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The map label for this gene is 66767520

Identifier: 66767520

GI number: 66767520

Start: 1449616

End: 1450188

Strand: Reverse

Name: 66767520

Synonym: XC_1193

Alternate gene names: NA

Gene position: 1450188-1449616 (Counterclockwise)

Preceding gene: 77761138

Following gene: 66767519

Centisome position: 28.17

GC content: 63.0

Gene sequence:

>573_bases
ATGCCATCGACCGATCTTGCGCAACTTCCCGACGAGGAGCTCATGCTCCTCGTCGCCAATGGCTTCATCGAGCAACCGGC
AAGCATGCTGTTCCAGCGCCACAACCGTGCGCTGTTCAATTTCCTGGCCTGGCTCTGCGAGGGCAACCTAAGCGAGGCCG
AAGACCTGGCGCAGAAAACCTGGGTCAAGCTGATGACCCGATGCAGCGACTACCGGCCCGGGCAGGCCGCGTTCACCACA
TTCCTGTTCCAGATCGGCCGCAATGCGTGGATCGACACGCGCCGCAGCGCGCACCACACCACCTCGACTGCGCTGGACGA
GGCGCATCTGCAACTGCCCGACCAGGAGTTGTCGGGCGAGCAGTTGGCGATGCTTGGCCAACAGCAGCACCGCGTGCGCG
CGGCCGTCATGGCATTGCCGGATGCGCAGCGCGAAGTGGTGGTGCTGCGGTTCTTTGCCGAACTTGGTGTTGAAGAAATC
GCCCACGTGGTGGGCGAAGGCTTCGAGACCGTGAAAAGCCGCCTGCGCTATGCATTCGCCAAGCTGCGCGTCAGCCTGGA
TGCGGTGCAATGA

Upstream 100 bases:

>100_bases
CACTAACGACTGATCCCCAGGTCGTTCCCCGGGAGATGGCATGCGCGCTGAGCTGGCAATGAGCCATTGCACCACGCAGC
ACGCGCTCTACACTGCGCGC

Downstream 100 bases:

>100_bases
GCGCACTGTTCGAGCAGTTCCTGGCGGGCGAAGACGGCATCTCGGTGCTGCTGCGCGCACTGCCTGCGTACGCGCCCCCA
GCGGGGATGGATGCGTGGTT

Product: RNA polymerase sigma-70 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor RpoE; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma Factor SigE; RNA Polymerase Sigma-70 Factor; Sigma-70 Family RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF RNA Polymerase Sigma-70 Family; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma-70 Factor Ecf Subfamily; RNA Polymerase Sigma-E Factor; DNA-Directed RNA Polymerase Sigma Subunit; RNA Polymerase Sigma Factor SigW; RNA Polymerase Sigma-H Factor; Fis Family Transcriptional Regulator

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MPSTDLAQLPDEELMLLVANGFIEQPASMLFQRHNRALFNFLAWLCEGNLSEAEDLAQKTWVKLMTRCSDYRPGQAAFTT
FLFQIGRNAWIDTRRSAHHTTSTALDEAHLQLPDQELSGEQLAMLGQQQHRVRAAVMALPDAQREVVVLRFFAELGVEEI
AHVVGEGFETVKSRLRYAFAKLRVSLDAVQ

Sequences:

>Translated_190_residues
MPSTDLAQLPDEELMLLVANGFIEQPASMLFQRHNRALFNFLAWLCEGNLSEAEDLAQKTWVKLMTRCSDYRPGQAAFTT
FLFQIGRNAWIDTRRSAHHTTSTALDEAHLQLPDQELSGEQLAMLGQQQHRVRAAVMALPDAQREVVVLRFFAELGVEEI
AHVVGEGFETVKSRLRYAFAKLRVSLDAVQ
>Mature_189_residues
PSTDLAQLPDEELMLLVANGFIEQPASMLFQRHNRALFNFLAWLCEGNLSEAEDLAQKTWVKLMTRCSDYRPGQAAFTTF
LFQIGRNAWIDTRRSAHHTTSTALDEAHLQLPDQELSGEQLAMLGQQQHRVRAAVMALPDAQREVVVLRFFAELGVEEIA
HVVGEGFETVKSRLRYAFAKLRVSLDAVQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21471; Mature: 21340

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSTDLAQLPDEELMLLVANGFIEQPASMLFQRHNRALFNFLAWLCEGNLSEAEDLAQKT
CCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
WVKLMTRCSDYRPGQAAFTTFLFQIGRNAWIDTRRSAHHTTSTALDEAHLQLPDQELSGE
HHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHCCHH
QLAMLGQQQHRVRAAVMALPDAQREVVVLRFFAELGVEEIAHVVGEGFETVKSRLRYAFA
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHH
KLRVSLDAVQ
HHHHHHHHCC
>Mature Secondary Structure 
PSTDLAQLPDEELMLLVANGFIEQPASMLFQRHNRALFNFLAWLCEGNLSEAEDLAQKT
CCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
WVKLMTRCSDYRPGQAAFTTFLFQIGRNAWIDTRRSAHHTTSTALDEAHLQLPDQELSGE
HHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHCCHH
QLAMLGQQQHRVRAAVMALPDAQREVVVLRFFAELGVEEIAHVVGEGFETVKSRLRYAFA
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHH
KLRVSLDAVQ
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA