCHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC PVEPSPSASNEERQRDEPAPAERDDDWSQDELQWTGTGSGGSFDDDDNGDAAERVAESET CCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH LADHLLWQLHLSPLSPRDRQIGAILIDALDEDGYLREPLSAILETLNLGNVDEAEVLTVL HHHHHHHHHHCCCCCCCCHHHHHHEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHH HQIQRFDPVGIGARSLGECLALQLQVLDAATPARELALQIVAGPLERLPRSGIAGLAHEL HHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH KRSAADVEQAVQLVRSLDPRPGKQISALSQDTYVVPDCVIWRQRGVWRAALAGRAQPKVT HHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCEECCHHHHHHHCCHHHHHHCCCCCCCCH IHRGYEQLIRSCGESDAGYLRGQLQEARWLLKSLEARGETLLRVVRCLLQHQAGFLEFGA HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH QALRPLTLREIAGELGLHESTISRAIARKYVRTPRGTIPLRSFFASGIDTDSGGEASSTA HHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHHHH IQAMIRRLIDAENPRKPLSDAKLADLLKTSGVPVARRTVAKYREAMNISASHERVRIA HHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEECC >Mature Secondary Structure MKARLQTSLGQQLVMTPQLRQAIKLLQMSTTELEVEIAEAVETNPLLEWADEAAHAASEA CCCCHHHHHCHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC PVEPSPSASNEERQRDEPAPAERDDDWSQDELQWTGTGSGGSFDDDDNGDAAERVAESET CCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH LADHLLWQLHLSPLSPRDRQIGAILIDALDEDGYLREPLSAILETLNLGNVDEAEVLTVL HHHHHHHHHHCCCCCCCCHHHHHHEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHH HQIQRFDPVGIGARSLGECLALQLQVLDAATPARELALQIVAGPLERLPRSGIAGLAHEL HHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH KRSAADVEQAVQLVRSLDPRPGKQISALSQDTYVVPDCVIWRQRGVWRAALAGRAQPKVT HHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCEECCHHHHHHHCCHHHHHHCCCCCCCCH IHRGYEQLIRSCGESDAGYLRGQLQEARWLLKSLEARGETLLRVVRCLLQHQAGFLEFGA HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH QALRPLTLREIAGELGLHESTISRAIARKYVRTPRGTIPLRSFFASGIDTDSGGEASSTA HHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHHHH IQAMIRRLIDAENPRKPLSDAKLADLLKTSGVPVARRTVAKYREAMNISASHERVRIA HHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8969534 [H]