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The map label for this gene is ycaD [C]

Identifier: 66767452

GI number: 66767452

Start: 1365961

End: 1367202

Strand: Reverse

Name: ycaD [C]

Synonym: XC_1124

Alternate gene names: 66767452

Gene position: 1367202-1365961 (Counterclockwise)

Preceding gene: 66767455

Following gene: 77761135

Centisome position: 26.55

GC content: 67.55

Gene sequence:

>1242_bases
GTGTTGCGGCTGACTGCGCTGTTGCTTGGCGTGGCCTTGTTGCTGACCGGCAGCGGGCTGCTGGGCACCTTGCTTGCCGT
ACGCGGTGGCCAAGCCGGCTTCGATGCGCGTGCATTGGGGTTGATCATGTCCGGCTACTTTGCCGGGTTCTTTCTGGGCA
CCTTCTTCGCACCGCCGCTGATCCGCCGGATCGGGCATATCCGCGCGTTTGCGTTTTATGCCGCGCTGGCCGCAATCGCG
GTGCTGTTGCATCCGATCTGGCTCGATCCGTGGGGCTGGGGCCTGTTGCGCCTGGTCACCGGCGCCGCGCTGGTGGGCCT
GTACACGGTGATCGAAAGTTGGCTCAACGCCGAGCCGGACGCGCGCCGCCGCAGCCGGGTGTTTTCGGTCTATATGGCGA
TCAACCTGTCGGCACTGGCGCTCGGCCAGGTATTGCTCAGTGCGGGCGATGCCACGGCGCCGGCGATGTTTACGCTCACT
GCCATCCTGATCTGCGCGGCGGTGATGCCGGTGGTGACCACGCGGCTGATTCCGCCCGAGGTGCCGCACGTGTCGCGGCT
GCGGCTGGTCACGCTGTATGCGCTGGCGCCGGTGGCGACCATCGGCGCCGGCCTGTCCGGGTTGGCGATGGGGGCGTTCT
GGGGGCTGCTGCCGGTGTATGCCGACCGCATCGGGCTGGATGCCGACGGCGTGGCGATGTTCATGCTCACCGCCATCGTG
GGTGGCGCGGTGTTGCAGTGGCCGATCGGGCGCATCAGCGATGGCCACGACCGCCGCATTGGCCTGGTCACGGTGAGCGT
GCTGGCCGCCGGCATCGCCATCGCCGCTGCGCTGCCGATGGTGCAGGCGCAGACGCAGGTGCTGTTCCTGCTGTTCTTCG
TGTATGGCGGGCTGGCGTTCTCGCTGTATCCGTTCGCGGTGGCGCACATGCTCGATTACCTGCCGCGCGAGGATTTGTTG
TCCGGCTGCAGCAGCCTGCTGCTGGTGCATGGCGTGGGCGCGGCGATTGGCCCGGCGCTGGCCGGCGGGGCCATGCAGAA
ATTCGGCCCGGCGGCGTTGCCTGCGTATTTCGCGCTGATGCTGCTGGCCCTGGCCGGCTTCACGCTGGCGCGCCTGTTGC
GCTTCCAGCGCCTGCGCACCCATCCCATTGCGTTCCGCCCGATGTTGCGGACCACGCCATCGGCGCTGGAGCTGATGCCG
GAAACCGATTCACCCTCCCCTCCTCACAAGGAAACACATTGA

Upstream 100 bases:

>100_bases
ACAGCCATCACACAGTCCCAGGTGAAACAGGCCACTGCCATCGAGCTGGTACACTTGGGCACGTGACCGACGCGCCTTTT
CCCCCACGAGGGCCGCATTC

Downstream 100 bases:

>100_bases
CTGATCAAACCAGACTCCCGAACACCTCATCCCTGACCCACCCCCGCCCGGATCCTGCCGTGATCCTGGCCACCGACCTG
GATGGCACCTTCCTGGCCGG

Product: transmembrane transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MLRLTALLLGVALLLTGSGLLGTLLAVRGGQAGFDARALGLIMSGYFAGFFLGTFFAPPLIRRIGHIRAFAFYAALAAIA
VLLHPIWLDPWGWGLLRLVTGAALVGLYTVIESWLNAEPDARRRSRVFSVYMAINLSALALGQVLLSAGDATAPAMFTLT
AILICAAVMPVVTTRLIPPEVPHVSRLRLVTLYALAPVATIGAGLSGLAMGAFWGLLPVYADRIGLDADGVAMFMLTAIV
GGAVLQWPIGRISDGHDRRIGLVTVSVLAAGIAIAAALPMVQAQTQVLFLLFFVYGGLAFSLYPFAVAHMLDYLPREDLL
SGCSSLLLVHGVGAAIGPALAGGAMQKFGPAALPAYFALMLLALAGFTLARLLRFQRLRTHPIAFRPMLRTTPSALELMP
ETDSPSPPHKETH

Sequences:

>Translated_413_residues
MLRLTALLLGVALLLTGSGLLGTLLAVRGGQAGFDARALGLIMSGYFAGFFLGTFFAPPLIRRIGHIRAFAFYAALAAIA
VLLHPIWLDPWGWGLLRLVTGAALVGLYTVIESWLNAEPDARRRSRVFSVYMAINLSALALGQVLLSAGDATAPAMFTLT
AILICAAVMPVVTTRLIPPEVPHVSRLRLVTLYALAPVATIGAGLSGLAMGAFWGLLPVYADRIGLDADGVAMFMLTAIV
GGAVLQWPIGRISDGHDRRIGLVTVSVLAAGIAIAAALPMVQAQTQVLFLLFFVYGGLAFSLYPFAVAHMLDYLPREDLL
SGCSSLLLVHGVGAAIGPALAGGAMQKFGPAALPAYFALMLLALAGFTLARLLRFQRLRTHPIAFRPMLRTTPSALELMP
ETDSPSPPHKETH
>Mature_413_residues
MLRLTALLLGVALLLTGSGLLGTLLAVRGGQAGFDARALGLIMSGYFAGFFLGTFFAPPLIRRIGHIRAFAFYAALAAIA
VLLHPIWLDPWGWGLLRLVTGAALVGLYTVIESWLNAEPDARRRSRVFSVYMAINLSALALGQVLLSAGDATAPAMFTLT
AILICAAVMPVVTTRLIPPEVPHVSRLRLVTLYALAPVATIGAGLSGLAMGAFWGLLPVYADRIGLDADGVAMFMLTAIV
GGAVLQWPIGRISDGHDRRIGLVTVSVLAAGIAIAAALPMVQAQTQVLFLLFFVYGGLAFSLYPFAVAHMLDYLPREDLL
SGCSSLLLVHGVGAAIGPALAGGAMQKFGPAALPAYFALMLLALAGFTLARLLRFQRLRTHPIAFRPMLRTTPSALELMP
ETDSPSPPHKETH

Specific function: Unknown

COG id: COG0477

COG function: function code GEPR; Permeases of the major facilitator superfamily

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=365, Percent_Identity=27.6712328767123, Blast_Score=126, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 43699; Mature: 43699

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRLTALLLGVALLLTGSGLLGTLLAVRGGQAGFDARALGLIMSGYFAGFFLGTFFAPPL
CHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHH
IRRIGHIRAFAFYAALAAIAVLLHPIWLDPWGWGLLRLVTGAALVGLYTVIESWLNAEPD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ARRRSRVFSVYMAINLSALALGQVLLSAGDATAPAMFTLTAILICAAVMPVVTTRLIPPE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
VPHVSRLRLVTLYALAPVATIGAGLSGLAMGAFWGLLPVYADRIGLDADGVAMFMLTAIV
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
GGAVLQWPIGRISDGHDRRIGLVTVSVLAAGIAIAAALPMVQAQTQVLFLLFFVYGGLAF
CCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLYPFAVAHMLDYLPREDLLSGCSSLLLVHGVGAAIGPALAGGAMQKFGPAALPAYFALM
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHH
LLALAGFTLARLLRFQRLRTHPIAFRPMLRTTPSALELMPETDSPSPPHKETH
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLRLTALLLGVALLLTGSGLLGTLLAVRGGQAGFDARALGLIMSGYFAGFFLGTFFAPPL
CHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHH
IRRIGHIRAFAFYAALAAIAVLLHPIWLDPWGWGLLRLVTGAALVGLYTVIESWLNAEPD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ARRRSRVFSVYMAINLSALALGQVLLSAGDATAPAMFTLTAILICAAVMPVVTTRLIPPE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
VPHVSRLRLVTLYALAPVATIGAGLSGLAMGAFWGLLPVYADRIGLDADGVAMFMLTAIV
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
GGAVLQWPIGRISDGHDRRIGLVTVSVLAAGIAIAAALPMVQAQTQVLFLLFFVYGGLAF
CCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLYPFAVAHMLDYLPREDLLSGCSSLLLVHGVGAAIGPALAGGAMQKFGPAALPAYFALM
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHH
LLALAGFTLARLLRFQRLRTHPIAFRPMLRTTPSALELMPETDSPSPPHKETH
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA